New junction evidence
  seq id position reads (cov) reads (cov) score skew annotation gene product
* ? REL606 241691 =NA (NA)50 (0.970) 35/66 0.1 noncoding (435/768 nt) IS1 repeat region
?REL606 3893554 = NA (NA)noncoding (1/1443 nt) IS150 repeat region

Only 100 of 107 total aligned reads displayed.

TACGTGCGCAACAACCGTCTTCCGGAGACTGTCATAC...................................  <  REL606/241727‑241691
...................................ACTGTACTGCACCCATTTTGTTGGACGATGAAATGGA  >  REL606/3893554‑3893588
                                                                        
aACGTGCGCAACAACCGTCTTCCGGAGACTGTCATA                                      <  1:364925/35‑1 (MQ=38)
aACGTGCGCAACAACCGTCTTCCGGAGACTGTCATA                                      <  1:5954080/35‑1 (MQ=38)
aACGTCCGCAACAACCGTCTTCCGGAGACTGTCATA                                      <  1:7143117/35‑1 (MQ=255)
TACGTGCGCAACAACCGTCTTCCGGAGACTGTGATA                                      >  1:5322537/1‑36 (MQ=255)
TACGTGCGCAACAACCGTCTTCCGGAGACTGTCATA                                      <  1:3869828/36‑1 (MQ=38)
TACGTGCGCAACAACCGTCTTCCGGAGACTGTCATA                                      >  1:2023676/1‑36 (MQ=38)
TACGTGCGCAACAACCGTCTTCCGGAGACTGTCATA                                      >  1:1859467/1‑36 (MQ=38)
TACGTGCGCAACAACCGTCTTCCGGAGACTGTCATA                                      >  1:1844331/1‑36 (MQ=38)
TACGTGCGCAACAACCGTCTTCCGGAGACTGTCATA                                      >  1:3127851/1‑36 (MQ=38)
TACGTGCGCAACAACCGTCTTCCGGAGACTGTCATA                                      <  1:1774572/36‑1 (MQ=38)
TACGTGCGCAACAACCGTCTTCCGGAGACTGTCATA                                      <  1:3002243/36‑1 (MQ=38)
TACGTGCGCAACAACCGTCTTCCGGAGACTGTCATA                                      >  1:5966258/1‑36 (MQ=38)
TACGTGCGCAACAACCGTCTTCCGGAGACTGTCATA                                      >  1:3259514/1‑36 (MQ=38)
TACGTGCGCAACAACCGTCTTCCGGAGACTGTCATA                                      >  1:5223819/1‑36 (MQ=38)
TACGTGCGCAACAACCGTCTTCCGGAGACTGTCATA                                      <  1:6526299/36‑1 (MQ=38)
TACGTGCGCAACAACCGTCTTCCGGAGACTGTCATA                                      <  1:2665811/36‑1 (MQ=38)
TACGTGCGCAACAACCGTCTTCCGGAGACTGTCATA                                      >  1:4972794/1‑36 (MQ=38)
TACGTGCGCAACAACCGTCTTCCGGAGACTGTCATA                                      >  1:1122069/1‑36 (MQ=38)
TACGTGCACAACAACCGTCTTCCGGAGACTGTCATA                                      <  1:218348/36‑1 (MQ=255)
TACGGGCGCAACAACCGTCTTCCGGAGACTGTCATA                                      <  1:4938490/36‑1 (MQ=255)
 ACGTGGGCAACAACCGTCTTCCGGAGACTGTCATAC                                     <  1:5879282/36‑1 (MQ=0)
 ACGTGCGCAACATCCGTCTTCCGGAGACTGTCATAC                                     <  1:2337012/36‑1 (MQ=0)
 ACGTGCGCAACAACCGTCTTCCGGAGACTGTCATAt                                     >  1:1222293/1‑35 (MQ=1)
 ACGTGCGCAACAACCGTCTTCCGGAGACTGTCATAC                                     >  1:3077827/1‑36 (MQ=1)
 ACGTGCGCAACAACCGTCTTCCGGAGACTGTCATAC                                     >  1:5436806/1‑36 (MQ=1)
 ACGTGCGCAACAACCGTCTTCCGGAGACTGTCATAC                                     >  1:3216514/1‑36 (MQ=1)
 ACGTGCGCAACAACCGTCTTCCGGAGACTGTCATAC                                     >  1:5599591/1‑36 (MQ=1)
 ACGTGCGCAACAACCGTCTTCCGGAGACTGTCATAC                                     >  1:2766010/1‑36 (MQ=1)
 ACGTGCGCAACAACCGTCTTCCGGAGACTGTCATAC                                     >  1:2614773/1‑36 (MQ=1)
 ACGTGCGCAACAACCGTCTTCCGGAGACTGTCATAC                                     <  1:6153542/36‑1 (MQ=1)
 ACGTGCGCAACAACCGTCTTCCGGAGACTGTCATAC                                     >  1:1779279/1‑36 (MQ=1)
