BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	GFP_Plasmid_Sequ	979 =	34493 (0.820)	10 (0.000) +CCTTTCGTCTTCAAGAATTAATTCCCAATTCC	7/136	2.2	0.085%	intergenic (–/–)	–/–	–/–
*	?	NC_007779	= 3464932	14 (0.300)	10 (0.000) +CCTTTCGTCTTCAAGAATTAATTCCCAATTCC	7/136	2.2	0.085%	noncoding (113/120 nt)	rrfB	5S ribosomal RNA
Rejected: Frequency below/above cutoff threshold.

Only 100 of 34953 total aligned reads displayed.

TTTCCAGTCGGGAAACCTGTCGTGCCAGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGATAATAATGGTTTCTTAGACGTCAGGTGGCACTTTTCGGGGAAATGTGCGCGGAACCCCTATTT  >  GFP_Plasmid_Sequ/879‑1080

tttCCAGTCGGGAAACCTGTCGTGCCAGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTg                                                                                                       >  3:1217668/1‑101 (MQ=255)

 ttCCAGTCGGGAAACCTGTCGTGCCAGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGc                                                                                                      <  3:13408/101‑1 (MQ=255)

 ttCCAGTCGGGAAACCTGTCGTGCCAGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGc                                                                                                      >  3:149280/1‑101 (MQ=255)

    cAGTCGGGAAACCTGTCGTGCCAGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTTCCTc                                                                                                   >  1:422638/1‑101 (MQ=255)

     aGTCGGGAAACCTGTCGTGCCAGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCg                                                                                                  <  3:653323/101‑1 (MQ=255)

     aGTCGGGAAACCTGTCGTGCCAGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCg                                                                                                  <  3:1098820/101‑1 (MQ=255)

     aGTCGGGAAACCTGTCGTGCCAGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCg                                                                                                  <  1:810439/101‑1 (MQ=255)

       tCGGGAAACCTGTCGTGCCAGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTg                                                                                                <  3:83550/101‑1 (MQ=255)

        cGGGAAACCTGTCGTGCCAGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGa                                                                                               <  3:865633/101‑1 (MQ=255)

         gggAAACCTGTCGTGCCAGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGAt                                                                                              >  1:1100671/1‑101 (MQ=255)

         gggAAACCTGTCGTGCCAGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGAt                                                                                              <  3:1128382/101‑1 (MQ=255)

          ggAAACCTGTCGTGCCAGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATa                                                                                             <  3:744208/101‑1 (MQ=255)

           gAAACCTGTCGTGCCAGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATAc                                                                                            <  2:137572/101‑1 (MQ=255)

           gAAACCTGTCGTGCCAGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATAc                                                                                            <  3:40646/101‑1 (MQ=255)

           gAAACCTGTCGTGCCAGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATAc                                                                                            <  3:1310089/101‑1 (MQ=255)

            aatccTGTCGTGCCAGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATACg                                                                                           <  3:1555771/98‑1 (MQ=255)

            aaaCCTGTCGTGCCAGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATACg                                                                                           >  3:227979/1‑101 (MQ=255)

            aaaCCTGTCGTGCCAGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATACg                                                                                           <  3:199332/101‑1 (MQ=255)

            aaaCCTGTCGTGCCAGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATACg                                                                                           >  3:1188014/1‑101 (MQ=255)

              aCCTGTCGTGCCAGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATACGcc                                                                                         >  3:558958/1‑101 (MQ=255)

                cTGTCGTGCCAGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATACGCCTa                                                                                       <  1:248852/101‑1 (MQ=255)

                 tGTCGTGCCAGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATACGCCTAt                                                                                      >  3:14324/1‑101 (MQ=255)

                  gTCGTGCCAGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATACGCCTAtt                                                                                     <  3:991939/101‑1 (MQ=255)

                   tCGTGCCAGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATACGCCTAttt                                                                                    <  3:349422/101‑1 (MQ=255)

