New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 140096331 (0.680)26 (0.570) 8/56 2.9 43.3% coding (773/1311 nt) abgA predicted peptidase, aminobenzoyl‑glutamate utilization protein
?REL606 = 3875872 37 (0.660)intergenic (‑306/+47) glmU/atpC bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon

AACGCTATTCAGGACGGGTCACACGCGCAAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTT  >  REL606/3875839‑3875906
                                 |                                  
aaCGCTATTCAGGACGGGTCACACGCGCAAAAAAa                                   >  1:4895652‑M2/1‑34 (MQ=255)
aaCGCTATTCAGGACGGGTCACACGCGCAAAAAAa                                   >  1:14939939‑M2/1‑34 (MQ=255)
aaCGCTATTCAGGACGGGTCACACGCGCAAAAAAa                                   >  1:1847608‑M2/1‑34 (MQ=255)
aaCGCTATTCAGGACGGGTCACACGCGCAAAAAAa                                   <  1:13748968‑M2/35‑2 (MQ=255)
aaCGCTATTCAGGACGGGTCACACGCGCAAAAAAa                                   <  1:13694690‑M2/35‑2 (MQ=255)
aaCGCTATTCAGGACGGGTCACACGCGCAAAAAAa                                   >  1:3770606‑M2/1‑34 (MQ=255)
aaCGCTATTCAGGACGGGTCACACGCGCAAAAAAa                                   <  1:8680483‑M2/35‑2 (MQ=255)
aaCGCTATTCAGGACGGGTCACACGCGCAAAAAAa                                   <  1:3940822‑M2/35‑2 (MQ=255)
aaCGCTATTCAGGACGGGTCACACGCGCAAAAAAa                                   >  1:844136‑M2/1‑34 (MQ=255)
aaCGATATTCAGGACGGGTCACACGAGCaaaaaaa                                   >  1:1723179/1‑35 (MQ=37)
 aCGCTATTCAGGACGGGTCACACGCGCAAAAAAaa                                  >  1:10846706‑M2/1‑33 (MQ=255)
  cGCTATTCAGGACGGGTCACACGCGCAAAAAAaag                                 <  1:16072350‑M2/35‑4 (MQ=255)
  cGCTATTCAGGACGGGTCACACGCGCAAAAAAaag                                 <  1:11464858‑M2/35‑4 (MQ=255)
   gCTATTCAGGACGGGTCACACGCGCAAAAAAaagc                                >  1:5966978‑M2/1‑31 (MQ=255)
   gCTATTCAGGACGGGTCACACGCGCAAAAAAaagc                                >  1:6299940‑M2/1‑31 (MQ=255)
   gCTATTCAGGACGGGTCACACGCGCAAAAAAaagc                                >  1:11661555‑M2/1‑31 (MQ=255)
   agtatTCAGGACGGGTCACACGCGCAAAAAAaagc                                >  1:4593528‑M2/3‑31 (MQ=255)
    cTATTCAGGACGGGTCACACGCGCAAAAAAaagcc                               <  1:6261655‑M2/35‑6 (MQ=255)
     tATTCAGGACGGGTCACACGCGCCAAAAGAagccc                              <  1:119853/35‑2 (MQ=37)
     tATTCAGGACGGGTCACACGCGCAAAAAAaagcca                              <  1:5160778‑M2/35‑7 (MQ=255)
      aTTCAGGACGGGTCACACGCGCAAAAAAaagccag                             >  1:15870502‑M2/1‑28 (MQ=255)
       ttCAGGACGGGTCACACGCGCAAAAAAaagccagc                            >  1:12227834‑M2/1‑27 (MQ=255)
       ttCAGGACGGGTCACACGCGCAAAAAAAagccagc                            <  1:7831388/35‑1 (MQ=255)
       ttCAGGACGGGTCACACGCGCAAAAAAAagccagc                            <  1:2313379/35‑1 (MQ=255)
        tCAGGACGGGTCACACGCGCTAAAAAAagccagcc                           <  1:7566119/35‑1 (MQ=255)
        tCAGGACGGGTCACACGCGCAAAAAAAagccagcc                           >  1:5725815/1‑35 (MQ=255)
