New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_007779	269765 =	NA (NA)	38 (0.820)	32/200	0.4	100%	coding (300/405 nt)	insN	partial regulator of insertion element IS911A
	?	NC_007779	= 370983	0 (0.000)					coding (536/882 nt)	mhpC	2‑hydroxy‑6‑ketonona‑2,4‑dienedioic acid hydrolase

ACAGAGGCTTTTTCCTCTGCTGTAAATGTTCGTCTCATTCAAAAAACCTCCGCAACCCCATGTTTTCACATAACTGTTGCGTTGACCAATTGAATCTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_007779/269864‑269765 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATCATCAGCTTCAGGTTTTCGATAGTCGGCTGACGATAAAGCTGATTCAGTCGCTTAATACCTTCGGTTGGCATCGGCGTAAACAAACTCATGCCG  <  NC_007779/370983‑370888                                                                                                                                                                                                      ACAGAGGCTTTTTCCTCTGCTGTAAATGTTCGTCTCATTCAAAAAACCTCCGCAACCCCATGTTTTCACATAACTGTTGCGTTGACCAATTGAATCTACAA                                                                                                 >  3:1444557/1‑101   AGAGGCTTTTTCCTCTGCTGTAAATGTTCGTCTCATTCAAAAAACCTCCGCAACCCCATGTTTTCACATAACTGTTGCGTTGACCAATTGAATCTACAATC                                                                                               >  3:989708/1‑101   AGAGGCTTTTTCCTCTGCTGTAAATGTTCGTCTCATTCAAAAAACCTCCGCAACCCCATGTTTTCACATAACTGTTGCGTTGACCAATTGAATCTACAATC                                                                                               <  3:1422287/101‑1   AGAGGCTTTTTCCTCTGCTGTAAATGTTCGTCTCATTCAAAAAACCTCCGCAACCCCATGTTTTCACATAACTGTTGCGTTGACCAATTGAATCTACAATC                                                                                               <  3:973956/101‑1            TTCCTCTGCTGTAAATGTTCGTCTCATTCAAAAAACCTCCGCAACCCCATGTTTTCACATAACTGTTGCGTTGACCAATTGAATCTACAATCATCAGCTTC                                                                                      <  1:660184/101‑1                TCTGCTGTAAATGTTCGTCTCATTCAAAAAACCTCCGCAACCCCATGTTTTCACATAACTGTTGCGTTGACCAATTGAATCTACAATCATCAGCTTCAGGT                                                                                  >  1:1490924/1‑101                 CTGCTGTAAATGTTCGTCTCATTCAAAAAACCTCCGCAACCCCATGTTTTCACATAACTGTTGCGTTGACCAATTGAATCTACAATCATCAGCTTCAGGTT                                                                                 >  3:1518323/1‑101                     TGTAAATGTTCGTCTCATTCAAAAAACCTCCGCAACCCCATGTTTTCACATAACTGTTGCGTTGACCAATTGAATCTACAATCATCAGCTTCAGGTTTTCG                                                                             >  3:738820/1‑101                       TAAATGTTCGTCTCATTCAAAAAACCTCCGCAACCCCATGTTTTCACATAACTGTTGCGTTGACCAATTGAATCTACAATCATCAGCTTCAGGTTTTCGAT                                                                           >  3:715871/1‑101                         AATGTTCGTCTCATTCAAAAAACCTCCGCAACCCCATGTTTTCACATAACTGTTGCGTTGGCCAATTGAATCTACAATCATCAGCTTCAGGTTTTCGATAG                                                                         <  1:1059111/101‑1                          ATGTTCGTCTCATTCAAAAAACCTCCGCAACCCCATGTTTTCACATAACTGTTGCGTTGACCAATTGAATCTACAATCATCAGCTTCAGGTTTTCGATAGT                                                                        >  1:1057382/1‑101                          ATGTTCGTCTCATTCAAAAAACCTCCGCAACCCCATGTTTTCACATAACTGTTGCGTTGACCAATTGAATCTACAATCATCAGCTTCAGGTTTTCGATAGT                                                                        >  1:1273504/1‑101                            GTTCGTCTCATTCAAAAAACCTCCGCAACCCCATGTTTTCACATAACTGTTGCGTTGACCAATTGAATCTACAATCATCAGCTTCAGGTTTTCGATAGTCG                                                                      >  1:842220/1‑101                               CGTCTCATTCAAAAAACCTCCGCAACCCCATGTTTTCACATAACTGTTGCGTTGACCAATTGAATCTACAATCATCAGCTTCAGGTTTTCGATAGTCGGCT                                                                   <  1:488801/101‑1                               CGTCTCATTCAAAAAACCTCCGCAACCCCATGTTTTCACATAACTGTTGCGTTGACCAATTGAATCTACAATCATCAGCTTCAGGTTTTCGATAGTCGGCT                                                                   >  3:1263424/1‑101                                         AAAAAACCTCCGCAACCCCATGTTTTCACATAACTGTTGCGTTGACCAATTGAATCTACAATCATCAGCTTCAGGTTTTCGATAGTCGGCTGACGATAAAG                                                         >  3:1507406/1‑101                                              ACCTCCGCAACCCCATGTTTTCACATAACTGTTGCGTTGACCAATTGAATCTACAATCATCAGCTTCAGGTTTTCGATAGTCGGCTGACGATAAAGCTGAT                                                    <  1:689727/101‑1                                                       ACCCCATGTTTTCACATAACTGTTGCGTTGACCAATTGAATCTACAATCATCAGCTTCAGGTTTTCGATAGTCGGCTGACGATAAAGCTGATTCAGTCGCT                                           <  3:1286085/101‑1                                                       