New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 37463521 (0.890)6 (0.260) 3/54 2.6 18.2% coding (11/192 nt) yaiA hypothetical protein
?REL606 = 3634629 33 (1.080)coding (591/903 nt) dppC dipeptide transporter

TAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCA  >  REL606/3634595‑3634663
                                  |                                  
taaACATCTGACGCATCGCCCCGGCCCCCGCCAcgc                                   >  1:1001993/1‑36 (MQ=255)
taaACATCTGACGCATCGCCCCGGCACCCGCCAcgc                                   >  1:2889853/1‑36 (MQ=255)
taaACATCTGACGCATCGCCCCGGCACCCGCCAcgc                                   >  1:1926850/1‑36 (MQ=255)
    cATCTGACGCATCGCCCCCCCCCCCCCCACGCgcga                               >  1:2983164/1‑36 (MQ=16)
     aTCTGACGCATCGCCCCGGCACCCGCCCCGCGAGAc                              >  1:3388089/1‑36 (MQ=255)
     aTCTGACGCATCGCCCCGGCACCCGCCACGCGAGAc                              >  1:3164654/1‑36 (MQ=255)
       cTGACGCATCGCCCCGGCACCCGCCACGCGAGAcgc                            >  1:962847/1‑36 (MQ=255)
       cTGACGCATCGCCCCGGCACCCGCCACGCGAGAcgc                            >  1:3250521/1‑36 (MQ=255)
       cTGACGCATCGCCCCGGCACCCGCCACGCGAGAcgc                            >  1:2638564/1‑36 (MQ=255)
       cTGACGCATCGCCCCGGCACCCGCCACGCGAGAcgc                            >  1:247212/1‑36 (MQ=255)
       cTGACGCATCGCCCCGGCACCCGCCACGCGAGAcgc                            >  1:1751959/1‑36 (MQ=255)
         gACGCATCGCCCCGGCACCCGCCACGCGAGACGCgg                          >  1:2229674/1‑36 (MQ=255)
          aCGCATCGCCCCGGCACCCGCCCCGCGAGACGCggg                         >  1:1905703/1‑35 (MQ=255)
          aCGCATCGCCCCGGCACCCGCCACGCGAGACGCGGt                         >  1:105003/1‑36 (MQ=255)
          aCGCATCGCCCCGGCACCCGCCACGCGAGACGCGGt                         >  1:1843092/1‑36 (MQ=255)
          aCGCATCGCCCCGGCACCCGCCACGCGAGACGCGGt                         >  1:3741680/1‑36 (MQ=255)
           cGCACCGCCCCGGCCCCCGCCACGCGAGACGCGGTg                        <  1:1954854/36‑1 (MQ=37)
            gCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGa                       >  1:2493384/1‑36 (MQ=255)
            gCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGa                       >  1:2643521/1‑36 (MQ=255)
             cATCGCCCCGGCACCCGCCACGCGAGACGCGGTGAc                      >  1:3237636/1‑36 (MQ=255)
             cATCGCCCCGGCACCCGCCACGCGAGACGCGGCGAc                      >  1:2454821/1‑36 (MQ=255)
              aTCGCCCCGGCACCCGCCACGCGAGACGCTGTGTCg                     >  1:2330613/1‑36 (MQ=25)
               tCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGt                    <  1:721926/36‑1 (MQ=255)
                cGCCCCGGCACCCGCCACGCGAGACGCGGTGACGtc                   >  1:3494959/1‑35 (MQ=255)
                cGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTa                   <  1:1324424/36‑1 (MQ=255)
                 gCCCGGGCCCCCGCCGCGCGAGACGCGGTGACGTaa                  <  1:1781135/36‑1 (MQ=37)
                 cccccGGCCCCCGCCACGCGAGACGCGGTGACGTaa                  <  1:2438558/35‑1 (MQ=255)
                  ccccGGCACCCGCCACGCGAGACGCGGTGACGTAAt                 <  1:2637887/36‑1 (MQ=255)
                  ccccGGCACCCGCCACGCGAGACGCGGTGACGTAAt                 >  1:3165638/1‑36 (MQ=255)
                   cccGGCACCCGCCACGCGAGACGCGGTGACGTAATc                <  1:494347/36‑1 (MQ=255)
                   cccGGAACCCGCCACGCGAGACGCGGTGACGTAATc                <  1:1287237/36‑1 (MQ=255)
                   cccGCCACCCGCCACGggcattgattcgttggcatc                >  1:1580079‑M2/1‑16 (MQ=255)
                   cccCGCACCCGCCACGCGAGACGCGGTGACGTAATc                <  1:413876/36‑1 (MQ=255)
                    ccGGCACCCGCCACGggcattgattcgttggcatcg               >  1:1776442‑M2/1‑15 (MQ=255)
                     cGGCACCCGCCACGggcattgattcgttggcatcgt              >  1:1170775‑M2/1‑14 (MQ=255)
                      ggCACCCGCCACGCGAGACGCGGTGGCGTAATcgcg             >  1:3848712/1‑36 (MQ=255)
                      ggCACCCGCCACGCGAGACGCGGTGACGTAATcgcg             >  1:3404851/1‑36 (MQ=255)
                       gCACCCGCCACGggcattgattcgttggcatcgtca            >  1:75916‑M2/1‑12 (MQ=255)
                       gCACCCGCCACGCGAGACGCGGTGACGTAATCGCgg            <  1:3151852/36‑1 (MQ=255)
                       gCACCCGCCACGCGAGACGCGGTGACGTAATCGCgg            >  1:418185/1‑36 (MQ=255)
                       ccaCCCGCCACGggcattgattcgttggcatcgtca            >  1:2200432‑M2/2‑12 (MQ=255)
                        cACCCGCCACGggcattgattcgttggcatcgtcat           >  1:2833679‑M2/1‑11 (MQ=255)
                         aCCCGCCACGCGAGACGCGGTGACGTAATCGCggct          >  1:2337013/1‑34 (MQ=255)
                          cccGCCACGCGAGACGCGGTGACGTAATCGCGGTTa         <  1:2777403/36‑1 (MQ=255)
                           ccGCCACGCGAGACGCGGTGACGTAATCGCGGttta        >  1:3990657/1‑34 (MQ=255)
                           ccGCCACGCGAGACGCGGTGACGTAATCGCGGTTaa        <  1:3332380/36‑1 (MQ=255)
                           ccGACACGCGAGACGCGGTGACGTAATCGCGGTTaa        <  1:312732/36‑1 (MQ=255)
                             gCCACGCGAGACGCGGTGACGTAATCGCGGTTAACt      >  1:3498486/1‑36 (MQ=255)
                             gCCACGCGAGACGCGGTGACGTAATCGCGGTTAACt      >  1:3078805/1‑36 (MQ=255)
                                 cgcgAGACGCGGTGACGTAATCGCGGTTAACTTccc  >  1:1849966/1‑35 (MQ=255)
                                  |                                  
TAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCA  >  REL606/3634595‑3634663

Base quality scores:  ATCG  < 3 ≤  ATCG  < 6 ≤  ATCG  < 15 ≤  ATCG  < 30 ≤  ATCG  < 40 ≤  ATCG