New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2774435 =NA (NA)67 (0.900) 49/94 0.2 NA noncoding (1443/1443 nt) IS150 repeat region
?REL606 = 2822512 NA (NA)noncoding (443/768 nt) IS1 repeat region

Only 100 of 133 total aligned reads displayed.

ACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2774481‑2774435
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acaGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGCG  <  REL606/2822512‑2822463
                                                                                                 
ACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGTCT                                                <  1:4500720/51‑1
ACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGTCT                                                <  1:3590843/51‑1
 CCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGTCTC                                               >  1:4945076/1‑51
  CTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGTCTCC                                              <  1:4223773/51‑1
    ATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGTCTCCGG                                            >  1:6045939/1‑51
     TATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGTCTCCGGA                                           <  1:4769782/51‑1
      ATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGTCTCCGGAA                                          <  1:1634693/51‑1
      ATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGTCTCCGGAA                                          >  1:4198783/1‑51
      ATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGTCTCCGGAA                                          >  1:3856798/1‑51
       TGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGTCTCCGGAAG                                         <  1:1154455/51‑1
         CCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGTCTCCGGAAGAC                                       <  1:5140443/51‑1
          CTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGTCTCCGGAAGACG                                      <  1:3100278/51‑1
          CTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGTCTCCGGAAGACG                                      <  1:437735/51‑1
           TCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGTCTCCGGAAGACGG                                     >  1:5356126/1‑51
            CGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGTCTCCGGAAGACGGT                                    >  1:3998439/1‑51
             GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGTCTCCGGAAGACGGTT                                   >  1:3048814/1‑51
             GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGTCTCCGGAAGACGGTT                                   >  1:6752089/1‑51
               GTTTAACTGTCCAACTTTTTGGGGTCAGTACAGTCTCCGGAAGACGGTTGT                                 >  1:2860155/1‑51
               GTTTAACTGTCCAACTTTTTGGGGTCAGTACAGTCTCCGGAAGACGGTTGT                                 >  1:5426309/1‑51
               GTTTAACTGTCCAACTTTTTGGGGTCAGTACAGTCTCCGGAAGACGGTTGT                                 <  1:434673/51‑1
               GTTTAACTGTCCAACTTTTTGGGGTCAGTACAGTCTCCGGAAGACGGTTGT                                 >  1:6523130/1‑51
                TTTAACTGTCCAACTTTTTGGGGTCAGTACAGTCTCCGGAAGACGGTTGTT                                <  1:5981628/51‑1
                TTTAACTGTCCAACTTTTTGGGGTCAGTACAGTCTCCGGAAGACGGTTGTT                                >  1:4844067/1‑51
                 TTAACTGTCCAACTTTTTGGGGTCAGTACAGTCTCCGGAAGACGGTTGTTG                               <  1:6716371/51‑1
                 TTAACTGTCCAACTTTTTGGGGTCAGTACAGTCTCCGGAAGACGGTTGTTG                               <  1:4057561/51‑1
                 TTAACTGTCCAACTTTTTGGGGTCAGTACAGTCTCCGGAAGACGGTTGTTG                               >  1:7263421/1‑51
                 TTAACTGTCCAACTTTTTGGGGTCAGTACAGTCTCCGGAAGACGGTTGTTG                               >  1:5302598/1‑51
                  TAACTGTCCAACTTTTTGGGGTCAGTACAGTCTCCGGAAGACGGTTGTTGC                              <  1:2523402/51‑1
                  TAACTGTCCAACTTTTTGGGGTCAGTACAGTCTCCGGAAGACGGTTGTTGC                              >  1:2878899/1‑51
                   AACTGTCCAACTTTTTGGGGTCAGTACAGTCTCCGGAAGACGGTTGTTGCG                             >  1:7063380/1‑51
                     CTGTCCAACTTTTTGGGGTCAGTACAGTCTCCGGAAGACGGTTGTTGCGCA                           <  1:3989193/51‑1
                     CTGTCCAACTTTTTGGGGTCAGTACAGTCTCCGGAAGACGGTTGTTGCGCA                           >  1:4855574/1‑51
                      TGTCCAACTTTTTGGGGTCAGTACAGTCTCCGGAAGACGGTTGTTGCGCAC                          >  1:1497361/1‑51
                      TGTCCAACTTTTTGGGGTCAGTACAGTCTCCGGAAGACGGTTGTTGCGCAC                          >  1:4411801/1‑51
                      TGTCCAACTTTTTGGGGTCAGTACAGTCTCCGGAAGACGGTTGTTGCGCAC                          >  1:6024819/1‑51
                       GTCCAACTTTTTGGGGTCAGTACAGTCTCCGGAAGACGGTTGTTGCGCACG                         >  1:2229673/1‑51
                         CCAACTTTTTGGGGTCAGTACAGTCTCCGGAAGACGGTTGTTGCGCACGTA                       <  1:2622556/51‑1
                          CAACTTTTTGGGGTCAGTACAGTCTCCGGAAGACGGTTGTTGCGCACGTAT                      >  1:5814944/1‑51
                           AACTTTTTGGGGTCAGTACAGTCTCCGGAAGACGGTTGTTGCGCACGTATT                     >  1:2890647/1‑51
                           AACTTTTTGGGGTCAGTACAGTCTCCGGAAGACAGTTGTTGCGCACGTATT                     <  1:1718599/51‑1
                            ACTTTTTGGGGTCAGTACAGTCTCCGGAAGACGGTTGTTGCGCACGTATTC                    <  1:4294142/51‑1
                              TTTTTGGGGTCAGTACAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGG                  >  1:813767/1‑51
                              TTTTTGGGGTCAGTACAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGG                  <  1:1401994/51‑1
                               TTTTGGGGTCAGTACAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGT                 <  1:2719056/51‑1
                               TTTTGGGGTCAGTACAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGT                 >  1:4020039/1‑51
                                  TGGGGTCAGTACAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAA              >  1:3974386/1‑51
                                   GGGGTCAGTACAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAAC             <  1:1059119/51‑1
                                   GGGGTCAGTACAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAAC             >  1:7114681/1‑51
                                    GGGTCAGTACAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACG            <  1:765687/51‑1
                                        CAGTACAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACT        >  1:1973392/1‑51
                                         AGTACAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTA       <  1:2251411/51‑1
                                          GTACAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTAT      <  1:243944/51‑1
                                          GTACAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTAT      <  1:5503382/51‑1
                                           TACAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATG     >  1:2720868/1‑51
                                            ACAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGG    >  1:1050923/1‑51
                                            ACAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGG    <  1:4677557/51‑1
                                            ACAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGG    >  1:7135735/1‑51
                                            ACAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGG    >  1:4523099/1‑51
                                            ACAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGG    <  1:1957620/51‑1
                                            ACAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGG    >  1:2756838/1‑51
                                            ACAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGG    <  1:5022097/51‑1
                                            ACAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGG    <  1:5091383/51‑1
                                            ACAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGG    <  1:6460067/51‑1
                                            ACAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGG    <  1:6313361/51‑1
                                            ACAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGG    <  1:3254621/51‑1
                                            ACAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGG    <  1:4412017/51‑1
                                            ACAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGG    <  1:6013525/51‑1
                                            ACAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGG    <  1:4293012/51‑1
                                            ACAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGG    <  1:5786415/51‑1
                                            ACAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGG    >  1:4239281/1‑51
                                            ACAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGG    <  1:564313/51‑1
                                             CAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGC   <  1:870722/51‑1
                                             CAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGC   >  1:5538157/1‑51
                                             CAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGC   <  1:4853563/51‑1
                                             CAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGC   <  1:3009028/51‑1
                                             CAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGC   <  1:529702/51‑1
                                             CAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGC   >  1:5764938/1‑51
                                             CAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGC   >  1:5398527/1‑51
                                             CAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGC   <  1:3358888/51‑1
                                              AGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGCG  <  1:3819434/51‑1
                                              AGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGCG  <  1:5326992/51‑1
                                              AGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGCG  >  1:3819691/1‑51
                                              AGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGCG  <  1:5656120/51‑1
                                              AGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGCG  <  1:6082638/51‑1
                                              AGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGCG  >  1:6176479/1‑51
                                              AGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGCG  <  1:5505874/51‑1
                                              AGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGCG  <  1:6319309/51‑1
                                              AGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGCG  >  1:5136860/1‑51
                                              AGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGCG  <  1:4144723/51‑1
                                              AGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGCG  <  1:5010409/51‑1
                                              AGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGCG  >  1:223036/1‑51
                                              AGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGCG  >  1:6833173/1‑51
                                              AGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGCG  >  1:6894110/1‑51
                                              AGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGCG  >  1:4781489/1‑51
                                              AGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGCG  >  1:1877205/1‑51
                                              AGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGCG  >  1:5559545/1‑51
                                              AGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGCG  >  1:1687026/1‑51
                                              AGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGCG  <  1:1431615/51‑1
                                              AGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGCG  <  1:105197/51‑1
                                              AGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGCG  >  1:447806/1‑51
                                                                                                 
ACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2774481‑2774435
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acaGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGCG  <  REL606/2822512‑2822463

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.