Barrick Lab :: Computational Protocols

Command line

• Unix Commands Quick Reference
  Collection of useful Unix commands.
• SSH Public Key Authentication
  How to set up login without typing password between Linux machines.

Next generation sequencing data analysis

• Flexbar Commands for Trimming Adapter Sequences
  Command line tools for trimming adapter sequence from NGS reads.
• Running breseq on TACC
• Analyzing RNA-Seq data
  Analyzing RNA-Seq data for differential expression.

Data Management

• Publicly Archiving Data
  Uploading data and obtaining an accession number from GenBank, SRA, and Dryad databases.