Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_007779298,1840AC42.3% 72.7 / 19.6 53Y659D (TAT→GAT) yagRoxidoreductase with molybdenum‑binding domain
Reads supporting (aligned to +/- strand):  ref base A (22/8);  new base C (0/22);  total (22/31)
Fisher's exact test for biased strand distribution p-value = 2.20e-08
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

CGACACCTTTGGCCTTCATCGGGGAGGATATGGGGTCGGTATCATCCAGGAAAATCACCTCCTGTTTTGGGATATCCGCATGAACCGGCACCTCATACCCCGCCATATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGAC  >  NC_007779/298088‑298283
                                                                                                |                                                                                                   
cGACACCTTTGGCCTTCATCGGGGAGGATATGGGGTCGGTATCATCCAGGAAAATCACCTCCTGTTTTGGGATATCCGCATGAACCGGCACCTCATAcccc                                                                                                 <  3:846930/101‑1 (MQ=255)
 gACACCTTTGGCCTTCATCGGGGAGGATATGGGGTCGGTATCATCCAGGAAAATCACCTCCTGTTTTGGGATATCCGCATGAACCGGCACCTCATACCCCg                                                                                                <  3:333964/101‑1 (MQ=255)
   cacCTTTGGCCTTCATCGGGGAGGATATGGGGTCGGTATCATCCAGGAAAATCACCTCCTGTTTTGGGATATCCGCATGAACCGGCACCTCATACCCCGcc                                                                                              <  1:348695/101‑1 (MQ=255)
     ccTTTGGCCTTCATCGGGGAGGATATGGGGTCGGTATCATCCAGGAAAATCACCTCCTGTTTTGGGATATCCGCATGAACCGGCACCTCATACCCCGCCat                                                                                            <  3:543224/101‑1 (MQ=255)
         tGGCCTTCATCGGGGAGGATATGGGGTCGGTATCATCCAGGAAAATCACCTCCTGTTTTGGGATATCCGCATGAACCGGCACCTCATACCCCGCCATATCg                                                                                        >  1:1457919/1‑101 (MQ=255)
          ggCCTTCATCGGGGAGGATATGGGGTCGGTATCATCCAGGAAAATCACCTCCTGTTTTGGGATATCCGCATGAACCGGCACCTCATCCCCCGCCATATCGt                                                                                       <  3:622858/101‑1 (MQ=255)
              ttCATCGGGGAGGATATGGGGTCGGTATCATCCAGGAAAATCCCCTCCTGTTTTGGGATATCCGCATGAACCGGCACCTCATACCCCGCCATATCGTGAtt                                                                                   <  1:303866/101‑1 (MQ=255)
              ttCATCGGGGAGGATATGGGGCCGGTATCATCCAGGAAAATCACCTCCTGTTTTGGGATATCCGCATGAACCGGCACCTCATACACCGCCATATCGTGAtt                                                                                   >  1:204033/1‑101 (MQ=255)
                cATCGGGGAGGATATGGGGTCGGTATCATCCAGGAAAATCACCTCCTGTTTTGGGATATCCGCATGAACCGGCACCTCATACCCCGCCATATCGTGATTaa                                                                                 >  1:968720/1‑101 (MQ=255)
                cATCGGGGAGGATATGGGGTCGGTATCATCCAGGAAAATCACCTCCTGTTTTGGGATATCCGCATGAACCGGCACCTCATACCCCGCCATATCGTGATTaa                                                                                 >  1:480011/1‑101 (MQ=255)
                 aTCGGGGAGGATATGGGGTCGGTATCATCCAGGAAAATCACCTCCTGTTTTGGGATATCCGCATGAACCGGCACCTCATACCCCGCCATATCGTGATTAAc                                                                                >  1:26507/1‑101 (MQ=255)
                  tCGGGGAGGATATGGGGTCGGTATCATCCAGGAAAATCCCCTCCTGTTTTGGGATATCCGCATGAACCGGCACCTCATCCCCCGCCATATCGTGATTAACg                                                                               <  3:854319/101‑1 (MQ=255)
                  tCGGGGAGGATATGGGGTCGGTATCATCCAGGAAAATCACCTCCTGTTTTGGGATATCCGCATGAACCGGCACCTCATACCCCGCCATATCGTGATTAACg                                                                               >  1:244031/1‑101 (MQ=255)
                    ggggAGGATATGGGGTCGGTATCATCCAGGAAAATCCCCTCCTGTTTTGGGATATCCGCATGAACCGGCACCTCATACCCCGCCATATCGTGATTAACGaa                                                                             <  1:616405/101‑1 (MQ=255)
                    ggggAGGATATGGGGTCGGTATCATCCAGGAAAATCACCTCCTGTTTTGGGATATCCGCATGAACCGGCACCTCATACCCCGCCATATCGTGATTAACGaa                                                                             >  1:741625/1‑101 (MQ=255)
                      ggaggaTATGGGGTCGGTATCATCCAGGAAAATCCCCTCCTGTTTTGGGATATCCGCATGAACCGGCACCTCATACCCCGCCATATCGTGATTAACGAAGt                                                                           <  1:556809/101‑1 (MQ=255)
