| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 18002 = | 0 (0.000) | 74 (0.930) | 50/100 | 0.3 | 100% | coding (515/1167 nt) | nhaA | pH‑dependent sodium/proton antiporter |
| ? | REL606 | 588495 = | NA (NA) | noncoding (1/1977 nt) | IS150 | repeat region | |||||
GATGGCTCTGGCTATTATCGACGATCTTGGGGCCATCATTATCATCGCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTCGCGGCT > REL606/17955‑18051 | attaggggctattccatttcatcgtccaacaaaatgggtgcagtacaCAtt > 1:5421729‑M1/48‑51 (MQ=255) taggggctattccatttcatcgtccaacaaaatgggtgcagtacaCATTGt > 1:2840853‑M1/46‑51 (MQ=255) aggggctattccatttcatcgtccaacaaaatgggtgcagtacaCATTGtt > 1:5729368‑M1/45‑51 (MQ=255) aggggctattccatttcatcgtccaacaaaatgggtgcagtacaCATTGtt < 1:3686299‑M1/7‑1 (MQ=255) aggggctattccatttcatcgtccaacaaaatgggtgcagtacaCATTGtt > 1:4046259‑M1/45‑51 (MQ=255) aggggctattccatttcatcgtccaacaaaatgggtgcagtacaCATTGtt > 1:6473989‑M1/45‑51 (MQ=255) gctattccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTac > 1:4746362‑M1/41‑51 (MQ=255) tattccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTacac < 1:5607464‑M1/13‑1 (MQ=255) tattccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTacac > 1:6315713‑M1/39‑51 (MQ=255) tattccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTacac < 1:706233‑M1/13‑1 (MQ=255) attccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACt < 1:1897916‑M1/14‑1 (MQ=255) ttccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTa > 1:4771664‑M1/37‑51 (MQ=255) ttccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTa < 1:6244151‑M1/15‑1 (MQ=255) tccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTaa > 1:7224218‑M1/36‑51 (MQ=255) tccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTaa < 1:692623‑M1/16‑1 (MQ=255) ccatttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAAt > 1:5445771‑M1/35‑51 (MQ=255) catttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATg < 1:3237715‑M1/18‑1 (MQ=255) catttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATg < 1:4613610‑M1/18‑1 (MQ=255) atttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGa > 1:2261168‑M1/33‑51 (MQ=255) atttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGa < 1:468826‑M1/19‑1 (MQ=255) atttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGa < 1:6909003‑M1/19‑1 (MQ=255) atttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGa > 1:6419578‑M1/33‑51 (MQ=255) tttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGAc > 1:3735482‑M1/32‑51 (MQ=255) ttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACt < 1:5800155‑M1/21‑1 (MQ=255) ttcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACt < 1:6406224‑M1/21‑1 (MQ=255) tcatcgtccaacaaaatgggtgcagtacaTATTGTTCTACACTAATGACtt > 1:7045498‑M1/30‑51 (MQ=255) tcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACtt > 1:4449971‑M1/30‑51 (MQ=255) tcatcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACtt < 1:6850855‑M1/22‑1 (MQ=255) atcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTAt < 1:6955487‑M1/24‑1 (MQ=255) atcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTAt > 1:3757464‑M1/28‑51 (MQ=255) atcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTAt > 1:4441774‑M1/28‑51 (MQ=255) tcgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATc < 1:4790929‑M1/25‑1 (MQ=255) cgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCg > 1:952966‑M1/26‑51 (MQ=255) cgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCg > 1:3149095‑M1/26‑51 (MQ=255) cgtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCg > 1:5368504‑M1/26‑51 (MQ=255) gtccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGa < 1:5121930‑M1/27‑1 (MQ=255) tccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGAt < 1:82956‑M1/28‑1 (MQ=255) tccaacaaaatgggtgcagtacaCATTGTTCCACACTAATGACTTATCGAt < 1:5786359‑M1/28‑1 (MQ=255) ccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATg > 1:7108468‑M1/23‑51 (MQ=255) ccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATg > 1:4312539‑M1/23‑51 (MQ=255) ccaacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATg > 1:4080227‑M1/23‑51 (MQ=255) caacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATgg < 1:3349240‑M1/30‑1 (MQ=255) caacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATgg > 1:4006197‑M1/22‑51 (MQ=255) caacaaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATgg < 1:4193978‑M1/30‑1 (MQ=255) caaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCct < 1:73581‑M1/33‑1 (MQ=255) caaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCct > 1:2881537‑M1/19‑51 (MQ=255) caaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCct < 1:3114566‑M1/33‑1 (MQ=255) aaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATTGATGGCctc > 1:5888895‑M1/18‑51 (MQ=255) aaaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCctc > 1:6034059‑M1/18‑51 (MQ=255) aaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCctct < 1:5212489‑M1/35‑1 (MQ=255) aaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCctct < 1:558243‑M1/35‑1 (MQ=255) aaatgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCctct < 1:5153194‑M1/35‑1 (MQ=255) atgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCctctct < 1:4401352‑M1/37‑1 (MQ=255) tgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCtt > 1:5691278‑M1/14‑51 (MQ=255) tgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCtt > 1:2538871‑M1/14‑51 (MQ=255) tgggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCtt > 1:4070530‑M1/14‑51 (MQ=255) gggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTg < 1:215773‑M1/39‑1 (MQ=255) ggtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTg < 1:5871268‑M1/39‑1 (MQ=255) gtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGc > 1:6895784‑M1/11‑51 (MQ=255) gtgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGc > 1:373434‑M1/11‑51 (MQ=255) tgcagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCg < 1:753838‑M1/42‑1 (MQ=255) gcagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGt < 1:1036025‑M1/43‑1 (MQ=255) gcagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGt > 1:2007798‑M1/9‑51 (MQ=255) cagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTc > 1:3378579‑M1/8‑51 (MQ=255) cagtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTc > 1:3031532‑M1/8‑51 (MQ=255) gtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTcgc < 1:5730205‑M1/46‑1 (MQ=255) gtacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTc < 1:2508305‑M1/44‑1 (MQ=255) tacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTcgcg > 1:158461‑M1/5‑51 (MQ=255) tacaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTcgcg < 1:2788782‑M1/47‑1 (MQ=255) acaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTCGCgg < 1:1745469‑M1/48‑1 (MQ=255) acaCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTCGCgg > 1:3468999‑M1/4‑51 (MQ=255) caCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTCGCGGc < 1:3217304‑M1/49‑1 (MQ=255) aCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTCGCGGCt > 1:178576‑M1/2‑51 (MQ=255) aCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTCGCGGCt < 1:6936591‑M1/50‑1 (MQ=255) | GATGGCTCTGGCTATTATCGACGATCTTGGGGCCATCATTATCATCGCATTGTTCTACACTAATGACTTATCGATGGCCTCTCTTGGCGTCGCGGCT > REL606/17955‑18051 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |