BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	annotation	gene	product
*	?	REL606	= 590471	NA (NA)	31 (0.600)	22/66	1.0	noncoding (1977/1977 nt)	IS150	repeat region
*	?	REL606	= 3630716	NA (NA)	31 (0.600)	22/66	1.0	intergenic (‑171/‑305)	ldrD/yhjV	toxic polypeptide, small/predicted transporter


TAACTGTCCAACTTTTTGGGGTCAGTACACC...................................  >  REL606/590443‑590471


.............................CCGGTGAGGCGCAATGTTGCGGGGGCTTTATCCCTGG  <  REL606/3630716‑3630680


TAACTGTCCAACTTTTTGGGGTCAGTACACCGGTGA                                <  1:2132306/36‑1 (MQ=1)


 AACTGTCCAACTTTTTGGGGTCAGTACACCGGTGAG                               <  1:90138/36‑1 (MQ=1)


 AACTGTCCAACTTTTTGGGGTCAGTACACCGGTGAG                               >  1:5876151/1‑36 (MQ=1)


  ACTGTCCAACTTTTTGGGGTCAGTACACCGGTGAGG                              <  1:981675/36‑1 (MQ=1)


  ACTGTCCAACTTTTTGGGGTCAGTACACCGGTGAGG                              >  1:2564109/1‑36 (MQ=1)


   CTGTCCAACTTTTTGGGGTCAGTACACCGGTGAGGC                             >  1:1466789/1‑36 (MQ=1)


    TGTCCAACTTTTTGGGGTCAGTACACCGGTGAGGCG                            <  1:4266049/36‑1 (MQ=1)


    TGTCCAACTTTTCGGGGTCAGTACACCGGTGAGGCG                            <  1:4077988/36‑1 (MQ=0)


      TCCAACTTTTTGGGGTCAGTACACCGGTGAGGCGCA                          <  1:6375558/36‑1 (MQ=1)


      TCCAACTTTTTGGGGTCAGTACACCGGTGAGGCGCA                          <  1:2614902/36‑1 (MQ=1)


       CCAACTTTTTGGGGTCAGTACACCGGTGAGGCGCAA                         <  1:716413/36‑1 (MQ=1)


       CCAACTTTTTGGGGTCAGTACACCGGTGAGGCGCAA                         <  1:5069750/36‑1 (MQ=1)


       CCAACTTTTTGGGGTCAGTACACCGGTGAGGCGCAA                         <  1:4681496/36‑1 (MQ=1)


        CAACTTTTTGGGGTCAGTACACCGGTGAGGCGCAAT                        >  1:901504/1‑36 (MQ=1)


          ACTTTTTGGGGTCAGTACACCGGTGAGGCGCAATGT                      <  1:5438748/36‑1 (MQ=1)


          ACTTTTTGGGGTCAGTACACCGGTGAGGCGCAATGT                      <  1:4682028/36‑1 (MQ=1)


            TTTTTGGGGTCAGTACACCGGTGAGGCGCAATGTTG                    <  1:5799758/36‑1 (MQ=1)


               TTGGGGTCAGTACACCGGTGAGGCGCAATGTTGCGG                 >  1:214556/1‑36 (MQ=1)


               TTGGGGTCAGTACACCGGTGAGGCGCAATGTTGCGG                 >  1:2208583/1‑36 (MQ=1)


                 GGGGTCAGTACACCGGTGAGGCGCAATGTTGCGGGG               >  1:1096659/1‑36 (MQ=1)


                 GGGGTCAGTACACCGGTGAGGCGCAATGTTGCGGGG               <  1:309842/36‑1 (MQ=1)


                 GGGGTCAGTACACCGGTGAGGCGCAATCTTGCGGGG               >  1:1106860/1‑36 (MQ=0)


                  gtGTCAGTACACCGGTGAGGCGCAATGTTGCGGGGG              <  1:6562453/34‑1 (MQ=1)


                  GGGTCAGTACACCGGTGAGGCGCAATGTTGCGGGGG              <  1:4940181/36‑1 (MQ=1)


                      CAGTACACCGGTGAGGCGCAATGTTGCGGGGGCTTT          <  1:1764078/36‑1 (MQ=32)


                      CAGTACACCGGTGAGGCGCAATGTTGCGGGGGCTTT          >  1:3960975/1‑36 (MQ=32)


                        GTACACCGGTGAGGCGCAATGTTGCGGGGGCTTTAT        >  1:960335/1‑36 (MQ=38)


                        GTACACCGGTGAGGCGCAATGTTGCGGGGGCTTTAT        <  1:6787124/36‑1 (MQ=38)


                           CACCGGTGAGGCGCAATGTTGCGGGGGCTTTATCCC     <  1:5562980/36‑1 (MQ=38)


                           CACCGGTGAGGCGCAATGTTGCGGGGGCTTTATCCC     >  1:4355364/1‑36 (MQ=38)


                           CACCGGTGAGGCGCAATGTTGCGGGGGCTTTATCCC     <  1:4475735/36‑1 (MQ=38)


                             CCGGTGGGGCGCAATGTTGCGGGGGCTTTATCCCTG   <  1:6058166/36‑1 (MQ=255)


                             CCGGTGAGGCGCAATGTTGCGGGGGGTTTATCCCTG   >  1:5765747/1‑36 (MQ=255)


                             CCGGTGAGGCGCAATGTTGCGGGGGCTTTATCCCTG   <  1:3012278/36‑1 (MQ=38)


                             CCGGTGAGGCGCAATGTTGCGGGGGCTTTATCCCTG   <  1:1224555/36‑1 (MQ=38)


                             CCGGTGAGGCGCAATGTTGCGGGGGCTTTATCCCTG   >  1:1727602/1‑36 (MQ=38)


                             CCGGTGAGGCGCAATGTTGCGGGGGCTTTATCCCTG   >  1:7240647/1‑36 (MQ=38)


                             CCGGTGAGGCGCAATGTTGCGGGGGCTTCATCCCTG   >  1:6450716/1‑36 (MQ=0)


                              CGGTGAGGCGCAATGTTGCGGGGGCTTTATCCCTGG  >  1:4268501/1‑36 (MQ=38)


                              CGGTGAGGCGCAATGTTGCGGGGGCTTTATCCCTGG  >  1:1727113/1‑36 (MQ=38)


                              CGGTGAGGCGCAATGTTGCGGGGGCTTTATCCCTGG  >  1:2189543/1‑36 (MQ=38)


                              CGGTGAGGCGCAATGTTGCGGGGGCTTTATCCCTGG  <  1:5592623/36‑1 (MQ=38)


                              CGGTGAGGCGCAATGTTGCGGGGGCTTTATCCCTGG  >  1:3312084/1‑36 (MQ=38)


                              CGGTGAGGCGCAATGTTGCGGGGGCTTTAACCCTGG  >  1:4363214/1‑36 (MQ=255)


                              CGGGGAGGCGCAATGTTGCGGGGGCTTTATCCCTGG  <  1:6359/36‑1 (MQ=255)


TAACTGTCCAACTTTTTGGGGTCAGTACACC...................................  >  REL606/590443‑590471


.............................CCGGTGAGGCGCAATGTTGCGGGGGCTTTATCCCTGG  <  REL606/3630716‑3630680

Base quality scores:


ATCG

< 3 ≤


ATCG

< 11 ≤


ATCG

< 22 ≤


ATCG

< 30 ≤


ATCG

< 32 ≤


ATCG