New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3651091 =NA (NA)119 (1.490) 59/100 0.1 NA noncoding (1/1443 nt) IS150 repeat region
?REL606 3697154 = NA (NA)coding (278/4134 nt) rhsA rhsA element core protein RshA

Only 100 of 119 total aligned reads displayed.

CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/3651140‑3651091
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAAC  >  REL606/3697154‑3697203
                                                                                                    
CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG                                                   <  1:3728344/51‑1
CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG                                                   <  1:111707/51‑1
CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG                                                   >  1:1176783/1‑51
CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG                                                   >  1:6754307/1‑51
CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG                                                   >  1:4046524/1‑51
CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG                                                   <  1:5936756/51‑1
CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG                                                   <  1:5882123/51‑1
CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG                                                   >  1:5816343/1‑51
CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG                                                   >  1:5804992/1‑51
CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG                                                   >  1:2489831/1‑51
CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG                                                   <  1:2868800/51‑1
CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG                                                   >  1:1518868/1‑51
CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG                                                   >  1:5794715/1‑51
CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG                                                   >  1:1566738/1‑51
CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG                                                   <  1:3405482/51‑1
CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG                                                   >  1:5343732/1‑51
CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG                                                   >  1:1614740/1‑51
CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG                                                   <  1:4450811/51‑1
CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG                                                   <  1:3172997/51‑1
CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG                                                   >  1:1763208/1‑51
CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG                                                   >  1:4985228/1‑51
CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG                                                   <  1:374474/51‑1
    TTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCC                                               >  1:3708384/1‑51
    TTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCC                                               >  1:3488912/1‑51
     TAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCG                                              <  1:3825851/51‑1
      AGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGG                                             <  1:5054625/51‑1
      AGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGG                                             >  1:3763087/1‑51
      AGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGG                                             >  1:4166461/1‑51
       GGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGC                                            <  1:1452997/51‑1
         GGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTG                                          <  1:1474395/51‑1
           CTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGA                                        <  1:3470380/51‑1
            TATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAA                                       >  1:2421700/1‑51
             ATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAA                                      <  1:5053155/51‑1
             ATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAA                                      <  1:3697011/51‑1
             ATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAA                                      >  1:2101698/1‑51
             ATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAA                                      <  1:2678827/51‑1
             ATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAA                                      <  1:3001960/51‑1
              TTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAA                                     >  1:4645430/1‑51
              TTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAA                                     >  1:2214157/1‑51
              TTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAA                                     >  1:3777017/1‑51
              TTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAA                                     >  1:6285992/1‑51
              TTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAA                                     <  1:440646/51‑1
               TCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAAT                                    >  1:3649392/1‑51
               TCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAAT                                    <  1:5505767/51‑1
                CCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATG                                   >  1:3481673/1‑51
                 CATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGC                                  <  1:1116319/51‑1
                  ATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCC                                 <  1:2317060/51‑1
                  ATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCC                                 <  1:1189583/51‑1
                   TTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCT                                >  1:1632562/1‑51
                   TTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCT                                <  1:5920162/51‑1
                   TTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAA                                     >  1:341480/1‑46
                    TTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTG                               >  1:1888994/1‑51
                    TTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTG                               <  1:138504/51‑1
                    TTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTG                               <  1:4625507/51‑1
                     TCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGC                              <  1:3278723/51‑1
                      CATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCG                             >  1:2513872/1‑51
                        TCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGA                           >  1:1257943/1‑51
                        TCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGA                           >  1:86768/1‑51
                         CGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGAT                          >  1:5631787/1‑51
                         CGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGAT                          >  1:1572235/1‑51
                         CGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGAT                          <  1:2965767/51‑1
                         CGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGAT                          >  1:6511669/1‑51
                          GTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATA                         >  1:1313036/1‑51
                          GTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATA                         <  1:3296924/51‑1
                          GTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATA                         >  1:6321599/1‑51
                          GTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATA                         <  1:824209/51‑1
                           TCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATAT                        >  1:2875717/1‑51
                             CAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCC                      <  1:897076/51‑1
                             CAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCC                      <  1:5446153/51‑1
                              AACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCG                     <  1:4376703/51‑1
                               ACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGC                    >  1:375671/1‑51
                                 AAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCTGCTT                  >  1:5446230/1‑51
                                 AAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTT                  >  1:156689/1‑51
                                 AAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTT                  >  1:271976/1‑51
                                 AAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTT                  <  1:4983928/51‑1
                                  AAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTA                 <  1:2018944/51‑1
                                   AATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTAC                <  1:7182272/51‑1
                                    ATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACA               >  1:2540505/1‑51
                                    ATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACA               <  1:5481341/51‑1
                                    ATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACA               >  1:390845/1‑51
                                     TGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAG              >  1:4906595/1‑51
                                     TGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAG              >  1:6815700/1‑51
                                      GGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGC             >  1:6545004/1‑51
                                       GGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCT            <  1:1183555/51‑1
                                       GGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCT            <  1:5522607/51‑1
                                       GGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGC             <  1:2533307/50‑1
                                        GTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTG           >  1:447845/1‑51
                                          GCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCG         <  1:4654844/51‑1
                                          GCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCG         >  1:5132735/1‑51
                                           CAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGC        >  1:4609225/1‑51
                                            AGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCG       <  1:3469519/51‑1
                                            AGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCG       <  1:4501060/51‑1
                                            AGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCG       <  1:154328/51‑1
                                             GTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGA      <  1:1670957/51‑1
                                              TACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGAT     >  1:6095175/1‑51
                                              TACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGAT     >  1:6188039/1‑51
                                              TACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGAT     <  1:1428035/51‑1
                                               ACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATA    <  1:5419565/51‑1
                                               ACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATA    >  1:2937917/1‑51
                                                 AGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAAC  >  1:2916499/1‑51
                                                                                                    
CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/3651140‑3651091
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAAC  >  REL606/3697154‑3697203

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.