| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_007779 | 4,310,363 | Δ1,199 bp | insH–[alsK] | insH, [alsK] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_007779 | 4310363–4311557 | 4311561 | 5–1199 | 31 [0] | [0] 31 | insH–[alsK] | insH,[alsK] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_007779 | = 4310362 | 0 (0.000) | 29 (0.650) | 24/192 | 0.8 | 100% | intergenic (‑286/‑69) | yjcS/insH | alkyl sulfatase/IS5 element protein |
| ? | NC_007779 | 4311562 = | 0 (0.000) | coding (916/1029 nt) | alsK | D‑allose kinase | |||||
TAATATGAGTCGTTTTATGTGTTTATTATATATATTGTACCTGTCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAG > NC_007779/4310262‑4310459 | taataTGAGTCGTTTTATGTGTTTATTATATATATTGTACCTGTCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAG < 1:109527‑M1/101‑1 (MQ=255) aataTGAGTCGTTTTATGTGTTTATTATATATATTGTACCTGTCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGc > 1:231573‑M1/1‑100 (MQ=255) atGAGTCGTTTTATGTGTTTATTATATATATTGTACCTGTCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGcaca < 3:1311682‑M1/101‑5 (MQ=255) aGTCGTTTTATGTGTTTATTATATATATTGTACCTGTCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGcacagaa < 3:86521‑M1/101‑8 (MQ=255) gTCGTTTTATGTGTTTATTATATATATTGTACCTGTCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGcacagaac < 3:358481‑M1/101‑9 (MQ=255) ttttATGTGTTTATTATATATATTGTACCTGTCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGcacagaactgtg > 3:382087‑M1/1‑89 (MQ=255) tgtTTATTATATATATTGTACCTGTCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGcacagaactgtggcaaaaa < 4:43061‑M1/101‑20 (MQ=255) tgtTTATTATATATATTGTACCTGTCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCGTGAGcacagaactgtggcaaaaa < 4:146180‑M1/101‑20 (MQ=255) tattatATATATTGTACCTGTCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGcacagaactgtggcaaaaaacgt > 2:31451‑M1/1‑78 (MQ=255) tatatTGTACCTGTCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGcacagaactgtggcaaaaaacgttgatgcg > 2:37455‑M1/1‑71 (MQ=255) tatTGTACCTGTCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGcacagaactgtggcaaaaaacgttgatgcgcc > 3:122199‑M1/1‑69 (MQ=255) tatTGTACCTGTCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGcacagaactgtggcaaaaaacgttgatgcgcc > 3:643116‑M1/1‑69 (MQ=255) atTGTACCTGTCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGcacagaactgtggcaaaaaacgttgatgcgcca > 1:300862‑M1/1‑68 (MQ=255) cTGTCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGcacagaactgtggcaaaaaacgttgatgcgccaatattgc < 1:1297201‑M1/101‑41 (MQ=255) cTGTCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGcacagaactgtggcaaaaaacgttgatgcgccaatattgc > 3:1081310‑M1/1‑61 (MQ=255) gTCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGcacagaactgtggcaaaaaacgttgatgcgccaatattgctg < 3:1302020‑M1/101‑43 (MQ=255) acaGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGcacagaactgtggcaaaaaacgttgatgcgccaatattgctgcaccctgag > 1:1006488‑M1/1‑50 (MQ=255) aCATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGcacagaactgtggcaaaaaacgttgatgcgccaatattgctgcaccctgagcgccatta < 1:797801‑M1/101‑60 (MQ=255) gcgcTACTGTGCCAACGTTTTACTCATGGGGCTTTAGcacagaactgtggcaaaaaacgttgatgcgccaatattgctgcaccctgagcgccattaaagtc > 1:1492327‑M1/1‑37 (MQ=255) tACTGTGCCAACGTTTTACTCATGGGGCTTTAGcacagaactgtggcaaaaaacgttgatgcgccaatattgctgcaccctgagcgccattaaagtcagaa > 2:34180‑M1/1‑33 (MQ=255) tACTGTGCCAACGTTTTACTCATGGGGCTTTAGcacagaactgtggcaaaaaacgttgatgcgccaatattgctgcaccctgagcgccattaaagtcagaa > 1:709533‑M1/1‑33 (MQ=255) cTGTGCCAACGTTTTACTCATGGGGCTTTAGcacagaactgtggcaaaaaacgttgatgcgccaatattgctgcaccctgagcgccattaaagtcagaaga < 3:232975‑M1/101‑71 (MQ=255) tgtgCCAACGTTTTACTCATGGGGCTTTAGcacagaactgtggcaaaaaacgttgatgcgccaatattgctgcaccctgagcgccattaaagtcagaagat < 1:99433‑M1/101‑72 (MQ=255) aaCGTTTTACTCATGGGGCTTTAGcacagaactgtggcaaaaaacgttgatgcgccaatattgctgcaccctgagcgccattaaaggcagaagaggaggcg < 4:34155‑M1/101‑78 (MQ=255) gTTTTACTCATGGGGCTTTAGcacagaactgtggcaaaaaacgttgatgcgccaatattgctgcaccctgagcgccattaaagtcagaagatgaggcggca > 1:1090522‑M1/1‑21 (MQ=255) cTCATGGGGCTTTAGcacagaactgtggcaaaaaacgttgatgcgccaatattgctgcaccctgagcgccattaaagtcagaagatgaggcggcaataaag > 1:1538635‑M1/1‑15 (MQ=255) cTCATGGGGCTTTAGcacagaactgtggcaaaaaacgttgatgcgccaatattgctgcaccctgagcgccattaaagtcagaagatgaggcggcaataaag > 1:959397‑M1/1‑15 (MQ=255) tGGGGCTTTAGcacagaactgtggcaaaaaacgttgatgcgccaatattgctgcaccctgagcgccattaaagtcagaagatgaggcggcaataaagcgca < 1:394417‑M1/101‑91 (MQ=255) tttAGcacagaactgtggcaaaaaacgttgatgcgccaatattgctgcaccctgagcgccattaaagtcagaagatgaggcggcaataaagcgcacgacct > 3:495908‑M1/1‑5 (MQ=255) tttAGcacagaactgtggcaaaaaacgttgatgcgccaatattgctgcaccctgagcgccattaaagtcagaagatgaggcggcaataaagcgcacgacca < 1:379185‑M1/101‑97 (MQ=255) ttAGcacagaactgtggcaaaaaacgttgatgcgccaatattgctgcaccctgagcgccattaaagtcagaagatgaggcggcaataaagcgcacgacctg > 1:1003144‑M1/1‑4 (MQ=255) | TAATATGAGTCGTTTTATGTGTTTATTATATATATTGTACCTGTCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAG > NC_007779/4310262‑4310459 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |