Predicted mutation
evidence seq id position mutation annotation gene description
JC JC REL606 1,821,525 IS150 (–) +3 bp coding (573‑575/1041 nt) ynjI predicted inner membrane protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew annotation gene product
* ? REL606 = 590471NA (NA)45 (0.900) 27/64 0.5 noncoding (1977/1977 nt) IS150 repeat region
?REL606 = 1821527 65 (1.190)coding (573/1041 nt) ynjI predicted inner membrane protein
* ? REL606 1821525 =50 (1.000)55 (1.100) 39/64 0.0 coding (575/1041 nt) ynjI predicted inner membrane protein
?REL606 3651091 = NA (NA)noncoding (1/1443 nt) IS150 repeat region

Only 100 of 117 total aligned reads displayed.

CTTCCTCCATGTTTGCTTTAAAGGTATTGGCTCCATGGTCGCCAGAAAGAAAATGCTCCATTAAGGCACAA  >  REL606/1821490‑1821560
                                   |                                   
tccatttcatcgtccaacaaaatgggtgccgtacat                                     <  1:1679255‑M1/1‑1 (MQ=255)
tccatttcatcgtccaacaaaatgggtgcagtacat                                     <  1:190257‑M1/1‑1 (MQ=255)
tccatttcatcgtccaacaaaatgggtgcagtacat                                     >  1:3828205‑M1/36‑36 (MQ=255)
cTTCCTCCATGTTTGCTTTAAAGGTATTGGCTCCAt                                     >  1:2400474/1‑36 (MQ=255)
 tttctccATGTTTGCTTTAAAGGTATTGGCCCCATg                                    <  1:2603722/33‑1 (MQ=25)
 ccatttcatcgtccaacaaaatgggtgcagtacaTg                                    <  1:122046‑M1/2‑1 (MQ=255)
 ccatttcatcgtccaacaaaatgggtgcagtacaTg                                    >  1:1726018‑M1/35‑36 (MQ=255)
  tcctccATGTTTGCTTTAAAGGTATTGGCTCCATGG                                   >  1:5146123‑M2/1‑36 (MQ=255)
   cctccATGTTTGCTTTAAAGGTATTGGCTCCATGGt                                  <  1:1989677‑M2/36‑2 (MQ=255)
   cctccATGTTTGCTTTAAAGGTATTGGCTCCATGGt                                  <  1:2803284‑M2/36‑2 (MQ=255)
   atttcatcgtccaacaaaatgggtgcagtacaTGGt                                  <  1:2647767‑M1/4‑1 (MQ=255)
   atttcatcgtccaacaaaatgggtgcagtacaTGGt                                  <  1:2314910‑M1/4‑1 (MQ=255)
    tttcatcgtccaacaaactgggtgcagtacaTGGTc                                 <  1:699940‑M1/5‑1 (MQ=255)
    tttcatcgtccaacaaaatgggtgcagtacaTGGTc                                 >  1:5845614‑M1/32‑36 (MQ=255)
    tttcatcgtccaacaaaatgggtgcagtacaTGGTc                                 >  1:5477106‑M1/32‑36 (MQ=255)
    ctccATGTTTGCTTTAAAGGTATTGGCTCCACGGtg                                 <  1:2044674‑M2/36‑3 (MQ=255)
     ttcatcgtccaacaaaatgggtgcagtacaTGGTCg                                <  1:6974610‑M1/6‑1 (MQ=255)
      tcatcgtccaacaaaatgggtgcagtacaTGgtcac                               <  1:2925509‑M1/7‑3 (MQ=255)
      tcatcgtccaacaaaatgggtgcagtacaTGGTCGc                               <  1:5621836‑M1/7‑1 (MQ=255)
      ccATGTTTGCTTTAAAGGTATTGGCTCCATGGtgtg                               >  1:5373176‑M2/1‑32 (MQ=255)
       catcgtccaacaaaatgggtgcagtacaTGGTCGcc                              >  1:231739‑M1/29‑36 (MQ=255)
       cATGTTTGCTTTAAAGGTATTGGCTCCATGGtgtag                              <  1:6892283‑M2/36‑6 (MQ=255)
       cATGTTTGCTTTAAAGGTATTGGCTCCATGGtgtac                              <  1:6011376‑M2/36‑6 (MQ=255)
       cATGTTTGCTTTAAAGGTATTGGCTCCATGGtgtac                              <  1:7331082‑M2/36‑6 (MQ=255)
        atcgtccaacaaaatgggtgcagtacaTGGTCGCCa                             <  1:5299728‑M1/9‑1 (MQ=255)
        atcgtccaacaaaatgggtgcagtacaTGGTCGCCa                             >  1:5679395‑M1/28‑36 (MQ=255)
        aTGTTTGCTTTAAAGGTATTGGCTCCATGGtgtact                             >  1:7130975‑M2/1‑30 (MQ=255)
         tcgtccaacaaaatgggtgcagtacaTGGTCGCCag                            >  1:2388242‑M1/27‑36 (MQ=255)
          gTTTGCTTTAAAGGTATTGGCTCCATGGtgtactga                           >  1:1699419‑M2/1‑28 (MQ=255)
          cgtccaacaaaatgggtgcagtacaTGGTCGCCaga                           >  1:4487025‑M1/26‑36 (MQ=255)
           tttGCTTTAAAGGTATTGGCTCCATGGtgtactgtc                          <  1:532498‑M2/36‑10 (MQ=255)
           tttGCTTTAAAGGTATTGGCTCCATGGtgtactgac                          >  1:1482684‑M2/1‑27 (MQ=255)
           tttGCTATAAAGGTATTGGCTCCATGGtgtactgac                          >  1:1853033‑M2/1‑27 (MQ=255)
           gtccaacaaaatgggtgcagtacaTGGTCGCCagaa                          >  1:3157173‑M1/25‑36 (MQ=255)
            ttGCTTTAAAGGTATTGGCTCCATGGtgtactgacc                         >  1:1517462‑M2/1‑26 (MQ=255)
            ttGCTTTAAAGGTATTGGCTCCATGGtgtactgacc                         <  1:6333574‑M2/36‑11 (MQ=255)
            ttGCTTTAAAGGTATTGGCTCCATGGtgtactgacc                         >  1:224650‑M2/1‑26 (MQ=255)
            ttGCTTTAAAGGTATTGGCTCCATGGtgtactgacc                         <  1:2061092‑M2/36‑11 (MQ=255)
            ttGCTTTAAAGGTATTGGCTCCATGGtgtactgacc                         >  1:2590613‑M2/1‑26 (MQ=255)
              caacaaaatgggtgcagtacaTGGTCGCCagaaaga                       >  1:7178314‑M1/22‑36 (MQ=255)
               aacaaaatgggtgcagtacaTGGTCGCCagaaagaa                      <  1:1771366‑M1/16‑1 (MQ=255)
               aacaaaatgggtgcagtacaTGGTCGCCagaaagaa                      >  1:4194055‑M1/21‑36 (MQ=255)
                 ttATAGGTATTGGCTCCATGGtgtactgaccccaaa                    >  1:4874782‑M2/1‑21 (MQ=255)
                 caaaatgggtgcagtacaTGGTCGCCAGAAAGaaaa                    <  1:5438125‑M1/18‑1 (MQ=255)
                 caaaatgggtgcagtacaTGGTCGCCAGAAAGaaaa                    <  1:4378964‑M1/18‑1 (MQ=255)
                  tAAAGGTATTGGCTCCATGGtgtactgaccccaaaa                   <  1:4884288‑M2/36‑17 (MQ=255)
                  tAAAGGTATTGGCTCCATGGtgtactgaccccaaaa                   <  1:3192482‑M2/36‑17 (MQ=255)
                  aaaatgggtgcagtacaTGGTCGCCAGAAAGAAAAt                   >  1:4602106‑M1/18‑36 (MQ=255)
                  aaaatgggtgcagtacaTGGTCGCCAGAAAGAAAAt                   >  1:7200548‑M1/18‑36 (MQ=255)
                  aaaatgggtgcagtacaTGGTCGCCAGAAAGAAAAt                   <  1:6994959‑M1/19‑1 (MQ=255)
                   aaatgggtgcagtacaTGGTCGCCAGAAAGAAAATg                  <  1:7106863‑M1/20‑1 (MQ=255)
                   aaatgggtgcagtacaTGGTCGCCAGAAAGAAAATg                  >  1:5004768‑M1/17‑36 (MQ=255)
                   aaaGGTATTGGCTCCATGGtgtactgaccccataaa                  <  1:3773543‑M2/36‑18 (MQ=255)
                   aaaGGTATTGGCTCCATGGtgtactgaccccaaaaa                  <  1:5878803‑M2/36‑18 (MQ=255)
                    aatgggtgcagtacaTGGTCGCCAGAAAGAAAATGc                 <  1:1153850‑M1/21‑1 (MQ=255)
                    aaGGTATTGGCTCCATGGcgtactgaccccaaaaag                 <  1:6180421‑M2/36‑19 (MQ=255)
                     atgggtgcagtacaTGGTCGCCAGAAAGAAAATGCt                <  1:3381572‑M1/22‑1 (MQ=255)
                     atgggtgcagtacaTGGTCGCCAGAAAGAAAATGCt                >  1:1068183‑M1/15‑36 (MQ=255)
                     aGGTATTGGCTCCATGGtgtactgaccccaaaaagt                <  1:3501010‑M2/36‑20 (MQ=255)
                      tgggtgcagtacaTGGTCGCCAGAAAGAAAATGCTc               <  1:509459‑M1/23‑1 (MQ=255)
                      tgggtgcagtacaTGGTCGCCAGAAAGAAAATGCTc               <  1:6042750‑M1/23‑1 (MQ=255)
                      ggTATTGGCTCCATGGtgtactgaccccaaaaagtt               <  1:1143090‑M2/36‑21 (MQ=255)
                       gggtgcagtacaTGGTCGCCAGAAAGAAAATGCTcc              >  1:3085215‑M1/13‑36 (MQ=255)
                       gggtgcagtacaTGGTCGCCAGAAAGAAAATGCTcc              <  1:1211114‑M1/24‑1 (MQ=255)
                       gTATTGGCTCCATGGtgtactgaccccaaaaagttg              >  1:1596581‑M2/1‑15 (MQ=255)
                       gTATTGGCTCCATGGtgtactgaccccaaaaagttg              >  1:537083‑M2/1‑15 (MQ=255)
                       gTATTGGCTCCATGGtgtactgaccccaaaaagttg              >  1:7310376‑M2/1‑15 (MQ=255)
                        tATTGGCTCCATGGtgtactgaccccaaaaagttgg             <  1:5058929‑M2/36‑23 (MQ=255)
                        tATTGGCTCCATGGtgtactgaccccaaaaagttgg             <  1:3520693‑M2/36‑23 (MQ=255)
                          ttGGCTCCATGGtgtactgaccccaaaaagttggac           >  1:3589120‑M2/1‑12 (MQ=255)
                          tgcagtacaTGGTCGCCAGAAAGAAAATGCTCCAtt           <  1:7394248‑M1/27‑1 (MQ=255)
                           gcagtacaTGGTCGCCAGAAAGAAAATGCTCCATTa          >  1:5367923‑M1/9‑36 (MQ=255)
                           gcagtacaTGGTCGCCAGAAAGAAAATGCTCCATTa          >  1:621987‑M1/9‑36 (MQ=255)
                           gcagtacaTGGTCGCCAGAAAGAAAATGCTCCATTa          <  1:6682829‑M1/28‑1 (MQ=255)
                            ggCTCCATGGtgtactgaccccaaaaagttggacag         <  1:4673563‑M2/36‑27 (MQ=255)
                            cagtacaTGGTCGCCAGAAAGAAAATGCTCCATTaa         >  1:7349168‑M1/8‑36 (MQ=255)
                             gCTCCATGGtgtactgaccccaaaaagttggacagt        <  1:680187‑M2/36‑28 (MQ=255)
                             agtacaTGGTCGCCAGAAAGAAAATGCTCCATTAAg        >  1:7369400‑M1/7‑36 (MQ=255)
                              gtacaTGGTCGCCAGAAAGAAAATGCTCCATTAAgg       <  1:719203‑M1/31‑1 (MQ=255)
                               tacaTGGTCGCCAGAAAGAAAATGCTCCATTAAGGc      <  1:6090007‑M1/32‑1 (MQ=255)
                               tacaTGGTCGCCAGAAAGAAAATGCTCCATTAAGGc      <  1:5149410‑M1/32‑1 (MQ=255)
                               tacaTGGTCGCCAGAAAGAAAATGCTCCATTAAGGc      <  1:2460269‑M1/32‑1 (MQ=255)
                                ccATGGtgtactgaccccaaaaagttggatagttaa     <  1:6444460‑M2/36‑31 (MQ=255)
                                ccATGGtgtactgaccccaaaaagttggacagttaa     <  1:3896494‑M2/36‑31 (MQ=255)
                                ccATGGtgtactgaccccaaaaagttggacagttaa     >  1:4763490‑M2/1‑6 (MQ=255)
                                acaTGGTCGCCAGAAAGAAAATGCTCCATTAAGGca     >  1:7210678‑M1/4‑36 (MQ=255)
                                acaTGGTCGCCAGAAAGAAAATGCTCCATTAAGGca     <  1:6184830‑M1/33‑1 (MQ=255)
                                acaTGGTCGCCAGAAAGAAAATGCTCCATTAAGGca     <  1:4123408‑M1/33‑1 (MQ=255)
                                 caTGGTCGCCAGAAAGAAAATGCTCCATTTAGGcac    <  1:4435672‑M1/34‑1 (MQ=255)
                                 caTGGTCGCCAGAAAGAAAATGCTCCATTAAGGcac    >  1:2034114‑M1/3‑36 (MQ=255)
                                 caTGGTCGCCAGAAAGAAAATGCTCCATTAAGGcac    <  1:3223866‑M1/34‑1 (MQ=255)
                                 cATTGtgtactgaccccaaaaagttggacagttaaa    <  1:3902506‑M2/36‑32 (MQ=255)
                                  aTGGtgtactgaccccaaaaagttggacagttaaac   >  1:1745304‑M2/1‑4 (MQ=255)
                                  aTGGtgtactgaccccaaaaagttggacagttaaac   <  1:6335118‑M2/36‑33 (MQ=255)
                                  aTGGtgtactgaccccaaaaagttggacagttaaac   >  1:1293603‑M2/1‑4 (MQ=255)
                                  aTGGtgtactgaccccaaaaagttggacagttaaac   >  1:478875‑M2/1‑4 (MQ=255)
                                  aTGGTCGCCAGAAAGAAACTGCCCCATTACGGcaca   >  1:1698422/1‑36 (MQ=21)
                                  aTGGTCGCCAGAAAGAAAATGCTCCATTAAGGcaca   >  1:5417049‑M1/2‑36 (MQ=255)
                                   tGGtgtactgaccccaaaaagttggacagttaaaca  >  1:5528033‑M2/1‑3 (MQ=255)
                                   TGGTCGCCAGAAAGAAAATGCTCCATTAAGGCACaa  >  1:4111760‑M1/1‑36 (MQ=255)
                                   |                                   
CTTCCTCCATGTTTGCTTTAAAGGTATTGGCTCCATGGTCGCCAGAAAGAAAATGCTCCATTAAGGCACAA  >  REL606/1821490‑1821560

Base quality scores:  ATCG  < 3 ≤  ATCG  < 12 ≤  ATCG  < 22 ≤  ATCG  < 30 ≤  ATCG  < 32 ≤  ATCG