        tCAGGACGGGTCACACGCGCAAAAAAAagccagcc                           >  1:6407453/1‑35 (MQ=255)
        tCAGGACGGGTCACACGCGCAAAAAAAagccagcc                           <  1:1379472/35‑1 (MQ=255)
         cAGGACGGGTCACACGCGCAAAAAAAAGCCAGCCt                          <  1:7644355/35‑1 (MQ=255)
           ggACGGGTCACACGCGCAAAAAAAAGCCAGCCTGt                        <  1:4321239/35‑1 (MQ=255)
           ggACGGGTCACACGCGCAAAAAAAAGCCAGCCTGt                        <  1:5481045/35‑1 (MQ=255)
            gACGGGTCACACGCGCAAAAAAAAGCCATCCTgag                       >  1:1005884/1‑33 (MQ=37)
            gACGGGTCACACGCGCAAAAAAAAGCCAGCCTGtt                       <  1:5049275/35‑1 (MQ=255)
            gACGGGTAACACGCGCAAAAAAAAGCCAGCCTGtt                       >  1:418146/1‑35 (MQ=255)
              cGGGTCACACGCGCAAAAAAAAGCCAGCCTGTTTc                     <  1:1477664/35‑1 (MQ=255)
                ggTCACACGCGCAAAAAAAAGCCAGCCTGTTTCCa                   >  1:6472772/1‑35 (MQ=255)
                ggTCACACGCGCAAAAAAAAGCCAGCCTGTTTCCa                   <  1:423998/35‑1 (MQ=255)
                  tCACACGCGCAAAAAAAAGCCAGCCTGTTTCCAGa                 >  1:1878933/1‑35 (MQ=255)
                  tCACACGCGCAAAAAAAAGCCAGCCTGTTTCCAGa                 <  1:4563806/35‑1 (MQ=255)
                      acGCGCAAAAAAAAGCCAGCCTGTTTCCAGACTgg             <  1:2514521/35‑1 (MQ=255)
                      acGCGCAAAAAAAAGCCAGCCTGTTTCCAGACTgg             <  1:1057904/35‑1 (MQ=255)
                      acGCGAAAAAAAAAGCCAGCCTGTTTCCAGACTgg             <  1:3320952/35‑1 (MQ=255)
                       ggcgccAAAAAaagccactcttgcactgcatgcaa            >  1:11801616‑M2/2‑11 (MQ=255)
                       cgcgCAAAAAAAAGCCAGCCTGTTTCCAGACTGGc            >  1:7153138/1‑35 (MQ=255)
                        gcgcAAAAAAaagccactcttgcactgcatgcaat           >  1:4498298‑M2/1‑10 (MQ=255)
                        gcgcAAAAAAAAGCCAGCCTGTTTCCAGACTGGCt           >  1:1317204/1‑35 (MQ=255)
                        gcgcAAAAAAAAGCCAGCCTGTTTCCAGACTGGCt           >  1:914482/1‑35 (MQ=255)
                        gcgaAAAAAAaagccactcttgcactgcatgcaat           >  1:10032219‑M2/1‑10 (MQ=255)
                          ggaaaaaaaagccactcttgcactgcatgcaatcg         >  1:10563862‑M2/3‑8 (MQ=255)
                          gcAAACAAaagccactcttgcactgcatgcaatcg         >  1:14248923‑M2/1‑8 (MQ=255)
                          gcAAAAAAaagccactcttgcactgcatgcaatcg         >  1:9001674‑M2/1‑8 (MQ=255)
                          gcAAAAAAaagccactcttgcactgcatgcaatcg         >  1:5064400‑M2/1‑8 (MQ=255)
                           cAAAAAAAAGCCAGCCTGTTTCCAGACTGGCtttt        <  1:857614/35‑1 (MQ=255)
                           acaaaaaaagccactcttgcactgcatgcaatcgc        >  1:14373518‑M2/3‑7 (MQ=255)
                           aaaaaaaaagccactcttgcactgcatgcaatcgc        >  1:1763987‑M2/2‑7 (MQ=255)
                           aaaaaaaaagccactcttgcactgcatgcaatcgc        >  1:4934407‑M2/2‑7 (MQ=255)
                            caaaaaaagccactcttgcactgcatgcaatcgcc       >  1:7316277‑M2/2‑6 (MQ=255)
                            caaaaaaagccactcttgcactgcatgcaatcgcc       >  1:12943916‑M2/2‑6 (MQ=255)
                            caaaaaaagccactcttgcactgcatgcaatcgcc       >  1:15140260‑M2/2‑6 (MQ=255)
                            aaacaaaagccactcttgcactgcatgcaatcgcc       >  1:12004450‑M2/1‑6 (MQ=255)
                            aaaaaaaagccactcttgcactgcatgcaatcgcc       >  1:6303155‑M2/1‑6 (MQ=255)
                            aaaaaaaaGCCAGCCTGTTTCCAGACTGGCttttt       >  1:1520555/1‑34 (MQ=255)
                            aaaaaaaaGCCAGCCTGTTTCCAGACTGGCttttt       >  1:1098601/1‑34 (MQ=255)
                            aaaaaaaaGCCAGCCTGTTTCCAGACTGGCttttt       >  1:4354233/1‑34 (MQ=255)
                            aaaaaaaaGCCAGCCTGTTTCCAGACTGGCTTTtg       <  1:3609953/35‑1 (MQ=255)
                             gaaaaaagccactcttgcactgcatgcaatcgccc      >  1:1383869‑M2/2‑5 (MQ=255)
                             caaaaaagccactcttgcactgcatgcaatcgccc      >  1:15488609‑M2/2‑5 (MQ=255)
                             aaaaaaagccactcttgcactgcatgcaatcgccc      >  1:15218745‑M2/1‑5 (MQ=255)
                             aaaaaaaGCCAGCCTGTTTCCAGACTGGCtttttt      >  1:1605282/1‑33 (MQ=255)
                             aaaaaaaGCCAGCCTGTTTACAGAATGGCTTTtgt      <  1:3879811/35‑1 (MQ=38)
                              aaaaaagccactcttgcactgcatgcaatcgcccc     >  1:3475527‑M2/1‑4 (MQ=255)
                               aaaaagccactcttgcactgcatgcaatcgccccg    >  1:2989822‑M2/1‑3 (MQ=255)
                               aaaaaGCCAGCCTGTTTCCAGACTGGCTTTTGTGc    <  1:6003138/35‑1 (MQ=255)
                               aaaaaGCCAGCCTGTTTCCAGACTGGCTTTTGTGc    <  1:4340187/35‑1 (MQ=255)
                                aaaagccactcttgcactgcatgcaatcgccccgc   >  1:6930591‑M2/1‑2 (MQ=255)
                                aaaagccactcttgcactgcacgcaatcgccccgc   >  1:11454288‑M2/1‑2 (MQ=255)
                                aaaaGCCAGCCTGTTTCCAGACTGGCTTTTGTGCt   <  1:3100909/35‑1 (MQ=255)
                                aaaaGCCAGCCTGTTTCCAGACTGGCTTTTGTGCt   <  1:5925238/35‑1 (MQ=255)
                                aaaaGCCAGCCTGTTTCCAGACTGGCTTTTGTGCt   <  1:5095901/35‑1 (MQ=255)
                                 aaagccactcttgcactgcatgcaatcgccccgca  >  1:11595850‑M2/1‑1 (MQ=255)
                                 aaagccactcttgcactgcatgcaatcgccccgca  >  1:9077058‑M2/1‑1 (MQ=255)
                                 aaagccactcttgcactgcatgcaatcgccccgca  >  1:1922624‑M2/1‑1 (MQ=255)
                                 aaagccaatcttgcactgcatgcaatcgccccgca  >  1:10692437‑M2/1‑1 (MQ=255)
                                 aaaGCCAGCCTGTTTCCAGACTGGCTTTTTTGTtt  >  1:3284603/1‑35 (MQ=37)
                                 aaaGCCAGCCTGTTTCCAGACTGGCTTTTGTGCtt  <  1:2822638/35‑1 (MQ=255)
                                 |                                  
AACGCTATTCAGGACGGGTCACACGCGCAAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTT  >  REL606/3875839‑3875906

Base quality scores:  ATCG  < 3 ≤  ATCG  < 16 ≤  ATCG  < 23 ≤  ATCG  < 29 ≤  ATCG  < 33 ≤  ATCG