                   tCGTGCCAGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATACGCCTAttt                                                                                    <  1:939687/101‑1 (MQ=255)

                   tCGTGCCAGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATACGCCTAttt                                                                                    <  1:1205965/101‑1 (MQ=255)

                     gTGCCAGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATACGCCTAttttt                                                                                  >  2:20506/1‑101 (MQ=255)

                     gTGCCAGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATACGCCTAttttt                                                                                  <  1:285976/101‑1 (MQ=255)

                       gCCAGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATACGCCTATTTTtat                                                                                <  1:616432/101‑1 (MQ=255)

                       gCCAGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATACGCCTATTTTtat                                                                                <  1:648178/101‑1 (MQ=255)

                        ccAGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATACGCCTATTTTtata                                                                               >  1:1513926/1‑101 (MQ=255)

                        ccAGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCGCGTGATACGCCGATTGGtata                                                                               <  4:155009/101‑1 (MQ=21)

                         cAGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATACGCCTATTTTTATAg                                                                              >  1:182021/1‑101 (MQ=255)

                          aGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATACGCCTATTTTTATAgg                                                                             <  1:215094/101‑1 (MQ=255)

                          aGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATACGCCTATTGTTATAgg                                                                             <  4:42733/101‑1 (MQ=255)

                           gCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATACGCCTATTTTTATAGGt                                                                            <  3:1157479/101‑1 (MQ=255)

                           gCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATACGCCTATTTTTATAGGt                                                                            >  3:588998/1‑101 (MQ=255)

                           gCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGAGGCTTGCGTATTGCTCTAGAAGAGGCCGCGAATTCTGCCTCGTGATAGGCCTATTTTTATAGGt                                                                            >  1:521057/1‑101 (MQ=25)

                            cTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATACGCCTATTTTTATAGGtt                                                                           >  1:1135355/1‑101 (MQ=255)

                            cTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATACGCCTATTTTTATAGGtt                                                                           >  1:709936/1‑101 (MQ=255)

                               cATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATACGCCTATTTTTATAGGTTAAt                                                                        <  1:777047/101‑1 (MQ=255)

                               cATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATACGCCTATTTTTATAGGTTAAt                                                                        <  3:1065967/101‑1 (MQ=255)

                               cATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATACGCCTATTTTTATAGGTTAAt                                                                        <  3:682738/101‑1 (MQ=255)

                                aTTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGCTACGCCTATTTTTATAGGTTAATg                                                                       >  3:1400877/1‑101 (MQ=255)

                                aTTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATACGCCTATTTTTATAGGTTAATg                                                                       >  3:436637/1‑101 (MQ=255)

                                aTTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATACGCCTATTTTTATAGGTTAATg                                                                       <  3:619735/101‑1 (MQ=255)

                                 ttAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATACGCCTATTTTTATAGGTTAATGt                                                                      <  3:1250888/101‑1 (MQ=255)

                                   aaTGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGCNCTAGAAGCGGCCGCGAATTCTGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCa                                                                    >  3:1005894/1‑101 (MQ=255)

                                    aTGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCAt                                                                   <  1:1477558/101‑1 (MQ=255)

                                     tGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATg                                                                  >  3:158577/1‑101 (MQ=255)

                                     tGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATACGCCTATTTTTATAGGTGAATGTCATg                                                                  <  4:122534/101‑1 (MQ=255)

                                      gAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGa                                                                 <  1:354743/101‑1 (MQ=255)

                                        aTCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGata                                                               >  1:554261/1‑101 (MQ=255)

                                          cGGCCAGCGCGCGGGGAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGataat                                                             <  3:1524549/101‑1 (MQ=255)

                                          cGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGataat                                                             <  1:1000374/101‑1 (MQ=255)

                                          cGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGataat                                                             <  2:110084/101‑1 (MQ=255)

                                          cGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGataat                                                             <  3:466287/101‑1 (MQ=255)

                                           ggCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGataata                                                            >  3:713034/1‑101 (MQ=255)

                                              cAACGCGCGGGGAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGATAATAATg                                                         >  3:77265/1‑101 (MQ=255)

                                              cAACGCGCGGGGAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGATAATAATg                                                         <  3:962636/101‑1 (MQ=255)

                                              cAACGCGCGGGGAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGATAATAATg                                                         >  1:746129/1‑101 (MQ=255)

                                                aCGCGCGGGGAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGATAATAATGGt                                                       <  1:906255/101‑1 (MQ=255)

                                                    gcgGGGAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGATAATAATGGTTTCt                                                   <  1:1069052/101‑1 (MQ=255)

                                                    gcgGGGAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGATAATAATGGTTTCt                                                   >  1:452450/1‑101 (MQ=255)

                                                     cgGGGAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGATAATAATGGTTTCtt                                                  >  3:1035742/1‑101 (MQ=255)

                                                      ggggAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGATAATAATGGTTTCTTa                                                 <  2:49958/101‑1 (MQ=255)

                                                      ggggAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGATAATAATGGTTTCTTa                                                 >  3:378308/1‑101 (MQ=255)

                                                            tggCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGATAATAATGGTTTCTTAGACGTc                                           >  1:1276165/2‑101 (MQ=255)

                                                             ggCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGATAATAATGGTTTCTTAGACGTCa                                          <  1:1035812/101‑1 (MQ=255)

                                                             ggCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCATCGTGATACGCCTATTTTTATAGGTTAATGTCATGATAATAATGGTTTCTTAGACGTCa                                          <  3:31792/101‑1 (MQ=255)

                                                               cGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGATAATAATGGTTTCTTAGACGTCAgg                                        >  2:76235/1‑101 (MQ=255)

                                                                ggTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGATAATAATGGTTTCTTAGACGTCAGGt                                       >  3:257373/1‑101 (MQ=255)

                                                                ggTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGATAATAATGGTTTCTTAGACGTCAGGt                                       >  3:495615/1‑101 (MQ=255)

                                                                ggTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGATAATAATGGTTTCTTAGACGTCAGGt                                       >  1:870996/1‑101 (MQ=255)

                                                                 gTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGATAATAATGGTTTCTTAGACGTCAGGTg                                      >  3:1282139/1‑101 (MQ=255)

                                                                  tttGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGATAATAATGGTTTCTTAGACGTCAGGTgg                                     <  1:317141/101‑1 (MQ=255)

                                                                   ttGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGATAATAATGGTTTCTTAGACGTCAGGTGGc                                    >  1:584473/1‑101 (MQ=255)

                                                                       gTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGATAATAATGGTTTCGTAGACGTCAGTTGGCACtt                                <  4:71298/101‑1 (MQ=255)

                                                                        tATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGATAATAATGGTTTCTTAGACGTCAGGTGGCACttt                               <  1:134725/101‑1 (MQ=255)

                                                                           tGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGATAATAATGGTTTCTTAGACGTCAGGTGGCACTTTTCg                            <  3:1462104/101‑1 (MQ=255)

                                                                            gCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGATAATAATGGTTTCTTAGACGTCAGGTGGCACTTTTCgg                           >  1:124125/1‑101 (MQ=255)

                                                                            gCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGATAATAATGGTTTCTTAGACGTCAGGTGGCACTTTTCgg                           <  3:1369646/101‑1 (MQ=255)

                                                                               ctAGAAGCGGCCGCGAATTCTGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGATAATAATGGTTTCTTAGACGTCAGGTGGCACTTTTCGGGGa                        <  3:931053/101‑1 (MQ=255)

                                                                               ctAGAAGCGGCCGCGAATTCTGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGATAATAATGGTTTCTTAGACGTCAGGTGGCACTTTTCGGGGa                        <  1:1411819/101‑1 (MQ=255)

                                                                                tAGAAGCGGCCGCGAATTCTGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGATAATAATGGTTTCTTAGACGTCAGGTGGCACTTTTCGGGGaa                       >  1:1381140/1‑101 (MQ=255)

                                                                                   aaGCGGCCGCGAATTCTGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGATAATAATGGTTTCTTAGACGTCAGGTGGCACTTTTCGGGGAAAtg                    >  1:388606/1‑101 (MQ=255)

                                                                                   aaGCGGCCGCGAATTCTGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGATAATAATGGTTTCTTAGACGTCAGGTGGCACTTTTCGGGGAAAtg                    <  3:169654/101‑1 (MQ=255)

                                                                                     gCGGCCGCGAATTCTGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGATAATAATGGTTTCTTAGACGTCAGGTGGCACTTTTCGGGGAAAtgtg                  <  1:1582128/101‑1 (MQ=255)

                                                                                     gCGGCCGCGAATTCTGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGATAATAATGGTTTCTTAGACGTCAGGTGGCACTTTTCGGGGAAAtgtg                  >  1:485246/1‑101 (MQ=255)

                                                                                      cGGCCGCGAATTCTGCCTCGTGATACGCCTATGTTTATAGGTTAATGTCATGATAATAATGGTTTCTTAGACGTCAGGTGGCACTTTTCGGGGAAATGTgc                 >  1:1311493/1‑101 (MQ=255)

                                                                                       gaccGCGAATTCTGCCTCGTGATACACATATAATTACAGGATAATGTCATGATAAAAATGGTTTCTTAGACGTCAGGTGGCACTTTTCGGGGAAATGTgct                <  1:1548156/99‑2 (MQ=255)

                                                                                        gCCGCGAATTCTGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGATAATAATGGTTTCTTAGACGTCAGGTGGCACTTTTCGGGGAAATGTgcgc               >  3:802606/1‑101 (MQ=255)

                                                                                         ccGCGAATTCTGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGATAATAATGGTTTCTTAGACGTCAGGTGGCACTTTTCGGGGAAATGTGcgcg              <  1:680152/101‑1 (MQ=255)

                                                                                         ccGCGAATTCTGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGATAATAATGGTTTCTTAGACGTCAGGTGGCACTTTTCGGGGAAATGTGcgcg              <  3:528436/101‑1 (MQ=255)

                                                                                          cgcgAATTCTGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGATAATAATGGTTTCTTAGACGTCAGGTGGCACTTTTCGGGGAAATGTGCGCgg             >  3:28787/1‑101 (MQ=255)

                                                                                          cgcgAATTCTGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGATAATAATGGTTTCTTAGACGTCAGGTGGCACTTTTCGGGGAAATGTGCGCgg             <  1:974679/101‑1 (MQ=255)

                                                                                           gcgAATTCTGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGATAATAATGGTTTCTTAGACGTCAGGTGGCACTTTTCGGGGAAATGTGCGCGGa            <  1:1170829/101‑1 (MQ=255)

                                                                                           gcgAATTCTGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGATAATAATGGTTTCTTAGACGTCAGGTGGCACTTTTCGGGGAAATGTGCGCGGa            <  1:841808/101‑1 (MQ=255)

                                                                                             gAATTCTGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGATAATAATGGTTTCTTAGACGTCAGGTGGCACTTTTCGGGGAAATGTGCGCGGAAc          <  1:1446089/101‑1 (MQ=255)

                                                                                                  cTGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGATAATAATGGTTTCTTAGACGTCAGGTGGCACTTTTCGGGGAAATGTGCGCGGAACCCCTa     <  3:898662/101‑1 (MQ=255)

TTTCCAGTCGGGAAACCTGTCGTGCCAGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGCTCTAGAAGCGGCCGCGAATTCTGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGATAATAATGGTTTCTTAGACGTCAGGTGGCACTTTTCGGGGAAATGTGCGCGGAACCCCTATTT  >  GFP_Plasmid_Sequ/879‑1080

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.