Read alignment evidence...
  seq id position change freq score reads annotation genes product
*REL6062,774,4320G→T10.2% 11.988intergenic (+409/+29)insL‑5/insK‑3putative transposase insL for insertion sequence IS186/IS150 putative transposase
Reads supporting (aligned to +/- strand):  new base (3/6):  ref base (24/55):  total (27/61)

CATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAA  >  REL606/2774398‑2774465
                                  |                                 
cATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAg                                   <  1:12048009/35‑1 (MQ=255)
cATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAg                                   <  1:1095302/35‑1 (MQ=255)
 aTTCGAATTGTTTGGGTTCGAACGTAAGCCTCAgg                                  <  1:2448332/35‑1 (MQ=255)
 aTTCGAATTGTTTGGGTTCGAACGTAAGCCTCAgg                                  <  1:9242981/35‑1 (MQ=255)
 aTTCGAATTGTTTGGGTTCGAACGTAAGCCTCAgg                                  <  1:80930/35‑1 (MQ=255)
  ttCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGt                                 <  1:1222435/35‑1 (MQ=255)
  ttCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGt                                 <  1:13450277/35‑1 (MQ=255)
  ttCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGt                                 <  1:13734215/35‑1 (MQ=255)
   tctaaTTGCTTGGGTTCGAACGTAAGACTCAGGtt                                >  1:12985766/4‑35 (MQ=25)
   tCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGtt                                <  1:4620567/35‑1 (MQ=255)
    cGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTg                               <  1:9069766/35‑1 (MQ=255)
    cGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTg                               <  1:13248996/35‑1 (MQ=255)
    cGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTg                               <  1:17086507/35‑1 (MQ=255)
     gAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGt                              <  1:5127861/35‑1 (MQ=255)
      taTTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTa                             <  1:5745731/34‑1 (MQ=255)
      aaTTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTa                             <  1:11473854/35‑1 (MQ=255)
      aaTTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTa                             <  1:17331184/35‑1 (MQ=255)
      aaTTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTa                             >  1:14168407/1‑35 (MQ=255)
      aaTTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTa                             >  1:4401744/1‑35 (MQ=255)
       aTTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTAc                            >  1:16745068/1‑35 (MQ=255)
       aTTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTAc                            >  1:14823700/1‑35 (MQ=255)
       aTTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTAc                            <  1:5689042/35‑1 (MQ=255)
       aTTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTAc                            <  1:7748078/35‑1 (MQ=255)
       aTTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTAc                            <  1:10378278/35‑1 (MQ=255)
        ttGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACt                           <  1:13929435/35‑1 (MQ=255)
         tGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTg                          <  1:16518370/35‑1 (MQ=255)
         tGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTg                          <  1:9518006/35‑1 (MQ=255)
         tGTTTGGGTCCGGACATTAGCCTCCGCTTTTACTg                          <  1:17390687/35‑1 (MQ=2)
           tttGGGTTCGAACGTAAGCCTCAGGTTGTACTGAc                        >  1:11935261/1‑35 (MQ=255)
           tttGGGTTCGAACGTAAGCCTCAGGTTGTACTGAc                        <  1:7648419/35‑1 (MQ=255)
           tttGGGTTCGAACGTAAGCCTCAGGTTGTACTGAc                        <  1:10408157/35‑1 (MQ=255)
            ttGGGTTAGAACGTAAGCCTCAGGTTGTACTGAcc                       <  1:10343321/35‑1 (MQ=255)
             tGGGTTCGAACGTAAGCCTCAGGTTGTACTGAccc                      >  1:9045526/1‑35 (MQ=255)
             tGGGTTCGAACGTAAGCCTCAGGTTGTACTGAccc                      >  1:9646445/1‑35 (MQ=255)
              gggTTCGAACGTAAGCCTCAGGTTGTACTGAcccc                     <  1:2336625/35‑1 (MQ=255)
              gggTTCGAACGTAAGCCTCAGGTTGTACTGAcccc                     <  1:13313233/35‑1 (MQ=255)
              gggTTCGAACGTAAGCCTCAGGTTGTACTGAcccc                     >  1:5434633/1‑35 (MQ=255)
              gggTTCGAACGTAAGCCTCAGGTTGTACTGAcccc                     <  1:5956461/35‑1 (MQ=255)
               ggTTCGAACGTAAGCCTCAGGTTGTACTGACCCCa                    <  1:9241267/35‑1 (MQ=255)
               ggTTCGAACGTAAGCCTCAGGTTGTACTGACCCCa                    <  1:8923368/35‑1 (MQ=255)
               ggTTCGAACGTAAGCCTCAGGTTGTACTGACCCCa                    <  1:11636741/35‑1 (MQ=255)
                gTTCGAACGTAAGCCTCAGGTTGTACTGACCCCaa                   <  1:14006885/35‑1 (MQ=255)
                gTTCGAACGTAAGCCTCAGGTTGTACTGACCCCaa                   <  1:3884794/35‑1 (MQ=255)
                gTTCGAACGTAAGCCTCAGGTTGTACTGACCCCaa                   <  1:8976352/35‑1 (MQ=255)
                gTTCGAACGTAAGCCTCAGGTTGTACTGACCCCaa                   >  1:7028080/1‑35 (MQ=255)
                gTTCGAACGTAAGCATCAGGTTGTACTGACCCCaa                   <  1:4279258/35‑1 (MQ=255)
                  tCGAACGTAAGCCTCAGGTTGTACTGACCCCaaaa                 >  1:6671793/1‑35 (MQ=255)
                  tCGAACGTAAGCCTCAGGTTGTACTGACCCCaaaa                 <  1:8358058/35‑1 (MQ=255)
                  tCGAACGTAAGCCTCAGGTTGTACTGACCCCaaaa                 >  1:10773737/1‑35 (MQ=255)
                  tCGAACGTAAGCCTCAGGTTGTACTGACCCCaaaa                 <  1:9444212/35‑1 (MQ=255)
                  tCGAACGTAAGCCTCAGGTTGTACTGACCCCaaaa                 >  1:13105571/1‑35 (MQ=255)
                   cGAACGTAAGCCTCAGGTTGTACTGACCCCaaaaa                <  1:7895671/35‑1 (MQ=255)
                   cGAACGTAAGCCTCAGGTTGTACTGACCCCaaaaa                >  1:8955749/1‑35 (MQ=255)
                   cGAACGTAAGCCTCAGGTTGTACTGACCCCaaaaa                >  1:11990754/1‑35 (MQ=255)
                    gAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAg               <  1:3439383/35‑1 (MQ=255)
                     aaCGTAAGCCTCAGGTTGTACTGACCCCAAAAAGt              <  1:13006693/35‑1 (MQ=255)
                     aaCGTAAGCCTCAGGTTGTACTGACCACAAAAAGt              <  1:14208854/35‑1 (MQ=255)
                      aCGTAAGCCTCAGGTTGTACTGACCCCAAAAAGtt             >  1:14815601/1‑35 (MQ=255)
                      aCGTAAGCCTCAGGTTGTACTGACCCCAAAAAGtt             >  1:18089213/1‑35 (MQ=255)
                      aCGTAAGCCTCAGGTTGTACTGACCCCAAAAAGtt             <  1:18264376/35‑1 (MQ=255)
                       cGTTAGCCTCATTATGTACTGACCCCAAAAAGTTg            <  1:9580329/35‑1 (MQ=2)
                       cGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTg            <  1:11756150/35‑1 (MQ=255)
                       cGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTg            >  1:8665276/1‑35 (MQ=255)
                       agaaaGTCTCATTTTGTACTGACCCCAAAAAGTTg            <  1:32033/32‑1 (MQ=0)
                       agaaaGTCTCATTTTGTACTGACCCCAAAAAGTTg            >  1:2620468/4‑35 (MQ=0)
                        gataGCCTCATTATGTACTGACCCCAAAAAGTTgg           <  1:3200920/32‑1 (MQ=0)
                        gaaaGTCTCATTTTGTACTGACCCCAAAAAGTTgg           >  1:12823790/3‑35 (MQ=1)
                        gaaaGTCTCATTTTGTACTGACCCCAAAAAGTTgg           <  1:6314155/33‑1 (MQ=1)
                        gTAAGCCTCTGGTTGTACTGACCCCAAAAAGTTgg           <  1:11692051/35‑1 (MQ=255)
                        gTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTgg           >  1:15296058/1‑35 (MQ=255)
                        gTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTgg           >  1:28098/1‑35 (MQ=255)
                         tAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGa          >  1:3414802/1‑35 (MQ=255)
                         tAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGa          <  1:6636440/35‑1 (MQ=255)
                         ataGCCTCATTATGTACTGACCCCAAAAAGTTGGa          <  1:16670893/33‑1 (MQ=1)
                         aaaGTCTCATTTTGTACTGACCCCAAAAAGTTGGa          >  1:7427046/2‑35 (MQ=1)
                         aaaGTCTCATTTTGTACTGACCCCAAAAAGTTGGa          <  1:17154099/34‑1 (MQ=1)
                          aaGCCTCAGGTTGTACTGACCCCAAAAAGTTGGAc         <  1:376235/35‑1 (MQ=255)
                          aaGCCTCAGGTTGTACTGACCCCAAAAAGTTGGAc         <  1:7033877/35‑1 (MQ=255)
                          aaGCCTCAGGTTGTACTGACCCCAAAAAGTTGGAc         <  1:2733054/35‑1 (MQ=255)
                           aGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACa        <  1:8127027/35‑1 (MQ=255)
                           aGCCTCAGGTTGTAATGACCCCAAAAAGTTGGACa        <  1:15373316/35‑1 (MQ=255)
                            gCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAg       <  1:14769972/35‑1 (MQ=255)
                             ccTCAGGTTGTACTGACCCCAAAAAGTTGTACAGt      >  1:12241316/1‑35 (MQ=255)
                             ccTCAGGTTGTACTGACCCCAAAAAGTTGGACAGt      <  1:2831300/35‑1 (MQ=255)
                             ccTCAGGTTGTACTGACCCCAAAAAGTTGGACAGt      >  1:11288602/1‑35 (MQ=255)
                             ccTCAGGTTGTACTGACCCCAAAAAGTTGGACAGt      >  1:10300162/1‑35 (MQ=255)
                              cTCAGGTTGTACTGACCCCAAAAAGTTGGACAGtt     <  1:17738718/35‑1 (MQ=255)
                               tCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTa    <  1:1554698/35‑1 (MQ=40)
                               tCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTa    <  1:11921923/35‑1 (MQ=40)
                                cAGGTTGTACTGACCCCAAAAGGTTGGACAGTTaa   >  1:13909356/1‑35 (MQ=255)
                                cAGGTTGTACTGACCCCAAAAAGTTGGACAGTTaa   <  1:32517/35‑1 (MQ=38)
                                cAGGTTGTACTGACCCCAAAAAGTTGGACAGTTaa   <  1:15448916/35‑1 (MQ=38)
                                cAGGTTGTACTGACCCCAAAAAGTTGGACAGTTaa   <  1:1142120/35‑1 (MQ=38)
                                 aGGTTGTACTGACCCCAAAAAGTTGGACAGTTaaa  <  1:14979577/35‑1 (MQ=38)
                                 aGGTTGTACTGACCCCAAAAAGTTGGACAGTTaaa  <  1:11544337/35‑1 (MQ=38)
                                  |                                 
CATTCGAATTGTTTGGGTTCGAACGTAAGCCTCAGGTTGTACTGACCCCAAAAAGTTGGACAGTTAAA  >  REL606/2774398‑2774465

Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 31 ≤  ATCG  < 33 ≤  ATCG