ACCCCATGTTTTCACATAACTGTTGCGTTGACCAATTGAATCTACAATCATCAGCTTCAGGTTTTCGATAGTCGGCTGACGATAAAGCTGATTCAGTCGCT                                           <  1:1544752/101‑1                                                       ACCCCATGTTTTCACATAACTGTTGCGTTGACCAATTGAATCTACAATCATCAGCTTCAGGTTTTCGATAGTCGGCTGACGATAAAGCTGATTCAGTCGCT                                           <  3:1067317/101‑1                                                          CCATGTTTTCACATAACTGTTGCGTTGACCAATTGAATCTACAATCATCAGCTTCAGGTTTTCGATAGTCGGCTGACGATAAAGCTGATTCAGTCGCTTAA                                        <  3:772937/101‑1                                                           CATGTTTTCACATAACTGTTGCGTTGACCAATTGAATCTACAATCATCAGCTTCAGGTTTTAGATAGTCGGCTGACGATAAAGCTGATTCAGTCGCTTAAT                                       >  1:1027664/1‑101                                                               TTTTCACATAACTGTTGCGTTGACCAATTGAATCTACAATCATCAGCTTCAGGTTTTCGATAGTCGGCTGACGATAAAGCTGATTCAGTCGCTTAATACCT                                   >  1:357923/1‑101                                                                     CATAACTGTTGCGTTGACCAATTGAATCTACAATCATCAGCTTCAGGTTTTCGATAGTCGGCTGACGATAAAGCTGATTCAGTCGCTTAATACCTTCGGTT                             <  3:854341/101‑1                                                                        AACTGTTGCGTTGACCAATTGAATCTACAATCATCAGCTTCAGGTTTTCGATAGTCGGCTGACGATAAAGCTGATTCAGTCGCTTAATACCTTCGGTTGGC                          >  3:861384/1‑101                                                                          CTGTTGCGTTGACCAATTGAATCTACAATCATCAGCTTCAGGTTTTCGATAGTCGGCTGACGATAAAGCTGATTCAGTCGCTTAATACCTTCGGTTGGCAT                        >  1:840671/1‑101                                                                          CTGTTGCGTTGACCAATTGAATCTACAATCATCAGCTTCAGGTTTTCGATAGTCGGCTGACGATAAAGCTGATTCAGTCGCTTAATACCTTCGGTTGGCAT                        >  1:650484/1‑101                                                                          CTGTTGCGTTGACCAATTGAATCTACAATCATCAGCTTCAGGTTTTCGATAGTCGGCTGACGATAAAGCTGATTCAGTCGCTTAATACCTTCGGTTGGCAT                        <  1:341966/101‑1                                                                           TGTTGCGTTGACCAATTGAATCTACAATCATCAGCTTCAGGTTTTCGATAGTCGGCTGACGATAAAGCTGATTCAGTCGCTTAATACCTTCGGTTGGCATC                       >  3:939268/1‑101                                                                              TGCGTTGACCAATTGAATCTACAATCATCAGCTTCAGGTTTTCGATAGTCGGCTGACGATAAAGCTGATTCAGTCGCTTAATACCTTCGGTTGGCATCGGC                    <  1:287768/101‑1                                                                               GCGTTGACCAATTGAATCTACAATCATCAGCTTCAGGTTTTCGATAGTCGGCTGACGATAAAGCTGATTCAGTCGCTTAATACCTTCGGTTGGCATCGGCG                   >  3:8979/1‑101                                                                                  TTGACCAATTGAATCTACAATCATCAGCTTCAGGTTTTCGATAGTCGGCTGACGATAAAGCTGATTCAGTCGCTTAATACCTTCGGTTGGCATCGGCGTAA                <  3:1574212/101‑1                                                                                    GACCAATTGAATCTACAATCATCAGCTTCAGGTTTTCGATAGTCGGCTGACGATAAAGCTGATTCAGTCGCTTAATACCTTCGGTTGGCATCGGCGTAAAC              >  1:431793/1‑101                                                                                     ACCAATTGAATCTACAATCATCAGCTTCAGGTTTTCGATAGTCGGCTGACGATAAAGCTGATTCAGTCGCTTAATACCTTCGGTTGGCATCGGCGTAAACA             <  1:164139/101‑1                                                                                      CCAATTGAATCTACAATCATCAGCTTCAGGTTTTCGATAGTCGGCTGACGATAAAGCTGATTCAGTCGCTTAATACCTTCGGTTGGCATCGGCGTAAACAA            <  1:1502854/101‑1                                                                                       CAATTGAATCTACAATCATCAGCTTCAGGTTTTCGATAGTCGGCTGACGATAAAGCTGATTCAGTCGCTTAATACCTTCGGTTGGCATCGGCGTAAACAAA           >  1:7567/1‑101                                                                                              ATCTACAATCATCAGCTTCAGGTTTTCGATAGTCGGCTGACGATAAAGCTGATTCAGTCGCTTAATACCTTCGGTTGGCATCGGCGTAAACAAACTCATGC    >  3:419946/1‑101                                                                                                CTACAATCATCAGCTTCAGGTTTTCGATAGTCGGCTGACGATAAAGCTGATTCAGTCGCTTAATACCTTCGGTTGGCATCGGCGTAAACAAACTCATGCCG  >  1:630255/1‑101                                                                                                                                                                                                      ACAGAGGCTTTTTCCTCTGCTGTAAATGTTCGTCTCATTCAAAAAACCTCCGCAACCCCATGTTTTCACATAACTGTTGCGTTGACCAATTGAATCTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_007779/269864‑269765 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATCATCAGCTTCAGGTTTTCGATAGTCGGCTGACGATAAAGCTGATTCAGTCGCTTAATACCTTCGGTTGGCATCGGCGTAAACAAACTCATGCCG  <  NC_007779/370983‑370888

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.