New junction evidence
  seq id position reads (cov) reads (cov) score skew annotation gene product
* ? REL606 588495 =NA (NA)35 (0.680) 24/66 0.8 noncoding (1/1977 nt) IS150 repeat region
?REL606 1270660 = 0 (0.000)intergenic (‑167/+238) ldrC/chaA toxic polypeptide, small/calcium/sodium:proton antiporter

GAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGG  >  REL606/588460‑588528
                                   |                                 
naGTCNTGCAGAAAAAAACTGGTTCAGCTTCAAGtt                                   <  1:6616086/35‑1 (MQ=37)
gAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAGtt                                   <  1:7368217/36‑1 (MQ=255)
 aGTCATGCAGAAAAAAACGGGTTCAGCTTCAAGTTg                                  <  1:3012369/36‑1 (MQ=255)
  gTCATGCAGAAAAAAAAGGGTTCAGCTTCAAGttat                                 >  1:1734632/1‑34 (MQ=25)
     aTGCAGAAAAAAACGGGTTCAGCTTCAAGTTGTACt                              >  1:1346451/1‑36 (MQ=255)
     aTGCAGAAAAAAACGGGTTCAGCTTCAAGTTGTACt                              >  1:4554905/1‑36 (MQ=255)
     aTGCAGAAAAAAACGGGTTCAGCTTCAAGTTGTACt                              >  1:3134279/1‑36 (MQ=255)
       gCAGAAAAAAACGGGTTCAGCTTCAAGTTGTACTGc                            >  1:6665294/1‑36 (MQ=255)
        cAGAAAAAAACGGGTTCAGCTTCAAGTTGTACTGCa                           >  1:5511536/1‑36 (MQ=255)
        cAGAAAAAAACGGGTACAGCTTCAAGTTGTACTGCa                           <  1:7124015/36‑1 (MQ=255)
         aGAAAAAAACGGGTTCAGCTTCAAGTTGTACTGCAc                          >  1:4017668/1‑36 (MQ=255)
         aGAAAAAAACGGGTTCAGCTTCAAGTTGTACTGCAc                          >  1:3122913/1‑36 (MQ=255)
         aGAAAAAAACGGGTTCAGCTCCAAGTTGCACTGCAc                          >  1:7129018/1‑36 (MQ=25)
          gAAAAAAACGGGTTCAGCTTCAAGTTGTACTGCAcc                         <  1:2710634/36‑1 (MQ=255)
          gAAAAAAACGGGTTCAGCTTCAAGTTGTACTGCAcc                         >  1:7073761/1‑36 (MQ=255)
             aaaaaCGGGTTCAGCTTCAAGTTGTACTGCACCCAt                      <  1:2233692/36‑1 (MQ=255)
              aaaaCGGGTTCAGCTTCAAGTTGTACTGCACCCAtt                     <  1:4062663/36‑1 (MQ=255)
               aaaCGGGTTCTGCTTCAAGTTGTACTGCACCCAttt                    <  1:1397422/36‑1 (MQ=255)
               aaaCGGGTTCAGCTTCAAGTTGTACTGCACCCAttt                    >  1:6027390/1‑36 (MQ=255)
               aaaCGGGTTCAGCTTCAAGTTGTACTGCACCCAttt                    >  1:1102402/1‑36 (MQ=255)
               aaaCGGGGTCAGCTTCAAGTTGTACTGCACCCAttt                    <  1:6634676/36‑1 (MQ=255)
                aaCGGGTTCAGCTTCTAGTTGTACTGCACCCAtttt                   <  1:3549869/36‑1 (MQ=255)
                aaCGGGTTCAGCTTCAAGTTGTACTGCACCCAtttt                   >  1:6671366/1‑36 (MQ=255)
                aaCGGGTTCAGCTTCAAGTTGTACTGCACCCAtttt                   >  1:2431022/1‑36 (MQ=255)
                  cGGGTTCAGCTTCAAGTTGTACTGCACCCATTttgt                 <  1:7062412/36‑1 (MQ=255)
                  cGGGTGCAGCTTCAAGTTGTACTGCACCCATTttgt                 <  1:4219913/36‑1 (MQ=255)
                   gggTTCAGCTTCAAGTTGTACTGCACCCATTttgtt                <  1:5633655/36‑1 (MQ=255)
                     gTTCAGCTTCAAGTTGTACTGCACCCATTTTGTTgg              >  1:7125781/1‑36 (MQ=255)
                     gTTCAGCTTCAAGTTGTACTGCACCCATTTTGTTgg              <  1:4743052/36‑1 (MQ=255)
                     gTTCAGCTTCAAGTTGTACTGCACCCATTTTGTTgg              >  1:46913/1‑36 (MQ=255)
                      ttCAGCTTCAAGTTGTACTGCACCCATTTTGTTGGa             >  1:5517261/1‑36 (MQ=255)
                      ttCAGCTTCAAGTTGTACTGCACCCATTTTGTTGGa             <  1:4238194/36‑1 (MQ=255)
                      ttCAGCTTCAAGTTGTACTGCACCCATTTTGTTGGa             >  1:6681413/1‑36 (MQ=255)
                        cAGCTTCAAGTTGTACTGCACCCATTTTGTTGGACg           <  1:2280289/36‑1 (MQ=255)
                         aGCTTCAAATTGTACTGCACCCATTTTGTTGGACGa          <  1:2794435/36‑1 (MQ=255)
                          gCTTCAAGTTGTACTGCACCCATTTTGTTGGACGAt         <  1:2391857/36‑1 (MQ=255)
                           cTTCAAGTTGTACTGCACCCATTTTGTTGGACGATg        >  1:4847869/1‑36 (MQ=255)
                            ttCAAGTTGTACTGCACCCATTTTGTTGGACGATGa       >  1:1208667/1‑36 (MQ=255)
                             tCAATTTGTACTGCACCCATTTTGTTGGACGATGaa      >  1:5484690/1‑36 (MQ=12)
                             tCAAGTTGTACTGCACCCATTTTGTTGGACGATGaa      >  1:6663516/1‑36 (MQ=255)
                              cAAGTTGTACTGCACCCATTTTGTTGGACGATGaaa     >  1:3689272/1‑36 (MQ=40)
                                tgTTGTACTGCACCCATCTCGTTCGACGATGaaacc   >  1:678546/2‑34 (MQ=11)
                                aGTTGTACTGCACCCATTTTGTTGGACGATGAAATg   >  1:2642380/1‑36 (MQ=35)
                                 gTTGTACTGCACCCATTTTGTTGGGCGATGAGATgg  <  1:7313703/36‑1 (MQ=11)
                                 gTTGTACGGCACCCAGTTTGTTGGACGATGAAATgg  <  1:6592054/36‑1 (MQ=11)
                                   |                                 
GAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGG  >  REL606/588460‑588528

Base quality scores:  ATCG  < 3 ≤  ATCG  < 11 ≤  ATCG  < 20 ≤  ATCG  < 30 ≤  ATCG  < 32 ≤  ATCG