Predicted mutation
evidence seq id position mutation annotation gene description
RA REL606 1,166,129 T→C intergenic (+156/‑55) fabG → / → acpP 3‑oxoacyl‑[acyl‑carrier‑protein] reductase/acyl carrier protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*REL6061,166,1290TC100.0% 262.7 / NA 69intergenic (+156/‑55)fabG/acpP3‑oxoacyl‑[acyl‑carrier‑protein] reductase/acyl carrier protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (37/32);  total (37/32)

AAATCGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATTTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAGGAAATT  >  REL606/1166082‑1166176
                                               |                                               
aaaTCGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTta                                              <  1:6495121/51‑1 (MQ=255)
aaaTCGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTta                                              <  1:14372/51‑1 (MQ=255)
   tCGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATac                                           >  1:5489268/1‑51 (MQ=255)
    cGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATaca                                          >  1:571296/1‑51 (MQ=255)
      tGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACt                                        >  1:6969283/1‑51 (MQ=255)
      tGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACt                                        <  1:5232459/51‑1 (MQ=255)
       ggTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTa                                       <  1:2012158/51‑1 (MQ=255)
        gTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTAc                                      <  1:1002410/51‑1 (MQ=255)
        gTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTAc                                      <  1:4576976/51‑1 (MQ=255)
         tAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACg                                     <  1:4495637/51‑1 (MQ=255)
         tAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACg                                     <  1:3424691/51‑1 (MQ=255)
          aaGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGa                                    >  1:6359545/1‑51 (MQ=255)
          aaGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGa                                    >  1:3721012/1‑51 (MQ=255)
           aGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGaa                                   <  1:3106773/51‑1 (MQ=255)
            gACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGaaa                                  <  1:179379/51‑1 (MQ=255)
             aCCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGaaaa                                 <  1:116528/51‑1 (MQ=255)
              ccTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAAc                                <  1:273911/51‑1 (MQ=255)
              ccTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAAc                                <  1:4503122/51‑1 (MQ=255)
              ccTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAAc                                >  1:3916870/1‑51 (MQ=255)
               cTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAAcc                               >  1:5131125/1‑51 (MQ=255)
               cTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAAcc                               <  1:730219/51‑1 (MQ=255)
                 gCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCAt                             <  1:2101739/51‑1 (MQ=255)
                 gCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCAt                             >  1:5660610/1‑51 (MQ=255)
                  ccGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATc                            >  1:7014245/1‑51 (MQ=255)
                  ccGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATc                            <  1:6955642/51‑1 (MQ=255)
                  ccGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATc                            <  1:5206738/51‑1 (MQ=255)
                   cGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATcg                           <  1:3776243/51‑1 (MQ=255)
                   cGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATcg                           >  1:6150525/1‑51 (MQ=255)
                    gggATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATcgc                          >  1:4163137/1‑51 (MQ=255)
                     ggATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATcgcg                         <  1:2948374/51‑1 (MQ=255)
                      gATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGa                        >  1:5610006/1‑51 (MQ=255)
                       aTTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGaa                       <  1:6970056/51‑1 (MQ=255)
                       aTTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGaa                       >  1:1881513/1‑51 (MQ=255)
                       aTTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGaa                       <  1:6926118/51‑1 (MQ=255)
                        tttAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGaaa                      >  1:1763369/1‑51 (MQ=255)
                        tttAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGaaa                      >  1:4215368/1‑51 (MQ=255)
                        tttAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGaaa                      >  1:1335173/1‑51 (MQ=255)
                         ttAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAg                     >  1:7099509/1‑51 (MQ=255)
                         ttAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAg                     >  1:2490977/1‑51 (MQ=255)
                         ttAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAg                     >  1:1621402/1‑51 (MQ=255)
                         ttAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAg                     <  1:7106246/51‑1 (MQ=255)
                          tAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGc                    >  1:7240094/1‑51 (MQ=255)
                          tAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGc                    >  1:880278/1‑51 (MQ=255)
                          tAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGc                    >  1:6938887/1‑51 (MQ=255)
                            gTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCGa                  >  1:4470610/1‑51 (MQ=255)
                             ttGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAg                 <  1:5079842/51‑1 (MQ=255)
                             ttGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAg                 >  1:6509730/1‑51 (MQ=255)
                               gCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGtt               <  1:753403/51‑1 (MQ=255)
                                 aaaTTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGtttt             <  1:4183253/51‑1 (MQ=255)
                                 aaaTTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGtttt             >  1:971732/1‑51 (MQ=255)
                                 aaaTTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGtttt             <  1:3235120/51‑1 (MQ=255)
                                 aaaTTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGtttt             >  1:6004183/1‑51 (MQ=255)
                                  aaTTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTg            <  1:6286472/51‑1 (MQ=255)
                                   aTTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGa           <  1:5853366/51‑1 (MQ=255)
                                    tttttCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGAt          >  1:1146997/1‑51 (MQ=255)
                                    tttttCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGAt          >  1:6980480/1‑51 (MQ=255)
                                     ttttCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATa         >  1:1899247/1‑51 (MQ=255)
                                     ttttCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATa         >  1:4349597/1‑51 (MQ=255)
                                      tttCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAg        >  1:761612/1‑51 (MQ=255)
                                      tttCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAg        >  1:6018412/1‑51 (MQ=255)
                                      tttCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAg        >  1:7210296/1‑51 (MQ=255)
                                      tttCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAg        <  1:6378834/51‑1 (MQ=255)
                                      tttCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAg        >  1:1474655/1‑51 (MQ=255)
                                       ttCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAgg       <  1:5470457/51‑1 (MQ=255)
                                       ttCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAgg       <  1:3601456/51‑1 (MQ=255)
                                        tCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAGGa      >  1:6086742/1‑51 (MQ=255)
                                         cAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAGGaa     >  1:3401089/1‑51 (MQ=255)
                                            cATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAGGAAAtt  >  1:2119448/1‑51 (MQ=255)
                                            cATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAGGAAAtt  <  1:1659544/51‑1 (MQ=255)
                                               |                                               
AAATCGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATTTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAGGAAATT  >  REL606/1166082‑1166176

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: