| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| MC JC | REL606 | 3,894,997 | Δ6,138 bp | 100% | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 3893700–3894993 | 3901134 | 6142–7435 | 3 [0] | [0] 43 | [insJ‑5]–[yieO] | [insJ‑5],insK‑5,rbsD,rbsA,rbsC,rbsB,rbsK,rbsR,[yieO] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 3894996 | NA (NA) | 34 (1.280) | 29/276 | NT | 100% | noncoding (1443/1443 nt) | IS150 | repeat region |
| ? | REL606 | 3901135 = | 0 (0.000) | coding (1285/1428 nt) | yieO | predicted multidrug or homocysteine efflux system | |||||
AACTTACTCCGATTCTGATGGAACGCGGTTCGGCTTAGATTTACGCTGTCTTTTGATCAAATTATTACCATCGGTTGTTTTCAGAAGCATGAACATTGCTGCTGAAGCAACAGTAATAATGCCCATTGTGATAAACGTATAGTGGAATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGCCGCACTTACAGCAACGCCTAAACTGATAGACAGTTGCTGCGTGACCGCCAGAACACTGTTACCGCTGCTGGCGTTGTCATCGGTCAGATCGGC > REL606/3900989‑3901279 | gtataagagacagctgttacggaatatattgaatactacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTg < 1:72155‑M2/4‑1 (MQ=255)gaactgaaggatgttgttacggaatatattgaatactacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTg > 2:117905‑M2/147‑150 (MQ=255)gaactgaaggatgctgttacggaatatattgaatactacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTg < 2:98602‑M2/4‑1 (MQ=255)gaactgaaggatgctgttacggaatatattgaatactacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTg < 2:133127‑M2/4‑1 (MQ=255)gaactgaaggatgctgttacggaatatattgaatactacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTg < 2:504048‑M2/4‑1 (MQ=255)gaactgaaggatgctgttacggaatatattgaatactacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgaataacggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTg < 2:446777‑M2/4‑1 (MQ=255) gaaggatgctgttacggaatatattgaatactacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGa > 2:438531‑M2/142‑150 (MQ=255) aaggatgctgttacggaatatattgaatactacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGAc < 2:385431‑M2/10‑1 (MQ=255) ctgttacggaatatattgaatactacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaattgctgtctcttatac > 2:72368‑M2/134‑137 (MQ=255) gttacggaatatattgaatactacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTtgt > 2:655221‑M2/132‑150 (MQ=255) tacggaatatattgaatactacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGc < 2:338637‑M2/21‑1 (MQ=255) atattgaatactacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTGGTGCCTTCCAtt > 1:5212‑M2/122‑150 (MQ=255) attgaatactacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTcc < 1:653297‑M2/31‑1 (MQ=255) attgaatactacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTcc > 2:422039‑M2/120‑150 (MQ=255) gaatactacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTc > 2:443196‑M2/117‑150 (MQ=255) tactacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGGGCCTTCCATTCCTTCATa > 1:299679‑M2/114‑150 (MQ=255) ctacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATaaa > 2:296100‑M2/112‑150 (MQ=255) tacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAAc > 1:150041‑M2/111‑150 (MQ=255) cagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGa < 2:378836‑M2/48‑1 (MQ=255) tctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGCCGCACTTACAGCAACGCCTAAAc < 1:117559‑M2/75‑1 (MQ=255) tctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGCCGCACTTACAGCAACGCCTAAAc < 2:435516‑M2/75‑1 (MQ=255) caattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGCCGCACTTACAGCAACGCCTAAACTGATAGAc > 2:71340‑M2/68‑150 (MQ=255) ttgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGCCGCACTTACAGCAACGCCTAAACTGATAGACAGt < 