| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| MC | REL606 | 1,609,175 | Δ7,554 bp | 100% | between IS3 | ybcW–[ECB_01526] | ybcW, gnsB, ynfN, ECB_01516, cspI, ydfP, ydfQ, ydfR, essQ, ECB_01522, ECB_01523, insE‑4, insF‑4, [ECB_01526] |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 1607943–1609176 | 1616699–1615469 | 6294–8757 | 53 [48] | [52] 60 | insE‑3–insF‑4 | insE‑3,insF‑3,ybcW,gnsB,ynfN,ECB_01516,cspI,ydfP,ydfQ,ydfR,essQ,ECB_01522,ECB_01523,insE‑4,insF‑4 |
TGCGGCGTGGCGGTTATCTGAAAATTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTC > REL606/1607892‑1607964 | tGCGGCGTGGCGGTTATCTGAAAATTGATCTTACCCAGCAATAGTGGacac < 1:10353555/51‑1 (MQ=255)tGCGGCGTGGCGGTTATCTGAAAATTGATCTTACCCAGCAATAGTGGacac < 1:9894358/51‑1 (MQ=255)tGCGGCGTGGCGGTTATCTGAAAATTGATCTTACCCAGCAATAGTGGacac > 1:8097402/1‑51 (MQ=255)tGCGGCGTGGCGGTTATCTGAAAATTGATCTTACCCAGCAATAGTGGacac < 1:788925/51‑1 (MQ=255)tGCGGCGTGGCGGTTATCTGAAAATTGATCTTACCCAGCAATAGTGGacac < 1:1897346/51‑1 (MQ=255) gcggcgTGGCGGTTATCTGAAAATTGATCTTACCCAGCAATAGTGGACAcg < 1:6395787/51‑1 (MQ=255) cggcgTGGCGGTTATCTGAAAATTGATCTTACCCAGCAATAGTGGACAcgc < 1:1665470/51‑1 (MQ=255) cggcgTGGCGGTTATCTGAAAATTGATCTTACCCAGCAATAGTGGACAcgc < 1:2567509/51‑1 (MQ=255) ggcgTGGCGGTTATCTGAAAATTGATCTTACCCAGCAATAGTGGACAcgcg < 1:6351972/51‑1 (MQ=255) ggcgTGGCGGTTATCTGAAAATTGATCTTACCCAGCAATAGTGGACAcgcg > 1:6298067/1‑51 (MQ=255) gcgTGGCGGTTATCTGAAAATTGATCTTACCCAGCAATAGTGGACACGCgg < 1:6710553/51‑1 (MQ=255) gTGGCGGTTATCTGAAAATTGATCTTACCCAGCAATAGTGGACACGCGGCt > 1:4729443/1‑51 (MQ=255) gTGGCGGTTATCTGAAAATTGATCTTACCCAGCAATAGTGGACACGCGGCt > 1:6518838/1‑51 (MQ=255) gTGGCGGTTATCTGAAAATTGATCTTACCCAGCAATAGTGGACACGCGGCt > 1:3571287/1‑51 (MQ=255) gTGGCGGTTATCTGAAAATTGATCTTACCCAGCAATAGTGGACACGCGGCt > 1:3433018/1‑51 (MQ=255) gTGGCGGTTATCTGAAAATTGATCTTACCCAGCAATAGTGGACACGCGGCt < 1:10751914/51‑1 (MQ=255) gTGGCGGTTATCTGAAAATTGATCTTACCCAGCAATAGTGGACACGCGGCt < 1:1921301/51‑1 (MQ=255) tGGCGGTTATCTGAAAATTGATCTTACCCAGCAATAGTGGACACGCGGCTa > 1:10561689/1‑51 (MQ=255) tGGCGGTTATCTGAAAATTGATCTTACCCAGCAATAGTGGACACGCGGCTa < 1:10943350/51‑1 (MQ=255) ggCGGTTATCTGAAAATTGATCTTACCCAGCAATAGTGGACACGCGGCTaa < 1:4610407/51‑1 (MQ=255) gCGGTTATCTGAAAATTGATCTTACCCAGCAATAGTGGACACGCGGCTAAg > 1:9018241/1‑51 (MQ=255) gCGGTTATCTGAAAATTGATCTTACCCAGCAATAGTGGACACGCGGCTAAg > 1:825524/1‑51 (MQ=255) ggTTATCTGAAAATTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTg < 1:5397337/51‑1 (MQ=255) ggTTATCTGAAAATTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTg > 1:4317886/1‑51 (MQ=255) ggTTATCTGAAAATTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTg > 1:8890479/1‑51 (MQ=255) ggTTATCTGAAAATTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTg < 1:5500780/51‑1 (MQ=255) gTTATCTGAAAATTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGa < 1:149645/51‑1 (MQ=255) gTTATCTGAAAATTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGa < 1:4113134/51‑1 (MQ=255) gTTATCTGAAAATTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGa > 1:6561361/1‑51 (MQ=255) ttATCTGAAAATTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAg > 1:8853619/1‑51 (MQ=255) ttATCTGAAAATTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAg > 1:10846060/1‑51 (MQ=255) ttATCTGAAAATTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAg < 1:5711307/51‑1 (MQ=255) ttATCTGAAAATTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAg > 1:4999067/1‑51 (MQ=255) ttATCTGAAAATTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAg > 1:924317/1‑51 (MQ=255) ttATCTGAAAATTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAg > 1:3695084/1‑51 (MQ=255) aTCTGAAAATTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAg > 1:7136630/1‑49 (MQ=255) aTCTGAAAATTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa < 1:3828978/51‑1 (MQ=255) aTCTGAAAATTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa < 1:5186360/51‑1 (MQ=255) aTCTGAAAATTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa < 1:6331729/51‑1 (MQ=255) tCTGAAAATTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaa > 1:3373158/1‑51 (MQ=255) tCTGAAAATTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaa > 1:220701/1‑51 (MQ=255) cTGAAAATTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaaa < 1:5739874/51‑1 (MQ=255) cTGAAAATTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaaa < 1:7567637/51‑1 (MQ=40) tGAAAATTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAAc > 1:4283595/1‑51 (MQ=38) tGAAAATTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAAc < 1:881922/51‑1 (MQ=40) tGAAAATTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAAc > 1:2951008/1‑51 (MQ=38) gAAAATTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAAct < 1:3266065/51‑1 (MQ=38) aaaaTTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActc > 1:2283640/1‑51 (MQ=35) aaaaTTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActc > 1:3613904/1‑51 (MQ=35) aaaaTTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActc < 1:9933953/51‑1 (MQ=35) aaaTTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct > 1:10662066/1‑51 (MQ=33) aaaTTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct > 1:9782138/1‑51 (MQ=33) aaTTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACtctc < 1:2261999/51‑1 (MQ=31) | TGCGGCGTGGCGGTTATCTGAAAATTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTC > REL606/1607892‑1607964 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |