New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 140096331 (0.680)26 (0.570) 8/56 2.9 43.3% coding (773/1311 nt) abgA predicted peptidase, aminobenzoyl‑glutamate utilization protein
?REL606 = 3875872 37 (0.660)intergenic (‑306/+47) glmU/atpC bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon

GTGCGGGGCGATTGCATGCAGTGCAAGAGTGGCTTGTGCTGCCGCCAACAAGGCATTGTGACCGTCTTC  >  REL606/1400929‑1400997
                                  |                                  
ttgcGGGGCGATTGCATGCCGTGCAAGAGTGGCTT                                    >  1:16474013‑M1/2‑35 (MQ=255)
gtgCGGGGCGATTGCATGCAGTGCAAGAGTGGCTT                                    <  1:14468525‑M1/35‑1 (MQ=255)
gtgCGGGGCGATTGCATGCAGTGCAAGAGTGGCTT                                    <  1:15269445‑M1/35‑1 (MQ=255)
gtgCGGGGCGATTGCATGCAGTGCAAGAGTGGCTT                                    <  1:11665116‑M1/35‑1 (MQ=255)
gtgCGGGGCGATTGCATGCAGTGCAAGAGTGGCTT                                    >  1:8423026‑M1/1‑35 (MQ=255)
gtgCGGGGCGATTGCATGCAGTGCAAGAGTGGCTT                                    <  1:11333305‑M1/35‑1 (MQ=255)
gtgCGGGGCGATTGCATGCAGTGCAAGAGTGCCTT                                    <  1:170835‑M1/35‑1 (MQ=255)
 tgCGGGGCGATTGCATGCAGTGCAAGATTGGCTTt                                   >  1:10692437‑M1/1‑34 (MQ=255)
 tgCGGGGCGATTGCATGCAGTGCAAGAGTGGCTtg                                   <  1:803315/35‑1 (MQ=255)
 tgCGGGGCGATTGCATGCAGTGCAAGAGTGGCTTt                                   >  1:11595850‑M1/1‑34 (MQ=255)
 tgCGGGGCGATTGCATGCAGTGCAAGAGTGGCTTt                                   >  1:9077058‑M1/1‑34 (MQ=255)
 tgCGGGGCGATTGCATGCAGTGCAAGAGTGGCTTt                                   >  1:1922624‑M1/1‑34 (MQ=255)
 tgCGGGGCGATTGCATGCAGTGCAAGAGTGGCTTg                                   <  1:14647301‑M1/35‑2 (MQ=255)
  gCGGGGCGATTGCGTGCAGTGCAAGAGTGGCTTtt                                  >  1:11454288‑M1/1‑33 (MQ=255)
  gCGGGGCGATTGCATGCAGTGCAAGAGTGGCTTtt                                  >  1:6930591‑M1/1‑33 (MQ=255)
   cGGGGCGATTGCATGCAGTGCAAGAGTGGCTtgtg                                 <  1:3690966/35‑1 (MQ=255)
   cGGGGCGATTGCATGCAGTGCAAGAGTGGCTtgtg                                 <  1:760536/35‑1 (MQ=255)
   cGGGGCGATTGCATGCAGTGCAAGAGTGGCTtgtg                                 <  1:7069800/35‑1 (MQ=255)
   cGGGGCGATTGCATGCAGTGCAAGAGTGGCTTttt                                 >  1:2989822‑M1/1‑32 (MQ=255)
   cGGGGCGATTGCATGCAGTGCAAGAGTGGCTTgtg                                 <  1:15057412‑M1/35‑4 (MQ=255)
   cGGGGCGATTGCATGCAGTGCAAGAGTGGCTTgtg                                 <  1:9817179‑M1/35‑4 (MQ=255)
   cGGGGCGATTGCATGCAGTGCAAGAGTGGCTTgtg                                 <  1:13550934‑M1/35‑4 (MQ=255)
    tgggCGATTGCATGCAGTGCAAGAGTGGCTTGtgc                                <  1:7795031/34‑1 (MQ=255)
    ggggCGATTGCATGCAGTGCAAGAGTGGCTTtttt                                >  1:3475527‑M1/1‑31 (MQ=255)
     gggCGATTGCATGCAGTGCAAGAGTGGCTTttttt                               >  1:15218745‑M1/1‑30 (MQ=255)
     gggCGATTGCATGCAGTGCAAGAGTGGCTTttttg                               >  1:15488609‑M1/1‑30 (MQ=255)
     gggCGATTGCATGCAGTGCAAGAGTGGCTTttttc                               >  1:1383869‑M1/1‑30 (MQ=255)
      ggCGATTGCATGCAGTGCAAGAGTGGCTTtttttt                              >  1:6303155‑M1/1‑29 (MQ=255)
      ggCGATTGCATGCAGTGCAAGAGTGGCTTtttttg                              >  1:7316277‑M1/1‑29 (MQ=255)
      ggCGATTGCATGCAGTGCAAGAGTGGCTTtttttg                              >  1:15140260‑M1/1‑29 (MQ=255)
      ggCGATTGCATGCAGTGCAAGAGTGGCTTtttttg                              >  1:12943916‑M1/1‑29 (MQ=255)
      ggCGATTGCATGCAGTGCAAGAGTGGCTTttgttt                              >  1:12004450‑M1/1‑29 (MQ=255)
       gCGATTGCATGCAGTGCAAGAGTGGCTTttttttt                             >  1:4934407‑M1/1‑28 (MQ=255)
       gCGATTGCATGCAGTGCAAGAGTGGCTTttttttt                             >  1:1763987‑M1/1‑28 (MQ=255)
       gCGATTGCATGCAGTGCAAGAGTGGCTTtttttgt                             >  1:14373518‑M1/1‑28 (MQ=255)
        cGATTGCATGCAGTGCAAGAGTGGCTTttttttgc                            >  1:9001674‑M1/1‑27 (MQ=255)
        cGATTGCATGCAGTGCAAGAGTGGCTTttttttgc                            >  1:5064400‑M1/1‑27 (MQ=255)
        cGATTGCATGCAGTGCAAGAGTGGCTTttttttcc                            >  1:10563862‑M1/1‑27 (MQ=255)
        cGATTGCATGCAGTGCAAGAGTGGCTTttgtttgc                            >  1:14248923‑M1/1‑27 (MQ=255)
        cGATTGCAGGCAGTGCAAGAGTGGCTTGTGCTgcc                            <  1:4249894/35‑1 (MQ=255)
          aTTGCATGCAGTGCAAGAGTGGCTTtttttttcgc                          >  1:10032219‑M1/1‑25 (MQ=255)
          aTTGCATGCAGTGCAAGAGTGGCTTttttttgcgc                          >  1:4498298‑M1/1‑25 (MQ=255)
          aTTGCATGCAGTGCAAGAGTGGCTTTTGGTgccgc                          >  1:1669761/1‑35 (MQ=37)
           ttGCATGCAGTGCAAGAGTGGCTTtttttggcgcc                         >  1:11801616‑M1/1‑24 (MQ=255)
           ttGCATGCAGTGCAAGAGTGGCTTGTGCTgccgcc                         <  1:4090151/35‑1 (MQ=255)
           ttGCATGCAGTGCAAGAGTGGCTTGTCCTgccgcc                         <  1:5958058/35‑1 (MQ=255)
            tgcatgcaGTGCAAGAGTGGCTTTTGTTTGCGCca                        >  1:4937216/1‑35 (MQ=19)
             gcatgcaGTGCAAGAGTGGCTTTTGGTGGCGCcaa                       >  1:3474020/1‑35 (MQ=25)
             gcatgcaGTGCAAGAGTGGCTTGTGCTGCCGCcaa                       <  1:250543/35‑1 (MQ=255)
             gcatgcaGTGAAAGAGTGGCTTGTGCTGCCGCcaa                       <  1:981093/35‑1 (MQ=255)
              catgcaGTGCAAGAGTGGCTTTTGTTgccgcccaa                      >  1:3291347/1‑32 (MQ=25)
                tgcaGTGCAAGAGTGGCTTGTGCTGCAGCcaacaa                    <  1:3841254/35‑1 (MQ=255)
                 gcaGTGCAAGAGTGGCTTGTGCTGCCGCCAACAAg                   <  1:6523705/35‑1 (MQ=255)
                 gcaGTGCAAGAGTGGCTTGTGCTGCCGCCAACAAg                   <  1:321509/35‑1 (MQ=255)
                 gcaGTGCAAGAGTGGCTTGTGCTGCCGCCAACAAg                   <  1:3971029/35‑1 (MQ=255)
                   aGTGCAAGAGTGGCTTGTGCTGCCGCCAACAAGGc                 <  1:4861700/35‑1 (MQ=255)
                   aGTGCAAGAGTGGCTTGTGCTGCCGCCAACAAGGc                 <  1:2625131/35‑1 (MQ=255)
                     tGCAAGAGTGGCTTGTGCTGCCGCCAACAAGGCAt               <  1:4345184/35‑1 (MQ=255)
                     tGCAAGAGTGGCTTGGGCTGCCGCCAACAAGGCAt               <  1:6042156/35‑1 (MQ=255)
                      gCAAGAGTGGCTTGTGCTGCCGCCAACAAGGCAtt              <  1:3293921/35‑1 (MQ=255)
                       cAAGAGTGGCTTGTGCTGCCGCCAACAAGGCATtg             <  1:3108120/35‑1 (MQ=255)
                           gctggCTTttttttgcgcgtgtgacccgtcctgaa         >  1:12227834‑M1/3‑8 (MQ=255)
                           agTGGCTTTTGCTGCCGCCAACAAGGCATTGTGAc         <  1:689543/35‑1 (MQ=255)
                           agTGGCTTGTGCTGCCGCCAACAAGGCATTGTGAc         <  1:5838211/35‑1 (MQ=255)
                           agTGGCTTGTGCTGCCGCCAACAAGGCATTGTGAc         <  1:5370065/35‑1 (MQ=255)
                            ttGGCTTGTGCTGCCGCCAACAAGGCATTGTGAcc        <  1:3831571/34‑1 (MQ=255)
                            ctgGCTTttttttgcgcgtgtgacccgtcctgaat        >  1:15870502‑M1/2‑7 (MQ=255)
                             tGGCTTttttttgcgcgtgtgacccgtcctgaata       <  1:5160778‑M1/35‑30 (MQ=255)
                              ggCTTttttttgcgcgtgtgacccgtcctgaatag      <  1:6261655‑M1/35‑31 (MQ=255)
                              ggCTTGTGCTGCCGCCAACAAGGCATAGTGACCGt      <  1:4425581/35‑1 (MQ=255)
                               gCTTttttttgcgcgtgtgacccgtcctgaatagc     >  1:5966978‑M1/1‑4 (MQ=255)
                               gCTTttttttgcgcgtgtgacccgtcctgaatagc     >  1:6299940‑M1/1‑4 (MQ=255)
                               gCTTttttttgcgcgtgtgacccgtcctgaatagc     >  1:11661555‑M1/1‑4 (MQ=255)
                               gCTTttttttgcgcgtgtgacccgtcctgaatact     >  1:4593528‑M1/1‑4 (MQ=255)
                                tgtgtgCTGCCGCCAACAAGGCATTGTGACCGtct    <  1:4614924/33‑1 (MQ=255)
                                cTTttttttgcgcgtgtgacccgtcctgaatagcg    <  1:16072350‑M1/35‑33 (MQ=255)
                                cTTttttttgcgcgtgtgacccgtcctgaatagcg    <  1:11464858‑M1/35‑33 (MQ=255)
                                cTTGTGCTGCCGCCAACAAGGCATTGTGACCGtct    <  1:7521850/35‑1 (MQ=255)
                                cTTGTGCTGCCGCCAACAAGGCATTGTGACCGtct    <  1:4381153/35‑1 (MQ=255)
                                cTTGTGCTGCCGCCAACAAGGCATTGTGACCGtct    <  1:1856805/35‑1 (MQ=255)
                                 ttttttttgcgcgtgtgacccgtcctgaatagcgt   >  1:10846706‑M1/1‑2 (MQ=255)
                                 ttGTGCTGCCGCCAACAAGGCATTGTGACCGtctt   <  1:1152330/35‑1 (MQ=255)
                                 ttGTGCTGCCGCCAACAAGGCATTGTGACCGtctt   >  1:1327100/1‑35 (MQ=255)
                                 ttGTGCTGCCGCCAACAAGGCATTGTGACCGtctt   <  1:2056116/35‑1 (MQ=255)
                                  tttttttgcgcgtgtgacccgtcctgaatagcgtt  <  1:13694690‑M1/35‑35 (MQ=255)
                                  tttttttgcgcgtgtgacccgtcctgaatagcgtt  <  1:13748968‑M1/35‑35 (MQ=255)
                                  tttttttgcgcgtgtgacccgtcctgaatagcgtt  >  1:14939939‑M1/1‑1 (MQ=255)
                                  tttttttgcgcgtgtgacccgtcctgaatagcgtt  >  1:844136‑M1/1‑1 (MQ=255)
                                  tttttttgcgcgtgtgacccgtcctgaatagcgtt  <  1:8680483‑M1/35‑35 (MQ=255)
                                  tttttttgcgcgtgtgacccgtcctgaatagcgtt  >  1:4895652‑M1/1‑1 (MQ=255)
                                  tttttttgcgcgtgtgacccgtcctgaatagcgtt  <  1:3940822‑M1/35‑35 (MQ=255)
                                  tttttttgcgcgtgtgacccgtcctgaatagcgtt  >  1:3770606‑M1/1‑1 (MQ=255)
                                  tttttttgcgcgtgtgacccgtcctgaatagcgtt  >  1:1847608‑M1/1‑1 (MQ=255)
                                  |                                  
GTGCGGGGCGATTGCATGCAGTGCAAGAGTGGCTTGTGCTGCCGCCAACAAGGCATTGTGACCGTCTTC  >  REL606/1400929‑1400997

Base quality scores:  ATCG  < 3 ≤  ATCG  < 14 ≤  ATCG  < 21 ≤  ATCG  < 28 ≤  ATCG  < 33 ≤  ATCG