Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ REL606 2999597 3048488 48892 177 [1] [0] 115 [flu]–yghK [flu],yeeR,ECB_02802,yafZ,ECB_02804,yeeS,yeeT,yeeU,yeeV,yeeW,ECB_02810,ECB_02811,ECB_02812,ECB_02813,ECB_02814,ECB_02815,ECB_02816,ECB_02817,ECB_02818,ECB_02819,ECB_02820,ECB_02821,ECB_02822,insB‑22,insA‑22,ECB_02825,ECB_02826,ECB_02827,ECB_02828,yghD,yghE,ECB_02831,ECB_02832,ECB_02833,ECB_02834,ECB_02835,ECB_02836,ECB_02837,ECB_02838,yghF,yghG,pppA,yghJ,yghK

Only 100 of 115 total aligned reads displayed.

CTCCGGTTATTTCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGACTTTCTT  >  REL606/3048441‑3048539
                                                |                                                  
tattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaccc                                                  >  1:842703‑M2/49‑51 (MQ=255)
tattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaccc                                                  >  1:4701703‑M2/49‑51 (MQ=255)
tattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaccc                                                  >  1:2768886‑M2/49‑51 (MQ=255)
tattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaccc                                                  >  1:8101632‑M2/49‑51 (MQ=255)
tattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaccc                                                  >  1:3251594‑M2/49‑51 (MQ=255)
tattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaccc                                                  <  1:7544307‑M2/3‑1 (MQ=255)
   taggggctattccatttcatcgtccaacaaaatgggtgcagtacaCCCGAc                                               >  1:3932758‑M2/46‑51 (MQ=255)
   taggggctattccatttcatcgtccaacaaaatgggtgcagtacaCCCGAc                                               >  1:8700622‑M2/46‑51 (MQ=255)
    aggggctattccatttcatcgtccaacaaaatgggtgcagtacaCCCGACa                                              >  1:9606499‑M2/45‑51 (MQ=255)
    aggggctattccatttcatcgtccaacaaaatgggagcagtacaCCCGACa                                              >  1:3929755‑M2/45‑51 (MQ=255)
      gggctattccatttcatcgtccaacaaaatgggtgcagtacaCCCGACAAt                                            <  1:8400901‑M2/9‑1 (MQ=255)
      gggctattccatttcatcgtccaacaaaatgggtgcagtacaCCCGACAAt                                            >  1:6280303‑M2/43‑51 (MQ=255)
       ggctattccatttcatcgtccaacaaaatgggtgcagtacaCCCGACAATa                                           >  1:6956301‑M2/42‑51 (MQ=255)
       ggctattccatttcatcgtccaacaaaatgggtgcagtacaCCCGACAATa                                           >  1:4903894‑M2/42‑51 (MQ=255)
        gctattccatttcatcgtccaacaaaatgggtgcagtacaCCCGACAATaa                                          >  1:1161465‑M2/41‑51 (MQ=255)
         ctattccatttcatcgtccaacaaaatgggtgcagtacaCCCGACAATaaa                                         <  1:5837434‑M2/12‑1 (MQ=255)
         ctattccatttcatcgtccaacaaaatgggtgcagtacaCCCGACAATaaa                                         <  1:6104952‑M2/12‑1 (MQ=255)
          tattccatttcatcgtccaacaaaatgggtgcagtacaCCCGACAATaaaa                                        >  1:6001012‑M2/39‑51 (MQ=255)
          tattccatttcatcgtccaacaaaatgggtgcagtacaCCCGACAATaaaa                                        >  1:5063446‑M2/39‑51 (MQ=255)
          tattccatttcatcgtccaacaaaatgggtgcagtacaCCCGACAATaaaa                                        <  1:9466813‑M2/13‑1 (MQ=255)
           attccatttcatcgtccaacaaaatgggtgcagtacaCCCGAc                                               <  1:2395206‑M2/6‑1 (MQ=255)
           attccatttcatcgtccaacaaaatgggtgcagtacaCCCGACAATAAAAc                                       >  1:2909754‑M2/38‑51 (MQ=255)
            ttccatttcatcgtccaacaaaatgggtgcagtacaCCCGACAATAAAACt                                      >  1:8507847‑M2/37‑51 (MQ=255)
             tccatttcatcgtccaacaaaatgggtgcagtacaCCCGACAATAAAACtt                                     >  1:2062578‑M2/36‑51 (MQ=255)
             tccatttcatcgtccaacaaaatgggtgcagtacaCCCGACAATAAAACtt                                     <  1:6083710‑M2/16‑1 (MQ=255)
             tccatttcatcgtccaacaaaatgggtgcagtacaCCCGACAATAAAACtt                                     >  1:4317614‑M2/36‑51 (MQ=255)
             tccatttcatcgtccaacaaaatgggtgcagtacaCCCGACAATAAAACtt                                     <  1:9554621‑M2/16‑1 (MQ=255)
              ccatttcatcgtccaacaaaatgggtgcagtacaCCCGACAATAAAACTTg                                    >  1:8022679‑M2/35‑51 (MQ=255)
              ccatttcatcgtccaacaaaatgggtgcagtacaCCCGACAATAAAACTTg                                    >  1:7693670‑M2/35‑51 (MQ=255)
              ccatttcatcgtccaacaaaatgggtgcagtacaCCCGACAATAAAACTTg                                    <  1:10511328‑M2/17‑1 (MQ=255)
               catttcatcgtccaacaaaatgggtgcagtacaCCCGACAATAAAACTTGc                                   <  1:3532889‑M2/18‑1 (MQ=255)
               catttcatcgtccaacaaaatgggtgcagtacaCCCGACAATAAAACTTGc                                   >  1:8283421‑M2/34‑51 (MQ=255)
                atttcatcgtccaacaaaatgggtgcagtacaCCCGACAATAAAACTTGcc                                  >  1:4541369‑M2/33‑51 (MQ=255)
                 tttcatcgtccaacaaaatgggtgcagtacaCCCGACAATAAAACTTGCCg                                 >  1:2298240‑M2/32‑51 (MQ=255)
                 tttcatcgtccaacaaaatgggtgcagtacaCCCGACAATAAAACTTGCCg                                 >  1:8066889‑M2/32‑51 (MQ=255)
                 tttcatcgtccaacaaaatgggtgcagtacaCCCGACAATAAAACTTGCCg                                 <  1:5832546‑M2/20‑1 (MQ=255)
                 tttcatcgtccaacaaaatgggtgcagtacaCCCGACAATAAAACTTGCCg                                 >  1:5199827‑M2/32‑51 (MQ=255)
                 tttcatcgtccaacaaaatgggcgcagtacaCCCGACAATAAAACTTGCCg                                 >  1:5669652‑M2/32‑51 (MQ=255)
                 tttcatcatccaacaaaatgggtgcagtacaCCCGACAATAAAACTTGCCg                                 <  1:9170720‑M2/20‑1 (MQ=255)
                  ttcatcgtccaacaaaatgggtgcagtacaCCCGACAATAAAACTTGCCgg                                <  1:10136125‑M2/21‑1 (MQ=255)
                  ttcatcgtccaacaaaatgggtgcagtacaCCCGACAATAAAACTTGCCgg                                >  1:2429026‑M2/31‑51 (MQ=255)
                  ttcatcgtccaacaaaatgggtgcagtacaCCCGACAATAAAACTTGCCgg                                >  1:10480865‑M2/31‑51 (MQ=255)
                   tcatcgtccaacaaaatgggtgcagtacaCCCGACAATAAAACTTGCCggg                               <  1:5160819‑M2/22‑1 (MQ=255)
                     atcgtccaacaaaatgggtgcagtacaCCCGACAATAAAACTTGCCGGGGc                             >  1:7880051‑M2/28‑51 (MQ=255)
                     atcgtccaacaaaatgggtgcagtacaCCCGACAATAAAACTTGCCGGGGc                             >  1:276954‑M2/28‑51 (MQ=255)
                     atcgtccaacaaaatgggtgcagtacaCCCGACAATAAAACTTGCCGGGGc                             >  1:6350574‑M2/28‑51 (MQ=255)
                      tcgtccaacaaaatgggtgcagtacaCCCGACAATAAAACTTGCCGGGGCt                            >  1:8509425‑M2/27‑51 (MQ=255)
                      tcgtccaacaaaatgggtgcagtacaCCCGACAATAAAACTTGCCGGGGCt                            >  1:1382411‑M2/27‑51 (MQ=255)
                       cgtccaacaaaatgggtgcagtccaCCCGACAATAAAACTTGCCGGGGCtt                           <  1:10131650‑M2/26‑1 (MQ=255)
                       cgtccaacaaaatgggtgcagtaccCCCGACAATAAAACTTGCCGGGGCtt                           <  1:10437272‑M2/26‑1 (MQ=255)