                        aggaTATGGGGTCGGTATCATCCAGGAAAATCACCTCCTGTTTTGGGATATCCGCATGAACCGGCACCTCATCCCCCGCCATATCGTGATTAACGAAGTAg                                                                         <  3:1357605/101‑1 (MQ=255)
                           atatGGGGTCGGTATCATCCAGGAAAATCCCCTCCTGTTTTGGGATATCCGCATGAACCGGCCCCTCATCCCCCGCCATATCGTGATTAACGAAGTAGccc                                                                      <  1:1061053/101‑1 (MQ=255)
                            tatGGGGTCGGTATCATCCAGGAAAATCCCCTCCTGTTTTGGGATATCCGCATGAACCGGCACCTCATCCCCCGCCATATCGTGATTAACGAAGTAGCCCa                                                                     <  3:1537423/101‑1 (MQ=255)
                             atGGGGTCGGTATCATCCAGGAAAATCCCCTCCTGTTTTGGGATATCCGCATGAACCGGCCCCTCATCCCCCGCCATATCGTGATTAACGAAGTAGCCCaa                                                                    <  1:1350614/101‑1 (MQ=255)
                              tagagccGGTATCATACAGGAAAATCGCCTCCTATTTTGGAATACCCGGATGAACCGNCACCTCATCCCCCGCCATATCGTGATTAACGAAGTAGCCCaaa                                                                   <  3:1154079/95‑1 (MQ=255)
                              tGGGGTCGGTATCATCCAGGAAAATCACCTCCTGTTTTGGGATATCCGCATGACCCGGCCCCTCATACCCCGCCATATCGTGATTAACGAAGTAGCCCaaa                                                                   <  1:1540948/101‑1 (MQ=255)
                               ggggTCGGTATCATCCAGGAAAATCCCCTCCTGTTTTGGGATATCCGCATGAACCGGCACCTCATCCCCCGCCATATCGTGATTAACGAAGTAGCCCAAAc                                                                  <  3:635608/101‑1 (MQ=255)
                               ggggTCGGTATCATCCAGGAAAATCACCTCCTGTTTTGGGATATCCGCATGAACCGGCACCTCATACCCCGCCATATCGTGATTAACGAAGTAGCCCAAAc                                                                  >  3:382357/1‑101 (MQ=255)
                                       tATCATCCAGTAAACCCTCCCCCTGTTTTGGCATATCCCCAAGAGCGGGCACCACTTTCCCCGCCATATCGTGATTAACGAAGTAGCCCAAACGGTCATcc                                                          <  1:1190880/101‑1 (MQ=255)
                                         acatcCAGGCAACTCTCCTCCTGTTTTGGGATATCCGCATGAACCGGCACCTCATACCCCGCCATATCGTGATTAACGAAGTAGCCCAAACGGTCATCCAc                                                        >  4:59841/2‑101 (MQ=255)
                                           atcCAGGAAAATCACCTCCTGTTTTGGGATATCCGCATGAACCGGCACCTCATACCCAGCCATATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCg                                                      >  1:884796/1‑101 (MQ=255)
                                            tcCAGGAAAATCCCCTCCTGTTTTGGGATATCCGCATGACCCGGCACCTCATCCCCCGCCATATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGc                                                     <  3:1346229/101‑1 (MQ=255)
                                               aGGAAAATCCCCTCCTGTTTTGGGATATCCGCATGAACCGGCACCTCATCCCCCGCCATATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAg                                                  <  3:386086/101‑1 (MQ=255)
                                               aGGAAAATCACCTCCTGTTTTGGGATATCCGCATGAACCGGCACCTCATACCCCGCCATATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAg                                                  >  3:1564665/1‑101 (MQ=255)
                                                  aaaaTCACCTCCTGTTTTGGGATATCCGCATGAACCGGCACCTCATACCCCGCCATATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGctc                                               >  1:1127972/1‑101 (MQ=255)
                                                   aaaTCCCCTCTTGTTTTGGGATATCCGCATGACCCGGCACCTCATCCCCCGCCATATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGctcc                                              <  3:1087928/101‑1 (MQ=255)
                                                      tcccctcctGTTTTGGGATATCCGCATGAACCGGCCCCTCATCCCCCGCCATATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCtcctcc                                           <  3:1474408/98‑1 (MQ=255)
                                                        aCCTCCTGTTTTGGGATATCCGCATGAACCGGCACCTCATACCCCGCCATATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCAt                                         >  1:828852/1‑101 (MQ=255)
                                                          ctcctGTTTTGGGATACCCGCATGAACCGGCCCCTCATCCCCCGCCATATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCa                                       <  3:611067/101‑1 (MQ=255)
                                                          ctcctGTTTGGGGATATCCGCATGACCCGGCCCCTCATCCCCCGCCATATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCGCCGCCATCa                                       <  4:85326/101‑1 (MQ=255)
                                                           tcctGTTTTGGGATATCCGCATGAACCGGCACCTCATCCCCCGCCATATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAg                                      <  3:954903/101‑1 (MQ=255)
                                                            cttGTTTTGGGATATCCGCATGAACCGCCACCTCATCCCCCGCCATATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGt                                     <  3:35184/99‑1 (MQ=255)
                                                             ctGTTTTGGGATATCCGCATGAACCGGCACCTCATACCCCGCCATATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTg                                    >  3:1111928/1‑101 (MQ=255)
                                                                ttttGGGATATCCGCATGAACCGGCACCTCATACCCCGCCATATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCcg                                 >  1:735/1‑101 (MQ=255)
                                                                  ttGGGATAGCCGAATGAACCGGCACCTCATCCCCCGCCATATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCcgcg                               <  3:173997/101‑1 (MQ=255)
                                                                        tatCCGCATGAACCGGCACCTCATACCCCGCCATATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCgcccatg                         >  1:846928/1‑101 (MQ=255)
                                                                          tCCGCATGACCCGGCACCTCATCCCCCGCCATATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCgcccatgcc                       <  3:122822/101‑1 (MQ=255)
                                                                           ccGCATGAACCGGCACCTCATACCCCGCCATATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCgcccatgccc                      >  1:1539251/1‑101 (MQ=255)
                                                                            ctaatgccccGCCACCCCATCCCCCGCCATATCGTGATTAACGAATTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGAGCCGCtcccatgccca                     <  1:735671/93‑1 (MQ=255)
                                                                             gCATGAACCGGCACCTCATACCCCGCCATATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCAGCgcccatgcccat                    >  1:599257/1‑101 (MQ=255)
                                                                                tGAACCGGCACCTCATCCCCCGCCATATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGt                 <  3:1403558/101‑1 (MQ=255)
                                                                                      ggCCCCTCATCCCCCGCCATATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTgc           <  1:352321/101‑1 (MQ=255)
                                                                                        cACCTCATACCCCGCCATATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTgcgc         >  3:1163685/1‑101 (MQ=255)
                                                                                         aCCTCATACCCCGCCATATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGcc        >  3:597292/1‑101 (MQ=255)
                                                                                            tCATCCCCCGCCATATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAAt     <  1:9608/101‑1 (MQ=255)
                                                                                             cATACCCCGCCATATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATg    >  1:900257/1‑101 (MQ=255)
                                                                                               tACCCCGCCATATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGAc  >  1:1537124/1‑101 (MQ=255)
                                                                                                |                                                                                                   
CGACACCTTTGGCCTTCATCGGGGAGGATATGGGGTCGGTATCATCCAGGAAAATCACCTCCTGTTTTGGGATATCCGCATGAACCGGCACCTCATACCCCGCCATATCGTGATTAACGAAGTAGCCCAAACGGTCATCCACCGCCAGCTCCTCCATCAGTGCCGCGCCCATGCCCATAGTCATTGCGCCAATGAC  >  NC_007779/298088‑298283

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