Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC REL606 2,405,131 IS1 (–) +9 bp 100% coding (168‑176/1347 nt) fadL → long‑chain fatty acid outer membrane transporter

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 2263507NA (NA)35 (1.310) 26/278 NT 100% noncoding (1/768 nt) IS1 repeat region
?REL606 2405131 = 0 (0.000)coding (168/1347 nt) fadL long‑chain fatty acid outer membrane transporter
* ? REL606 = 24051390 (0.000)32 (1.200) 23/278 NT 100% coding (176/1347 nt) fadL long‑chain fatty acid outer membrane transporter
?REL606 2407442 = NA (NA)noncoding (768/768 nt) IS1 repeat region

TCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGTCCGGCAGATAAAGACTAATCACCTGTAGGCCAGATAAGACGCGTTAGTGT  >  REL606/2263375‑2263559
                                                                                                                                    |                                                    
tCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGTCCGGCAGATAAAGAc                                     <  2:659571/150‑1 (MQ=40)
                ccGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGTCCGGCAGATAAAGACTAATCACCTGTAGGcc                     <  1:197341/150‑1 (MQ=255)
                                   cAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGTCCGGCAGATAAAGACTAATCACCTGTAGGCCAGATAAGACGCGTTAgtgt  <  2:492456/150‑1 (MQ=255)
                                                                                                                                    |                                                    
TCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGTCCGGCAGATAAAGACTAATCACCTGTAGGCCAGATAAGACGCGTTAGTGT  >  REL606/2263375‑2263559

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.