                       cgtccaacaaaatgggtgcagtaccCCCGACAATAAAACTTGCCGGGGCtt                           <  1:3678147‑M2/26‑1 (MQ=255)
                       cgtccaacaaaatgggtgcagtaccCCCGACAATAAAACTTGCCGGGGCtt                           <  1:5429444‑M2/26‑1 (MQ=255)
                       cgtccaacaaaatgggtgcagtacaCCCGACAATAAAACTTGCCGGGGCtt                           >  1:7142849‑M2/26‑51 (MQ=255)
                       cgtccaacaaaatgggtgcagtacaCCCGACAATAAAACTTGCCGGGGCtt                           <  1:10930468‑M2/26‑1 (MQ=255)
                        gtccaacaaaatgggtgcagtaccCCCGACAATAAAACTTGCCGGGGCttt                          <  1:2307379‑M2/27‑1 (MQ=255)
                          ccaacaaaatgggtgcagtaccCCCGACAATAAAACTTGCCGGGGCttttt                        <  1:4777443‑M2/29‑1 (MQ=255)
                          ccaacaaaatgggtgcagtacaCCCGACAATAAAACTTGCCGGGGCttttt                        <  1:5735777‑M2/29‑1 (MQ=255)
                          ccaacaaaatgggtgcagtacaCCCGACAATAAAACTTGCCGGGGCttttt                        >  1:4371418‑M2/23‑51 (MQ=255)
                           caacaaaatgggtgcagtacaCCCGACAATAAAACTTGCCGGGGCtttttt                       >  1:2267690‑M2/22‑51 (MQ=255)
                            aacaaaatgggtgcagtaccCCCGACAATAAAACTTGCCGGGGCtttttt                       <  1:2746079‑M2/30‑1 (MQ=255)
                            aacaaaatgggtgcagtaccCCCGACAATAAAACTTGCCGGGGCtttt                         <  1:1727449‑M2/28‑1 (MQ=255)
                            aacaaaatgggtgcagtacaCCCGACAATAAAACTTGCCGGGGCTTTTTTg                      >  1:3511907‑M2/21‑51 (MQ=255)
                              caaaatgggtgcagtaccCCCGACAATAAAACTTGCCGGGGCTTTTTTGAc                    <  1:3330591‑M2/33‑1 (MQ=255)
                              caaaatgggtgcagtaccCCCGACAATAAAACTTGCCGGGGCTTTTTTGAc                    <  1:10608608‑M2/33‑1 (MQ=255)
                              caaaatgggtgcagtacaCCCGACAATAAAACTTGCCGGGGCTTTTTTGAc                    >  1:10850940‑M2/19‑51 (MQ=255)
                               aaaatgggtgcagtcccCCCGACAATAAAACTTGCCGGGGCTTTTTTGACg                   <  1:2287748‑M2/34‑1 (MQ=255)
                               aaaatgggtgcagtaccCCCGACAATAAAACTTGCCGGGGCTTTTTTGACg                   <  1:5626630‑M2/34‑1 (MQ=255)
                               aaaatgggtgcagtacaCCCGACAATAAAACTTGCCGGGGCTTTTTTGACg                   >  1:7274781‑M2/18‑51 (MQ=255)
                               aaaatgggtgcagtacaCCCGACAATAAAACTTGCCGGGGCTTTTTTGACg                   <  1:5661440‑M2/34‑1 (MQ=255)
                               aaaatgggtgcagtacaCCCGACAATAAAACTTGCCGGGGCTTTTTTGACg                   <  1:10341498‑M2/34‑1 (MQ=255)
                                 aatgggtgcagtaccCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCt                 <  1:2430649‑M2/36‑1 (MQ=255)
                                  atgggtgcagtacaCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTa                <  1:7965617‑M2/37‑1 (MQ=255)
                                  atgggtgcagtacaCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTa                >  1:1548756‑M2/15‑51 (MQ=255)
                                   tgggtgcagtacaCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTAt               <  1:4433391‑M2/38‑1 (MQ=255)
                                    gggtgcagtacaCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTAtt              <  1:5800658‑M2/39‑1 (MQ=255)
                                     ggtgcagtacaCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTa             <  1:10945978‑M2/40‑1 (MQ=255)
                                     ggtgcagtacaCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTa             <  1:8449603‑M2/40‑1 (MQ=255)
                                      gtgcagtaccCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTaa            <  1:1315958‑M2/41‑1 (MQ=255)
                                      gtgcagtacaCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTaa            >  1:6956794‑M2/11‑51 (MQ=255)
                                      gtgcagtacaCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTaa            <  1:8478664‑M2/41‑1 (MQ=255)
                                       tgcagtacaCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAAt           <  1:7336539‑M2/42‑1 (MQ=255)
                                        gcagtacaCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTa             <  1:3537074‑M2/40‑1 (MQ=255)
                                         cagtacaCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGa         >  1:3848410‑M2/8‑51 (MQ=255)
                                         cagtacaCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGa         <  1:820641‑M2/44‑1 (MQ=255)
                                          agtacaCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGAc        >  1:4031875‑M2/7‑51 (MQ=255)
                                            tacaCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGACtt      >  1:2733626‑M2/5‑51 (MQ=255)
                                            tacaCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGACtt      >  1:3667487‑M2/5‑51 (MQ=255)
                                             acaCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGACttt     <  1:5463643‑M2/48‑1 (MQ=255)
                                             acaCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGACttt     <  1:4094056‑M2/48‑1 (MQ=255)
                                              caCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTAtt              >  1:5125880‑M2/3‑41 (MQ=255)
                                              caCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGACTTTc    <  1:10394040‑M2/49‑1 (MQ=255)
                                               aCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGACTTTCt   >  1:93190‑M2/2‑51 (MQ=255)
                                                cccGACAATAAAACTTGCCGGGGCTTTTTTGAc                    <  1:1135122/33‑1 (MQ=255)
                                                cccGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTa             <  1:5228618/40‑1 (MQ=255)
                                                cccGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGa         <  1:1039091/44‑1 (MQ=255)
                                                cccGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGActttctt  <  1:5398193/51‑1 (MQ=255)
                                                cccGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGActttctt  <  1:4487904/51‑1 (MQ=255)
                                                cccGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGActttctt  <  1:8462341/51‑1 (MQ=255)
                                                cccGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGActt      <  1:2069321/47‑1 (MQ=255)
                                                cccGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGAct       <  1:7205164/46‑1 (MQ=255)
                                                |                                                  
CTCCGGTTATTTCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGACTTTCTT  >  REL606/3048441‑3048539

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: