| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2093027 = | 0 (0.000) | 95 (1.000) | 55/80 | NT | 100% | coding (1534/3078 nt) | yegO | multidrug efflux system, subunit C |
| ? | REL606 | 2774435 = | NA (NA) | noncoding (1443/1443 nt) | IS150 | repeat region | |||||
Only 100 of 121 total aligned reads displayed.
CGCGAGCAAAAGCGACTGCGTGGTTTTGGTCGCATGTTGGTAGCCCTGCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATACCCGTCTG > REL606/2092979‑2093077 | gacctatatgcctcgtgtttaactgtccaactttttggggtcagtacacaa < 1:7227‑M1/3‑1 (MQ=255)gacctatatgcctcgtgtttaactgtccaactttttggggtcagtacacaa > 1:3637668‑M1/49‑51 (MQ=255)gacctatatgcctcgtgtttaactgtccaactttttggggtcagtacacaa < 1:2948874‑M1/3‑1 (MQ=255)gacctatatgcctcgtgtttaactgtccaactttttggggtcagtacacaa > 1:1807288‑M1/49‑51 (MQ=255)gacctatatgcctcgtgtttaactgtccaactttttggggtcagtacacaa > 1:10435713‑M1/49‑51 (MQ=255) acctatatgcctcgtgtttaactgtccaactttttggggtcagtacacaac < 1:9671247‑M1/4‑1 (MQ=255) acctatatgcctcgtgtttaactgtccaactttttggggtcagtacacaac > 1:2411840‑M1/48‑51 (MQ=255) acctatatgcctcgtgtttaactgtccaactttttggggtcagtacacaac < 1:8961178‑M1/4‑1 (MQ=255) acctatatgcctcgtgtttaactgtccaactttttggggtcagtacacaac > 1:4140035‑M1/48‑51 (MQ=255) acctatatgcctcgtgtttaactgtccaactttttggggtcagtacacaac < 1:10453149‑M1/4‑1 (MQ=255) acctatatgcctcgtgtttaactgtccaactttttggggtcagtacacaac < 1:4539894‑M1/4‑1 (MQ=255) acctatatgcctcgtgtttaactgtccaactttttggggtcagtacacaac < 1:1651870‑M1/4‑1 (MQ=255) cctatatgcctcgtgtttaactgtccaactttttggggtcagtacacaaca > 1:3045990‑M1/47‑51 (MQ=255) ctatatgcctcgtgtttaactgtccaactttttggggtcagtacacaacaa > 1:7658819‑M1/46‑51 (MQ=255) tatatgcctcgtgtttaactgtccaactttttggggtcagtacaCAACAAg < 1:1036753‑M1/7‑1 (MQ=255) tatatgcctcgtgtttaactgtccaactttttggggtcagtacaCAACAAg > 1:3527043‑M1/45‑51 (MQ=255) tatatgcctcgtgtttaactgtccaactttttggggtcagtacaCAACAAg < 1:479301‑M1/7‑1 (MQ=255) tatatgcctcgtgtttaactgtccaactttttggggtcagtacaCAACAAg > 1:3946289‑M1/45‑51 (MQ=255) atatgcctcgtgtttaactgtccaactttttggggtcagtacaCAACAAgg < 1:8538157‑M1/8‑1 (MQ=255) tatgcctcgtgtttaactgtccaactttttggggtcagtacaCAACAAGGc < 1:6026705‑M1/9‑1 (MQ=255) tatgcctcgtgtttaactgtccaactttttggggtcagtacaCAACAAGGc > 1:2862550‑M1/43‑51 (MQ=255) atgcctcgtgtttaactgtccaactttttggggtcagtacaCAACAAGGCt > 1:1794800‑M1/42‑51 (MQ=255) atgcctcgtgtttaactgtccaactttttggggtcagtacaCAACAAGGCt > 1:7654246‑M1/42‑51 (MQ=255) tgcctcgtgtttaactgtccaactttttggggtcagtacaCAACAAGGCTa > 1:6057047‑M1/41‑51 (MQ=255) gcctcgtgtttaactgtccaactttttggggtcagtacaCAACAAGGCTAc > 1:10778279‑M1/40‑51 (MQ=255) gcctcgtgtttaactgtccaactttttggggtcagtacaCAACAAGGCTAc < 1:280332‑M1/12‑1 (MQ=255) gcctcgtgtttaactgtccaactttttggggtcagtacaCAACAAGGCTAc < 1:10360736‑M1/12‑1 (MQ=255) cctcgtgtttaactgtccaactttttggggtcagtacaCAACAAGGCTACg > 1:452954‑M1/39‑51 (MQ=255) cctcgtgtttaactgtccaactttttggggtcagtacaCAACAAGGCTACg > 1:6431039‑M1/39‑51 (MQ=255) ctcgtgtttaactgtccaactttttggggtcagtacaCAACAAGGCTACgg < 1:4160081‑M1/14‑1 (MQ=255) ctcgtgtttaactgtccaactttttggggtcagtacaCAACAAGGCTACgg > 1:1465634‑M1/38‑51 (MQ=255) ctcgtgtttaactgtccaactttttggggtcagtacaCAACAAGGCTACgg > 1:656839‑M1/38‑51 (MQ=255) gtgtttaactgtccaactttttggggtcagtacaCAACAAGGCTACGGCaa < 1:6967630‑M1/17‑1 (MQ=255) tgtttaactgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAg > 1:6736476‑M1/34‑51 (MQ=255) gtttaactgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGt < 1:8638936‑M1/19‑1 (MQ=255) gtttaactgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGt < 1:1744192‑M1/19‑1 (MQ=255) ttaactgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTCa > 1:2254605‑M1/31‑51 (MQ=255) ttaactgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTCa < 1:3322228‑M1/21‑1 (MQ=255) ttaactgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTCa > 1:158701‑M1/31‑51 (MQ=255) ttaactgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTCa < 1:9021154‑M1/21‑1 (MQ=255) ttaactgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTCa < 1:8731969‑M1/21‑1 (MQ=255) taactgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTCAc < 1:8722883‑M1/22‑1 (MQ=255) taactgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTCAc > 1:2978150‑M1/30‑51 (MQ=255) taactgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTCAc < 1:7805976‑M1/22‑1 (MQ=255) aactgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTCAc < 1:9546760‑M1/22‑1 (MQ=255) aactgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTCACt > 1:2614239‑M1/29‑51 (MQ=255) actgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTg > 1:10120820‑M1/28‑51 (MQ=255) actgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTg > 1:8979621‑M1/28‑51 (MQ=255) actgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTg < 1:2542387‑M1/24‑1 (MQ=255) actgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTg > 1:1600181‑M1/28‑51 (MQ=255) ctgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGa < 1:5861525‑M1/25‑1 (MQ=255) tgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGaa < 1:6352842‑M1/26‑1 (MQ=255) tgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGaa < 1:4266018‑M1/26‑1 (MQ=255) tgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGaa > 1:8650181‑M1/26‑51 (MQ=255) tgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGaa < 1:10378460‑M1/26‑1 (MQ=255) gtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGaaa > 1:9075441‑M1/25‑51 (MQ=255) gtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGaaa > 1:10760482‑M1/25‑51 (MQ=255) tccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAAt > 1:1072240‑M1/24‑51 (MQ=255) caactttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATgg < 1:2024958‑M1/30‑1 (MQ=255) actttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATggg < 1:10213508‑M1/31‑1 (MQ=255) actttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGt > 1:2603035‑M1/20‑51 (MQ=255) ctttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTg < 1:8936576‑M1/33‑1 (MQ=255) tttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGc > 1:9366455‑M1/18‑51 (MQ=255) tttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGc > 1:10195925‑M1/18‑51 (MQ=255) tttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGc < 1:9159827‑M1/34‑1 (MQ=255) tttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGc < 1:4990459‑M1/34‑1 (MQ=255) ttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATggg < 1:5251252‑M1/31‑1 (MQ=255) ttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCt > 1:2732393‑M1/17‑51 (MQ=255) ttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCt < 1:8919972‑M1/35‑1 (MQ=255) ttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCt > 1:953715‑M1/17‑51 (MQ=255) ttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCt > 1:2846975‑M1/17‑51 (MQ=255) ttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCa > 1:6986219‑M1/15‑51 (MQ=255) ttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCa < 1:3927741‑M1/37‑1 (MQ=255) tggggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCaa < 1:1793504‑M1/38‑1 (MQ=255) tggggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCaa < 1:121283‑M1/38‑1 (MQ=255) gggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATc > 1:3594296‑M1/12‑51 (MQ=255) gggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATc > 1:1893714‑M1/12‑51 (MQ=255) gggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATc > 1:4972155‑M1/12‑51 (MQ=255) ggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCa > 1:6389115‑M1/11‑51 (MQ=255) ggtcagtacaCAACAAGGCCACGGCAAGTCACTGAAATGGGTGCTCAATCa < 1:8178385‑M1/41‑1 (MQ=255) gtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCAt > 1:94995‑M1/10‑51 (MQ=255) gtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCAt < 1:5650602‑M1/42‑1 (MQ=255) gtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCAt < 1:8262949‑M1/42‑1 (MQ=255) tcagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATa < 1:4556593‑M1/43‑1 (MQ=255) tcagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATa < 1:10177912‑M1/43‑1 (MQ=255) cagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATAc > 1:6450839‑M1/8‑51 (MQ=255) cagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATAc > 1:3810983‑M1/8‑51 (MQ=255) agtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATAcc > 1:6799931‑M1/7‑51 (MQ=255) agtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATAcc < 1:10308008‑M1/45‑1 (MQ=255) gtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATAccc > 1:7939632‑M1/6‑51 (MQ=255) tacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATACCCg > 1:10685501‑M1/5‑51 (MQ=255) tacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATACCCg > 1:3730986‑M1/5‑51 (MQ=255) acaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATACCCGt > 1:3341063‑M1/4‑51 (MQ=255) acaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATACCCGt > 1:2087854‑M1/4‑51 (MQ=255) caCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATACCCGTc < 1:3330547‑M1/49‑1 (MQ=255) caCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATACCCGTc < 1:582944‑M1/49‑1 (MQ=255) caCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATACCCGTc < 1:5325187‑M1/49‑1 (MQ=255) caCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATACCCGNc > 1:1433096‑M1/3‑51 (MQ=255) aCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATACCCGTCt > 1:6222857‑M1/2‑51 (MQ=255) caacaaGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATACCCGTCtg < 1:1896627/51‑1 (MQ=255) | CGCGAGCAAAAGCGACTGCGTGGTTTTGGTCGCATGTTGGTAGCCCTGCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATACCCGTCTG > REL606/2092979‑2093077 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |