New junction evidence
  seq id position reads (cov) reads (cov) score skew annotation gene product
* ? REL606 588495 =NA (NA)35 (0.680) 24/66 0.8 noncoding (1/1977 nt) IS150 repeat region
?REL606 1270660 = 0 (0.000)intergenic (‑167/+238) ldrC/chaA toxic polypeptide, small/calcium/sodium:proton antiporter

AGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTC  >  REL606/1270629‑1270695
                               |                                   
tttcatcgtccaacaaaatgggtgcagtacaCCGGa                                 >  1:5972430‑M2/32‑36 (MQ=255)
    atcgtccaacaaaatgggtgcagtacaCCGGATAAt                             >  1:1225376‑M2/28‑36 (MQ=255)
    atcgtccaacaaaatgggtgcagtacaCCGGATAAt                             <  1:3138862‑M2/9‑1 (MQ=255)
     tcgtccaacaaaatgggtgcagtacaCCGGGTAAtt                            >  1:6610910‑M2/27‑36 (MQ=255)
      cgtccaacaaaatgggtgcagtacaCCGGATAATTc                           <  1:6381328‑M2/11‑1 (MQ=255)
       gtccaacaaaatgggtgcagtacaCCGGATAATTcc                          <  1:527493‑M2/12‑1 (MQ=255)
       gtccaacaaaatgggtgcagtacaCCGGATAATTcc                          >  1:5769420‑M2/25‑36 (MQ=255)
        tccaacaaaatgggtgcagtacaCCGGATAATTCCg                         <  1:2397933‑M2/13‑1 (MQ=255)
        tccaacaaaatgggtgcagtacaCCGGATAATTCCg                         >  1:7079898‑M2/24‑36 (MQ=255)
        tccaacaaaatgggtgcagtacaCCGGATAATTCCg                         <  1:333542‑M2/13‑1 (MQ=255)
          caacaaaatgggtgcagtacaCCGGATAATTCCGGc                       >  1:2717495‑M2/22‑36 (MQ=255)
           aacaaaatgggtgcagtacaCCGGATAATTCCGGCt                      >  1:1864671‑M2/21‑36 (MQ=255)
            acaaaatgggtgcagtacaCCGGATAATTTCGGCtt                     >  1:737801‑M2/20‑36 (MQ=255)
              aaaatgggtgcagtacaCCGGATAATTCCGGCTTgg                   >  1:6357334‑M2/18‑36 (MQ=255)
               aaatgggtgcagtacaCCGGATAATTCCGGCTTGgt                  <  1:3433597‑M2/20‑1 (MQ=255)
               aaatgggtgcagtacaCCGGATAATTCCGGCTTGgt                  <  1:344623‑M2/20‑1 (MQ=255)
               aaatgggtgcagtacaCCGGATAATTCCGGCTTGgt                  >  1:3904869‑M2/17‑36 (MQ=255)
               aaatgggtgcagtacaCCGGATAATTCCGGCTTGgt                  <  1:4343978‑M2/20‑1 (MQ=255)
               aaatgggtgcagtacaCCGGATAATTCCGGCTTGgt                  >  1:5028562‑M2/17‑36 (MQ=255)
                aatgggtgcagtacaCCGGATAATTCCGGCTTGgtg                 >  1:4770633‑M2/16‑36 (MQ=255)
                aatgggtgcagtacaCCGGATAATTCCGGCTTGgtg                 >  1:915287‑M2/16‑36 (MQ=255)
                 atgggtgcagtacaCCGGATAATTCCGGCTtggtct                >  1:102094‑M2/15‑34 (MQ=255)
                 atgggtgcagtacaCCGGATAATTCCGGCTTGgtgt                <  1:231710‑M2/22‑1 (MQ=255)
                   gggtgcggtacaCCGGATAATTCCGGCTTGGTGTgg              <  1:990305‑M2/24‑1 (MQ=255)
                   gggtgcagtacaCCGGATGATTCCGGCTTGGTGTgg              <  1:1159401‑M2/24‑1 (MQ=255)
                    ggtgcagtacaCCGGATAATTCCGGCTTGGTGTGGa             <  1:6523826‑M2/25‑1 (MQ=255)
                      tgcagtacaCCGGATAATTCCGGCTTGGTGTGGAta           >  1:4316707‑M2/10‑36 (MQ=255)
                        cagtacaCCGGATAATTCCGGCTTGGTGTggatttt         >  1:2926234‑M2/8‑33 (MQ=255)
                        cagtacaCCGGATAATTCCGGCTTGGTGTGgataat         >  1:771532‑M2/8‑34 (MQ=255)
                        cagtacaCCGGATAATTCCGGCTTGGTGTGGAtact         >  1:5032847‑M2/8‑36 (MQ=255)
                        cagtacaCCGGATAATTCCGGCTTGGTGTGGAtact         <  1:2773503‑M2/29‑1 (MQ=255)
                         agtacaCCGGATAATTCCGGCTTGGTGTGgatacat        >  1:1828566‑M2/7‑34 (MQ=255)
                         agtacaCCGGATAATTCCGGCTTGGTGTGGAtacta        >  1:7282557‑M2/7‑36 (MQ=255)
                          gtacaCCGGATAATTCCGGCTTGGTGTGGataatat       >  1:5422376‑M2/6‑35 (MQ=255)
                            acaCCGGATAATTCCGGCTTGGTGTGGATACTACtt     <  1:3267286‑M2/33‑1 (MQ=255)
                             caCCGGATAATTCCGGCTTGGTGTGGATACTActtt    >  1:7489939‑M2/3‑35 (MQ=255)
                               ccGGATAATTCCGGCTTGGTGTGGATACTACTtctc  <  1:736689/36‑1 (MQ=38)
                               |                                   
AGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTC  >  REL606/1270629‑1270695

Base quality scores:  ATCG  < 3 ≤  ATCG  < 12 ≤  ATCG  < 22 ≤  ATCG  < 30 ≤  ATCG  < 32 ≤  ATCG