 ACGTGCGCAACAACCGTCTTCCGGAGACTGTCATAC                                     <  1:5272342/36‑1 (MQ=1)
 ACGTGCGCAACAACCGTCTTCCGGAGACTGTCATAC                                     >  1:6193027/1‑36 (MQ=1)
 ACGTGCGCAACAACCGTCTTCCGGAGACTGTCATAC                                     >  1:6403068/1‑36 (MQ=1)
 ACGTGCGCAACAACCGTCTTCCGGAGACTGTCATAC                                     >  1:455612/1‑36 (MQ=1)
 ACGTGCGCAACAACCGTCTCCCGGAGACTGTCATAC                                     >  1:859754/1‑36 (MQ=0)
  CGTGCGCAACAACCGTCTTCCGGAGACTGTCATACT                                    <  1:502166/36‑1 (MQ=1)
  CGTGCGCAACAACCGTCTTCCGGAGACTGTCATACT                                    <  1:4671122/36‑1 (MQ=1)
     GCGCAACAACCGTCTTCCGGAGACTGTCATACTGTA                                 <  1:3137445/36‑1 (MQ=1)
     GCGCAACAACCGTCTTCCGGAGACTGTCATACTGTA                                 >  1:2433986/1‑36 (MQ=1)
      CGCAACAACCGTCTTCCGGAGACTGTCATACTGTAC                                <  1:3612502/36‑1 (MQ=1)
       tCAACAACCGTCTTCCGGAGACTGTCATACTGTACT                               <  1:6171640/35‑1 (MQ=1)
       GCAACAACCGTCTTCCGGAGACTGTCATACTGTACT                               <  1:2408957/36‑1 (MQ=1)
       GCAACAACCGTCTTCCGGAGACTGTCATACTGTACT                               <  1:1481690/36‑1 (MQ=1)
       GCAACAACCGTCTTCCGGAGACTGTCATACTGTACT                               >  1:6695984/1‑36 (MQ=1)
         AACAACCGTCTTCCGGAGACTGTCATACTGTACTGC                             >  1:4614831/1‑36 (MQ=1)
          ACAACCGTCTTCCGGAGACTGTCATACTGTACTGCA                            <  1:5875135/36‑1 (MQ=1)
            AACCGTCTTCCGGAGGCTGTCATACTGTACTGCACC                          <  1:3511842/36‑1 (MQ=0)
            AACCGTCTTCCGGAGACTGTCATACTGTACTGCACC                          <  1:396138/36‑1 (MQ=1)
            AACCGTCTTCCGGAGACTGTCATACTGTACTGCACC                          <  1:6800822/36‑1 (MQ=1)
             ACCGTCTTCCGGAGACTGTCATACTGTACTTCACCC                         >  1:47554/1‑36 (MQ=0)
              CCGTCTTCCGGAGACTGTCATACTGTACTGCACCCA                        <  1:6209027/36‑1 (MQ=1)
              CCGTCTTCCGGAGACTGTCATACTGTACTGCACCCA                        >  1:1553603/1‑36 (MQ=1)
                GTCTTCCGGAGACTGTCATACTGTACTGCACCCATT                      >  1:6945892/1‑36 (MQ=35)
                GTCTTCCGGAGACTGTCATACTGTACTGCACCCATT                      <  1:619376/36‑1 (MQ=35)
                 TCTTCCGGAGACTGTCATACTGTACTGCACCCATTT                     >  1:2663354/1‑36 (MQ=38)
                  CTTCCGGAGACTGTCATACTGTACTGCACCAATTTT                    <  1:6930115/36‑1 (MQ=255)
                   TTCCGGAGACTGTCATACTGTACTGCACCCATTTTG                   <  1:5429495/36‑1 (MQ=35)
                     CCGGAGACTGTCATACTGTACTGCACCCATTTTGTT                 >  1:817230/1‑36 (MQ=1)
                     CCGGAGACTGTCATACTGTACTGCACCCATTTTGTT                 <  1:805812/36‑1 (MQ=1)
                     CCGGAGACTGTCATACTGTACTGCACCCATTTTGTT                 >  1:2929249/1‑36 (MQ=1)
                      CGGAGACTGTCATACTGTACTGCACCCATTTTGTTG                <  1:5722748/36‑1 (MQ=1)
                       GGAGGCTGTCATACTGTACTGCACCCATTTTGTTGG               <  1:1351082/36‑1 (MQ=0)
                       GGAGACTGTCATACTGTACTGCACCCATTTTGTTGG               >  1:6387019/1‑36 (MQ=1)
                       GGAGACTGTCATACTGTACTGCACCCATTTTGTTGG               >  1:5989714/1‑36 (MQ=1)
                       GGAGAATGTCATACTGTACTGCACCCATTTTGTTGG               <  1:7199295/36‑1 (MQ=0)
                        GAGACTGTCATACTGTACTGCACCCATTTTGTTAGA              >  1:2851044/1‑36 (MQ=0)
                         AGACTGTCATACTGTACTGCACCCATTTTGTTGGAC             >  1:5972300/1‑36 (MQ=1)
                          GACTGTCATACTGTACTGCACCCATTTTGTTGGACG            <  1:3548514/36‑1 (MQ=1)
                           ACTGTCATACTGTACTGCACCCATTTTGTTGGACGA           >  1:5390253/1‑36 (MQ=1)
                           ACTGTCATACTGTACTGCACCCATTTTGTTGGACGA           <  1:6152212/36‑1 (MQ=1)
                            CTGTCATACTGTACTGCACCCATTTTGTTGGACGAT          <  1:1105631/36‑1 (MQ=1)
                            CTGTCATACTGTACTGCACCCATTTTGTTGGACGAT          >  1:555253/1‑36 (MQ=1)
                            CTGTCATACTGTACTGCACCCATTTTGTTGGACGAT          >  1:5740107/1‑36 (MQ=1)
                            CTGTCATACTGTACTGCACCCATTTTGTTGGACGAT          >  1:5057340/1‑36 (MQ=1)
                            CTGTCATACTGTACTGCACCCATTTTGTTGGACGAT          >  1:6265379/1‑36 (MQ=1)
                             TGTCATACTGTACTGCACCCATTTTGTTGGACGATG         <  1:2682544/36‑1 (MQ=1)
                              GTCATACTGTACTGCACCCATTTTGTTGGACGATGA        >  1:4833681/1‑36 (MQ=1)
                              GTCATACTGTACTGCACCCATTTTGTTGGACGATGA        >  1:5140488/1‑36 (MQ=1)
                                CATTCTGTACTGCACCCATTTTGTTGGACGATGAAA      <  1:4411492/36‑1 (MQ=0)
                                CATACTGTACTGCACCCATTTTGTTGGACGATGAAA      >  1:1117527/1‑36 (MQ=1)
                                CATACTGTACTGCACCCATTTTGTTGGACGATGAAA      >  1:460814/1‑36 (MQ=1)
                                 ATACTGTACTGCACCCATTTTGTTGGACGATGAAAT     >  1:2277387/1‑36 (MQ=1)
                                  TACTGTACTGCACCCATTTTGTTGGACGATGAAATG    >  1:1182154/1‑36 (MQ=1)
                                   tCTGTACTGCACCCATTTTGTTGGACGATGAAATGG   <  1:6065466/35‑1 (MQ=1)
                                   ACTGTACTGCACCCATTTTGTTGGACGATGAAATGG   <  1:5442049/36‑1 (MQ=1)
                                   ACTGTACTGCACCCATTTTGTTGGACGATGAAATGG   >  1:3591904/1‑36 (MQ=1)
                                   ACTGTACTGCACCCATTTTGTTGGACGATGAAATGG   <  1:7237357/36‑1 (MQ=1)
                                   ACTGTACTGCACCCATTTTGTTGGACGATGAAATGG   <  1:6934555/36‑1 (MQ=1)
                                   ACTGTACTGCACCCATTTTGTTGGACGATGAAATGG   <  1:161687/36‑1 (MQ=1)
                                   ACTGTACGGCACCCATTTTGTTGGACGATGAAATGG   <  1:6816005/36‑1 (MQ=0)
                                    CTGTACTGCACCCATTTTGTTGGACGATGAAATGGA  >  1:4191962/1‑36 (MQ=1)
                                    CTGTACTGCACCCATTTTGTTGGACGATGAAATGGA  <  1:15189/36‑1 (MQ=1)
                                    CTGTACTGCACCCATTTTGTTGGACGATGAAATGGA  <  1:3799126/36‑1 (MQ=1)
                                    CTGTACTGCACCCATTTTGTTGGACGATGAAATGGA  >  1:6267920/1‑36 (MQ=1)
                                    CTGTACTGCACCCATTTTGTTGGACGATGAAATGGA  >  1:5401769/1‑36 (MQ=1)
                                    CTGTACTGCACCCATTTTGTTGGACGATGAAATGGA  >  1:4184578/1‑36 (MQ=1)
                                    CTGTACTGCACCCATTTTGTTGGACGATGAAATGGA  >  1:4912996/1‑36 (MQ=1)
                                    CTGTACTGCACCCATTTTGTTGGACGATGAAATGGA  <  1:4051813/36‑1 (MQ=1)
                                    CTGCACTGCACCCATTTTGTTGGACGATGAAATGGA  >  1:1214835/1‑36 (MQ=0)
                                                                        
TACGTGCGCAACAACCGTCTTCCGGAGACTGTCATAC...................................  <  REL606/241727‑241691
...................................ACTGTACTGCACCCATTTTGTTGGACGATGAAATGGA  >  REL606/3893554‑3893588

Base quality scores:  ATCG  < 3 ≤  ATCG  < 10 ≤  ATCG  < 18 ≤  ATCG  < 29 ≤  ATCG  < 32 ≤  ATCG