New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 140096331 (0.680)26 (0.570) 8/56 2.9 43.3% coding (773/1311 nt) abgA predicted peptidase, aminobenzoyl‑glutamate utilization protein
?REL606 = 3875872 37 (0.660)intergenic (‑306/+47) glmU/atpC bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon

TCGCTGTGCGGGGCGATTGCATGCAGTGCAAGAGTGGCTT..................................  >  REL606/1400924‑1400963
..................................TGGCTTTTTTTTGCGCGTGTGACCCGTCCTGAATAGCGTT  <  REL606/3875872‑3875839
                                                                          
      TGCGGGGCGATTGCATGCAGTGCAAGATTGGCTTT                                   >  1:10692437/1‑35 (MQ=0)
      TGCGGGGCGATTGCATGCAGTGCAAGAGTGGCTTT                                   >  1:9077058/1‑35 (MQ=1)
      TGCGGGGCGATTGCATGCAGTGCAAGAGTGGCTTT                                   >  1:11595850/1‑35 (MQ=1)
      TGCGGGGCGATTGCATGCAGTGCAAGAGTGGCTTT                                   >  1:1922624/1‑35 (MQ=1)
       GCGGGGCGATTGCGTGCAGTGCAAGAGTGGCTTTT                                  >  1:11454288/1‑35 (MQ=0)
       GCGGGGCGATTGCATGCAGTGCAAGAGTGGCTTTT                                  >  1:6930591/1‑35 (MQ=1)
        CGGGGCGATTGCATGCAGTGCAAGAGTGGCTTTTT                                 >  1:2989822/1‑35 (MQ=1)
         GGGGCGATTGCATGCAGTGCAAGAGTGGCTTTTTT                                >  1:3475527/1‑35 (MQ=1)
          GGGCGATTGCATGCAGTGCAAGAGTGGCTTTTTTg                               >  1:15488609/1‑34 (MQ=1)
          GGGCGATTGCATGCAGTGCAAGAGTGGCTTTTTTc                               >  1:1383869/1‑34 (MQ=1)
          GGGCGATTGCATGCAGTGCAAGAGTGGCTTTTTTT                               >  1:15218745/1‑35 (MQ=1)
           GGCGATTGCATGCAGTGCAAGAGTGGCTTTTTTTg                              >  1:15140260/1‑34 (MQ=1)
           GGCGATTGCATGCAGTGCAAGAGTGGCTTTTTTTg                              >  1:12943916/1‑34 (MQ=1)
           GGCGATTGCATGCAGTGCAAGAGTGGCTTTTTTTg                              >  1:7316277/1‑34 (MQ=1)
           GGCGATTGCATGCAGTGCAAGAGTGGCTTTTTTTT                              >  1:6303155/1‑35 (MQ=1)
           GGCGATTGCATGCAGTGCAAGAGTGGCTTTTGTTT                              >  1:12004450/1‑35 (MQ=0)
            GCGATTGCATGCAGTGCAAGAGTGGCTTTTTTTgt                             >  1:14373518/1‑33 (MQ=1)
            GCGATTGCATGCAGTGCAAGAGTGGCTTTTTTTTt                             >  1:1763987/1‑34 (MQ=1)
            GCGATTGCATGCAGTGCAAGAGTGGCTTTTTTTTt                             >  1:4934407/1‑34 (MQ=1)
             CGATTGCATGCAGTGCAAGAGTGGCTTTTTTTTcc                            >  1:10563862/1‑33 (MQ=1)
             CGATTGCATGCAGTGCAAGAGTGGCTTTTTTTTGC                            >  1:9001674/1‑35 (MQ=1)
             CGATTGCATGCAGTGCAAGAGTGGCTTTTTTTTGC                            >  1:5064400/1‑35 (MQ=1)
             CGATTGCATGCAGTGCAAGAGTGGCTTTTGTTTGC                            >  1:14248923/1‑35 (MQ=0)
               ATTGCATGCAGTGCAAGAGTGGCTTTTTTTTTCGC                          >  1:10032219/1‑35 (MQ=0)
               ATTGCATGCAGTGCAAGAGTGGCTTTTTTTTGCGC                          >  1:4498298/1‑35 (MQ=1)
                TTGCATGCAGTGCAAGAGTGGCTTTTTTTGGCGCc                         >  1:11801616/1‑34 (MQ=0)
                                                                          
TCGCTGTGCGGGGCGATTGCATGCAGTGCAAGAGTGGCTT..................................  >  REL606/1400924‑1400963
..................................TGGCTTTTTTTTGCGCGTGTGACCCGTCCTGAATAGCGTT  <  REL606/3875872‑3875839

Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 24 ≤  ATCG  < 29 ≤  ATCG  < 33 ≤  ATCG