New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 664688 =NA (NA)86 (0.910) 50/80 NT NA noncoding (1/1443 nt) IS150 repeat region
?REL606 = 2086597 NA (NA)intergenic (‑1018/‑527) yegL/yegM hypothetical protein/multidrug efflux system, subunit A

Only 100 of 104 total aligned reads displayed.

ATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/664734‑664688
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCCCCTCCC  <  REL606/2086597‑2086548
                                                                                                 
ATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGG                                                <  1:8035862/51‑1
 TTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGT                                               >  1:6116644/1‑51
  TAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTA                                              >  1:5666235/1‑51
  TAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTA                                              <  1:1222830/51‑1
  TAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTA                                              >  1:7469929/1‑51
  TAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTA                                              <  1:782521/51‑1
   AGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAA                                             <  1:349138/51‑1
   AGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAA                                             >  1:7434153/1‑51
    GGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAG                                            <  1:455261/51‑1
    GGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAG                                            <  1:9301190/51‑1
     GGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGC                                           >  1:10861821/1‑51
     GGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGC                                           <  1:4975743/51‑1
     GGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGC                                           <  1:115978/51‑1
      GGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCC                                          >  1:1545187/1‑51
       GCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCG                                         <  1:6023684/51‑1
       GCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCG                                         <  1:4919254/51‑1
       GCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCG                                         <  1:1888961/51‑1
       GCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCG                                         <  1:8366895/51‑1
        CTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGA                                        >  1:1867388/1‑51
        CTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGA                                        <  1:1802411/51‑1
        CTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGA                                        >  1:5644598/1‑51
        CTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGA                                        >  1:698495/1‑51
         TATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGAC                                       >  1:5974287/1‑51
         TATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGAC                                       >  1:6882115/1‑51
         TATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGAC                                       <  1:7982462/51‑1
         TATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGAC                                       >  1:976623/1‑51
          ATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACG                                      >  1:2174318/1‑51
          ATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACG                                      <  1:4480637/51‑1
          ATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACG                                      >  1:7080292/1‑51
          ATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACG                                      <  1:3394058/51‑1
            TCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGAT                                    <  1:789650/51‑1
            TCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGAT                                    >  1:7369604/1‑51
              CATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTT                                  <  1:8490306/51‑1
              CATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTT                                  >  1:9340389/1‑51
              CATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACG                                      >  1:5190929/1‑47
               ATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTC                                 <  1:4014038/51‑1
               ATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTC                                 <  1:10935705/51‑1
               ATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTC                                 <  1:3263434/51‑1
               ATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTC                                 >  1:9865043/1‑51
               ATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTC                                 >  1:2082346/1‑51
                TTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCA                                >  1:3224567/1‑51
                TTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCA                                >  1:8021165/1‑51
                 TTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAG                               >  1:807052/1‑51
                 TTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAG                               >  1:3971534/1‑51
                 TTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAG                               >  1:4926010/1‑51
                  TCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGC                              <  1:2705860/51‑1
                  TCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGC                              >  1:5078518/1‑51
                   CATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCG                             <  1:2926634/51‑1
                   CATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCG                             >  1:792575/1‑51
                   CATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCG                             <  1:7918930/51‑1
                   CATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCG                             >  1:9891096/1‑51
                    ATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGG                            <  1:4785851/51‑1
                    ATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGG                            >  1:9176666/1‑51
                    ATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGG                            <  1:5570785/51‑1
                    ATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGG                            >  1:10690907/1‑51
                     TCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGGG                           <  1:7276914/51‑1
                      CGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGGGA                          <  1:5468957/51‑1
                      CGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGGGA                          >  1:8842286/1‑51
                      CGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGGGA                          >  1:7093545/1‑51
                        TCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGGGACG                        >  1:5539726/1‑51
                        TCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGGGACG                        <  1:4156470/51‑1
                        TCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGGGACG                        <  1:10891527/51‑1
                        TCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGGGACG                        >  1:4472533/1‑51
                        TCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGGGACG                        <  1:148751/51‑1
                         CCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGGGACGC                       >  1:4249343/1‑51
                          CAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGGGACGCT                      <  1:6144570/51‑1
                           AACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGGGACGCTG                     <  1:6991622/51‑1
                           AACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGGGACGCTG                     >  1:10932840/1‑51
                            ACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGA                    <  1:6632435/51‑1
                              atAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAA                  >  1:7969660/3‑51
                              AAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAA                  >  1:3049359/1‑51
                              AAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAA                  >  1:7969659/1‑51
                              AAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAA                  >  1:5848273/1‑51
                               AAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAAC                 <  1:5228620/51‑1
                               AAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAAC                 >  1:8477291/1‑51
                                AATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACG                >  1:381188/1‑51
                                 ATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGG               >  1:7074710/1‑51
                                  TGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGG              <  1:1203845/51‑1
                                  TGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGG              >  1:1393490/1‑51
                                      TGCAGTACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAG          >  1:3126952/1‑51
                                       GCAGTACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGC         <  1:6860313/51‑1
                                        CAGTACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCC        >  1:1182544/1‑51
                                        CAGTACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCC        >  1:9542296/1‑51
                                         AGTACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCCC       >  1:9808666/1‑51
                                         AGTACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCCC       >  1:1126205/1‑51
                                          GTACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCCCC      >  1:6578262/1‑51
                                          GTACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCCCC      >  1:9635935/1‑51
                                           TACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCCCCT     <  1:2185260/51‑1
                                            ACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCCCCTC    >  1:1937282/1‑51
                                            ACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCCCCTC    <  1:4772082/51‑1
                                            ACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCCCCTC    >  1:7751909/1‑51
                                             CAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCCCCTCC   >  1:10031377/1‑51
                                             CAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCCCCTCC   >  1:3645374/1‑51
                                              AGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCCCCTCCC  >  1:2137280/1‑51
                                              AGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCCCCTCCC  >  1:3607937/1‑51
                                              AGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCCCCTCCC  >  1:703219/1‑51
                                              AGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCCCCTCCC  >  1:7905737/1‑51
                                              AGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCCCCTCCC  <  1:5113709/51‑1
                                              AGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCCCCTCCC  >  1:6749221/1‑51
                                              AGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAA           >  1:3081355/1‑42
                                                                                                 
ATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/664734‑664688
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCCCCTCCC  <  REL606/2086597‑2086548

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.