2:93658‑M2/86‑1 (MQ=255) gacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGCCGCACTTACAGCAACGCCTAAACTGATAGACAGTTGCTGCGTGACCGCCa > 1:84813‑M2/49‑150 (MQ=255) cctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGCCGCACTTACAGCAACGCCTAAACTGATAGACAGTTGCTGCGTGACCGCCAGa > 2:150933‑M2/47‑150 (MQ=255) cctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGCCGCACTTACAGCAACGCCTAAACTGATAGACAGTTGCTGCGTGACCGCCAGa > 2:523321‑M2/47‑150 (MQ=255) tatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGCCGCACTTACAGCAACGCCTAAACTGATAGACAGTTGCTGCGTGACCGCCAGAac < 1:609685‑M2/106‑1 (MQ=255) tatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGCCGCACTTACAGCAACGCCTAAACTGATAGACAGTTGCTGCGTGACCGCCAGAac < 2:150468‑M2/106‑1 (MQ=255) tatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGCCGCACTTACAGCAACGCCTAAACTGATAGACAGTTGCTGCGTGACCGCCAGAac > 2:398825‑M2/45‑150 (MQ=255) atatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGCCGCACTTACAGCAACGCCTAAACTGATAGACAGTTGCTGCGTGACCGCCAGAaca > 2:468416‑M2/44‑150 (MQ=255) tatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGCCGCACTTACAGCAACGCCTAAACTGATAGACAGTTGCTGCGTGACCGCCAGAacac < 2:218546‑M2/108‑1 (MQ=255) cgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGCCGCACTTACAGAAACGCCTAAACTGATAGACAGTTGCTGCGTGACCGCCAGAACACTGTTAcc > 2:595497‑M2/36‑150 (MQ=255) gtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGCCGCACTTACAGCAACGCCTAAACTGATAGACAGTTGCTGCGTGACCGCCAGAACACTGTTACCg > 2:489716‑M2/35‑150 (MQ=255) gtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGCCGCACTTACAGCAACGCCTAAACTGATAGACAGTTGCTGCGTGACCGCCAGAACACTGTTACCg < 2:348074‑M2/116‑1 (MQ=255) gtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGCCGCACTTACAGCAACGCCTAAACTGATAGACAGTTGCTGCGTGACCGCCAGAACACTGTTACCg > 2:221663‑M2/35‑150 (MQ=255) gtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGCCGCACTTACAGCAACGCCTAAACTGATAGACAGTTGCTGCGTGACCGCCAGAACACTGTTACCg > 2:416907‑M2/35‑150 (MQ=255) tgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGCCGCACTTACAGCAACGCCTAAACTGATAGACAGTTGCTGCGTGACCGCCAGAACACTGTTACCgc < 2:306697‑M2/117‑1 (MQ=255) gtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGCCGCACTTACAGCAACGCCTAAACTGATAGACAGTTGCTGCGTGACCGCCAGAACACTGTTACCGCTGCTGGCGt > 2:677296‑M2/25‑150 (MQ=255) aacgttttgaggtcagtacaATTGTTCGACAGTAGTTGTGCCTTCCATTGCTTCATAAACGCGAAGGACGGCCGCACTTACAGCAACGCCTAAACTGATAGACAGTTGCTGCGTGACCGCCAGAACACTGTTACCGCTGCTGGCGTTGTc < 1:295260‑M2/130‑1 (MQ=255) tttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGCCGCACTTACAGCAACGCCTAAACTGATAGACAGTTGCTGCGTGACCGCCAGAACACTGTTACCGCTGCTGGCGTTGTCATc < 2:300528‑M2/133‑1 (MQ=255) cagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGCCGCACTTACAGCAACGCCTAAACTGATAGACAGTTGCTGCGTGACCGCCAGAACACTGTTACCGCTGCTGGCGTTGTCATCGGTCAGATCg > 1:92594‑M2/8‑150 (MQ=255) gtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGCCGCACTTACAGCAACGCCTAAACTGATAGACAGTTGCTGCGTGACCGCCAGAACACTGTTACCGCTGCTGGCGTTGTCATCGGTCAGATCGGc > 2:19432‑M2/6‑150 (MQ=255) gtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGCCGCACTTACAGCAACGCCTAAACTGATAGACAGTTGCTGCGTGACCGCCAGAACACTGTTACCGCTGCTGGCGTTGTCATCGGTCAGATCGGc > 2:562247‑M2/6‑150 (MQ=255) | AACTTACTCCGATTCTGATGGAACGCGGTTCGGCTTAGATTTACGCTGTCTTTTGATCAAATTATTACCATCGGTTGTTTTCAGAAGCATGAACATTGCTGCTGAAGCAACAGTAATAATGCCCATTGTGATAAACGTATAGTGGAATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGCCGCACTTACAGCAACGCCTAAACTGATAGACAGTTGCTGCGTGACCGCCAGAACACTGTTACCGCTGCTGGCGTTGTCATCGGTCAGATCGGC > REL606/3900989‑3901279 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |