Barrick Lab :: Reference Information

Getting Started in Lab

• SELECT793FROMPG_SLEEP(15))--;nowysiwyg=0" rel="nofollow" title="Getting Started with Lab Techniques (this topic does not yet exist; you can create it)">Getting Started with Lab Techniques
• SELECT793FROMPG_SLEEP(15))--;nowysiwyg=0" rel="nofollow" title="Synthetic Biology 101 (this topic does not yet exist; you can create it)">Synthetic Biology 101
  Background on what synthetic biology is and how to get started in the field.
• SELECT793FROMPG_SLEEP(15))--;nowysiwyg=0" rel="nofollow" title="Resources to Learn Biocomputing (this topic does not yet exist; you can create it)">Resources to Learn Biocomputing
  Resources for learning the command line, R, Python, GitHub, etc.

Templates and Spreadsheets

• SELECT793FROMPG_SLEEP(15))--;nowysiwyg=0" rel="nofollow" title="Circular and Rectangular Tube Labels (this topic does not yet exist; you can create it)">Circular and Rectangular Tube Labels
  Templates for printing cryotube labels.
• SELECT793FROMPG_SLEEP(15))--;nowysiwyg=0" rel="nofollow" title="Petri Dish Patch Templates (this topic does not yet exist; you can create it)">Petri Dish Patch Templates
  Grids that can be used to divide up petri dishes.

Writing

• SELECT793FROMPG_SLEEP(15))--;nowysiwyg=0" rel="nofollow" title="Barrick Lab Style Guide (this topic does not yet exist; you can create it)">Barrick Lab Style Guide
  How to format manuscript files.
• Unicode Tables
  Complete catalog of symbols that can be used in manuscripts.
• SELECT793FROMPG_SLEEP(15))--;nowysiwyg=0" rel="nofollow" title="Subtle Grammatical Usage Rules (this topic does not yet exist; you can create it)">Subtle Grammatical Usage Rules
  Common grammatical mistakes and confused words.
• SELECT793FROMPG_SLEEP(15))--;nowysiwyg=0" rel="nofollow" title="Accessing Journal Articles (this topic does not yet exist; you can create it)">Accessing Journal Articles
  Methods for finding, discovering, and accessing various journal articles, including when off-campus.
• SELECT793FROMPG_SLEEP(15))--;nowysiwyg=0" rel="nofollow" title="Publicly Archive Data (this topic does not yet exist; you can create it)">Publicly Archive Data
  Uploading data and obtaining an accession number from GenBank, SRA, Zenodo, and Dryad repositories.
• How to write a response to reviewers (Rich Lenski)

Presenting

• SELECT793FROMPG_SLEEP(15))--;nowysiwyg=0" rel="nofollow" title="How to Graph Data (this topic does not yet exist; you can create it)">How to Graph Data
  Preferred conventions for presenting data of different kinds.
• SELECT793FROMPG_SLEEP(15))--;nowysiwyg=0" rel="nofollow" title="Presentation Advice (this topic does not yet exist; you can create it)">Presentation Advice
  Advice on how to present your research in different venues.

Experimental Design and Statistics

• SELECT793FROMPG_SLEEP(15))--;nowysiwyg=0" rel="nofollow" title="Introduction to Experimental Design (this topic does not yet exist; you can create it)">Introduction to Experimental Design
  How to design effective experiments.

Bacteria

• E. coli Genotypes (OWW)
  Common genotypes, genetic markers, and alleles.
• Acinetobacter baylyi ADP1 Genome Resources: BLAST | BioCyc | tdk/kanR sequence
  
• SELECT793FROMPG_SLEEP(15))--;nowysiwyg=0" rel="nofollow" title="Characteristics of the E. coli Genome (this topic does not yet exist; you can create it)">Characteristics of the E. coli Genome
• SELECT793FROMPG_SLEEP(15))--;nowysiwyg=0" rel="nofollow" title="Commonly Used Plasmids (this topic does not yet exist; you can create it)">Commonly Used Plasmids
• SELECT793FROMPG_SLEEP(15))--;nowysiwyg=0" rel="nofollow" title="Bacterial Genetic Code (this topic does not yet exist; you can create it)">Bacterial Genetic Code
  Translation table and codon nomenclature.

Computation

General Setup and Getting Started Guides

• SELECT793FROMPG_SLEEP(15))--;nowysiwyg=0" rel="nofollow" title="Computer Setup (this topic does not yet exist; you can create it)">Computer Setup
  How to get your computer ready for bioinformatics and computational biology.
• SELECT793FROMPG_SLEEP(15))--;nowysiwyg=0" rel="nofollow" title="Computing Environment Setup (this topic does not yet exist; you can create it)">Computing Environment Setup
  Advice for setting up your Linux/Unix environment for bioinformatics and computational biology.
• SELECT793FROMPG_SLEEP(15))--;nowysiwyg=0" rel="nofollow" title="Learn Biocomputing (this topic does not yet exist; you can create it)">Learn Biocomputing
  Resources for learning the command line, R, Python, GitHub, etc.
• SELECT793FROMPG_SLEEP(15))--;nowysiwyg=0" rel="nofollow" title="Bioinformatics Master List (this topic does not yet exist; you can create it)">Bioinformatics Master List
  A master list of bioinformatics software frequently used in the lab

Specific Topics/Workflows

• SELECT793FROMPG_SLEEP(15))--;nowysiwyg=0" rel="nofollow" title="Unix Commands Quick Reference (this topic does not yet exist; you can create it)">Unix Commands Quick Reference
  Collection of useful Unix commands.
• SELECT793FROMPG_SLEEP(15))--;nowysiwyg=0" rel="nofollow" title="SSH Public Key Authentication (this topic does not yet exist; you can create it)">SSH Public Key Authentication
  How to set up login without typing password between Linux machines.
• SELECT793FROMPG_SLEEP(15))--;nowysiwyg=0" rel="nofollow" title="Command Line File Transfer to UT Box (this topic does not yet exist; you can create it)">Command Line File Transfer to UT Box
  How to directly transfer files to/from TACC or other computers to UT Box using LFTP.
• SELECT793FROMPG_SLEEP(15))--;nowysiwyg=0" rel="nofollow" title="Useful Python snippets for biology (this topic does not yet exist; you can create it)">Useful Python snippets for biology
  Short code blocks for performing common tasks in Python

User Guides and Manuals

• TACC – Resources at the Texas Advanced Computing Center.
  • Lonestar6 - high performance cluster user guide
• SELECT793FROMPG_SLEEP(15))--;nowysiwyg=0" rel="nofollow" title="Genome Sequencing (this topic does not yet exist; you can create it)">Genome Sequencing

Deprecated

• SELECT793FROMPG_SLEEP(15))--;nowysiwyg=0" rel="nofollow" title="Retired Computation Pages (this topic does not yet exist; you can create it)">Retired Computation Pages
  Older topics that are likely out of date!

Miscellaneous and Humor

• SELECT793FROMPG_SLEEP(15))--;nowysiwyg=0" rel="nofollow" title="Link List (this topic does not yet exist; you can create it)"> Link List
  Miscellaneous links of interest.
• SELECT793FROMPG_SLEEP(15))--;nowysiwyg=0" rel="nofollow" title="Science Quotations (this topic does not yet exist; you can create it)">Science Quotations
  Memorable and humorous sayings related to our research.