New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 3651091 = | NA (NA) | 119 (1.490) | 59/100 | 0.1 | NA | noncoding (1/1443 nt) | IS150 | repeat region |
? | REL606 | 3697154 = | NA (NA) | coding (278/4134 nt) | rhsA | rhsA element core protein RshA |
Only 100 of 119 total aligned reads displayed.
CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3651140‑3651091 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAAC > REL606/3697154‑3697203 CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG < 1:3728344/51‑1 CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG < 1:111707/51‑1 CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG > 1:1176783/1‑51 CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG > 1:6754307/1‑51 CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG > 1:4046524/1‑51 CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG < 1:5936756/51‑1 CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG < 1:5882123/51‑1 CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG > 1:5816343/1‑51 CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG > 1:5804992/1‑51 CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG > 1:2489831/1‑51 CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG < 1:2868800/51‑1 CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG > 1:1518868/1‑51 CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG > 1:5794715/1‑51 CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG > 1:1566738/1‑51 CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG < 1:3405482/51‑1 CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG > 1:5343732/1‑51 CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG > 1:1614740/1‑51 CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG < 1:4450811/51‑1 CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG < 1:3172997/51‑1 CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG > 1:1763208/1‑51 CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG > 1:4985228/1‑51 CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG < 1:374474/51‑1 TTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCC > 1:3708384/1‑51 TTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCC > 1:3488912/1‑51 TAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCG < 1:3825851/51‑1 AGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGG < 1:5054625/51‑1 AGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGG > 1:3763087/1‑51 AGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGG > 1:4166461/1‑51 GGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGC < 1:1452997/51‑1 GGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTG < 1:1474395/51‑1 CTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGA < 1:3470380/51‑1 TATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAA > 1:2421700/1‑51 ATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAA < 1:5053155/51‑1 ATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAA < 1:3697011/51‑1 ATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAA > 1:2101698/1‑51 ATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAA < 1:2678827/51‑1 ATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAA < 1:3001960/51‑1 TTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAA > 1:4645430/1‑51 TTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAA > 1:2214157/1‑51 TTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAA > 1:3777017/1‑51 TTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAA > 1:6285992/1‑51 TTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAA < 1:440646/51‑1 TCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAAT > 1:3649392/1‑51 TCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAAT < 1:5505767/51‑1 CCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATG > 1:3481673/1‑51 CATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGC < 1:1116319/51‑1 ATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCC < 1:2317060/51‑1 ATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCC < 1:1189583/51‑1 TTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCT > 1:1632562/1‑51 TTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCT < 1:5920162/51‑1 TTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAA > 1:341480/1‑46 TTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTG > 1:1888994/1‑51 TTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTG < 1:138504/51‑1 TTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTG < 1:4625507/51‑1 TCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGC < 1:3278723/51‑1 CATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCG > 1:2513872/1‑51 TCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGA > 1:1257943/1‑51 TCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGA > 1:86768/1‑51 CGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGAT > 1:5631787/1‑51 CGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGAT > 1:1572235/1‑51 CGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGAT < 1:2965767/51‑1 CGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGAT > 1:6511669/1‑51 GTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATA > 1:1313036/1‑51 GTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATA < 1:3296924/51‑1 GTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATA > 1:6321599/1‑51 GTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATA < 1:824209/51‑1 TCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATAT > 1:2875717/1‑51 CAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCC < 1:897076/51‑1 CAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCC < 1:5446153/51‑1 AACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCG < 1:4376703/51‑1 ACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGC > 1:375671/1‑51 AAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCTGCTT > 1:5446230/1‑51 AAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTT > 1:156689/1‑51 AAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTT > 1:271976/1‑51 AAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTT < 1:4983928/51‑1 AAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTA < 1:2018944/51‑1 AATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTAC < 1:7182272/51‑1 ATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACA > 1:2540505/1‑51 ATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACA < 1:5481341/51‑1 ATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACA > 1:390845/1‑51 TGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAG > 1:4906595/1‑51 TGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAG > 1:6815700/1‑51 GGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGC > 1:6545004/1‑51 GGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCT < 1:1183555/51‑1 GGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCT < 1:5522607/51‑1 GGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGC < 1:2533307/50‑1 GTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTG > 1:447845/1‑51 GCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCG < 1:4654844/51‑1 GCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCG > 1:5132735/1‑51 CAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGC > 1:4609225/1‑51 AGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCG < 1:3469519/51‑1 AGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCG < 1:4501060/51‑1 AGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCG < 1:154328/51‑1 GTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGA < 1:1670957/51‑1 TACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGAT > 1:6095175/1‑51 TACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGAT > 1:6188039/1‑51 TACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGAT < 1:1428035/51‑1 ACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATA < 1:5419565/51‑1 ACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATA > 1:2937917/1‑51 AGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAAC > 1:2916499/1‑51 CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3651140‑3651091 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAAC > REL606/3697154‑3697203 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |