mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.7 revision b7a44cd89118
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 667 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 133 | 12,758 | 0 | T | C | 78.9% | 648.0 / 166.4 | 322 | intergenic (–/–) | –/– | –/– |
| * | 91 | 8,413 | 0 | T | G | 77.0% | 503.0 / 152.5 | 252 | intergenic (–/–) | –/– | –/– |
| * | 133 | 12,714 | 0 | T | C | 74.9% | 350.3 / 165.7 | 259 | intergenic (–/–) | –/– | –/– |
| * | 87 | 19,478 | 0 | C | T | 73.4% | 258.2 / 109.3 | 158 | intergenic (–/–) | –/– | –/– |
| * | 133 | 2,128 | 0 | T | C | 71.5% | 211.8 / 95.6 | 138 | intergenic (–/–) | –/– | –/– |
| * | 133 | 2,003 | 0 | A | G | 67.7% | 221.7 / 159.1 | 186 | intergenic (–/–) | –/– | –/– |
| * | 59 | 14,384 | 0 | T | C | 67.0% | 111.3 / 72.4 | 91 | intergenic (–/–) | –/– | –/– |
| * | 76 | 21,532 | 0 | T | C | 65.7% | 73.8 / 62.6 | 70 | intergenic (–/–) | –/– | –/– |
| * | 124 | 13,836 | 0 | T | C | 65.2% | 47.7 / 39.2 | 46 | intergenic (–/–) | –/– | –/– |
| * | 62 | 21,225 | 0 | C | T | 64.8% | 132.4 / 123.2 | 128 | intergenic (–/–) | –/– | –/– |
| * | 129 | 8,962 | 0 | C | T | 63.8% | 62.2 / 65.1 | 69 | intergenic (–/–) | –/– | –/– |
| * | 133 | 12,698 | 0 | C | G | 63.5% | 60.2 / 190.9 | 204 | intergenic (–/–) | –/– | –/– |
| * | 77 | 4,199 | 0 | T | C | 63.2% | 38.2 / 90.0 | 95 | intergenic (–/–) | –/– | –/– |
| * | 66 | 13,351 | 0 | A | T | 63.1% | 36.3 / 153.8 | 147 | intergenic (–/–) | –/– | –/– |
| * | 11 | 30,147 | 1 | . | T | 62.5% | 586.2 / inf | 259 | intergenic (–/–) | –/– | –/– |
| * | 62 | 21,231 | 0 | T | G | 61.1% | 140.2 / 141.9 | 126 | intergenic (–/–) | –/– | –/– |
| * | 78 | 1,407 | 0 | A | G | 60.7% | 131.9 / 176.2 | 163 | intergenic (–/–) | –/– | –/– |
| * | 62 | 21,232 | 0 | C | A | 59.7% | 59.1 / 169.7 | 124 | intergenic (–/–) | –/– | –/– |
| * | 41 | 700 | 0 | C | T | 58.5% | 65.6 / 144.7 | 123 | intergenic (–/–) | –/– | –/– |
| * | 31 | 2,073 | 0 | C | T | 58.0% | 51.0 / 117.2 | 100 | intergenic (–/–) | –/– | –/– |
| Marginal new junction evidence (lowest skew 10 of 196 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | 64 | = 23955 | 0 (0.000) | 25 (0.380) | 19/198 | 3.0 | 37.0% | intergenic (–/–) | –/– | –/– |
| ? | 91 | = 8411 | 85 (1.290) | intergenic (–/–) | –/– | –/– | |||||
| * | ? | 168 | = 3298 | 90 (1.350) | 25 (0.440) | 15/172 | 3.0 | 39.2% | intergenic (–/–) | –/– | –/– |
| ? | 3 | = 80500 | 0 (0.000) | intergenic (–/–) | –/– | –/– | |||||
| * | ? | 115 | = 9626 | 77 (1.160) | 30 (0.450) | 21/200 | 3.0 | 43.8% | intergenic (–/–) | –/– | –/– |
| ? | 17 | 1 = | 0 (0.000) | intergenic (–/–) | –/– | –/– | |||||
| * | ? | 146 | = 10176 | 0 (0.000) | 27 (0.440) | 17/186 | 3.1 | 54.5% | intergenic (–/–) | –/– | –/– |
| ? | 54 | 18442 = | 45 (0.730) | intergenic (–/–) | –/– | –/– | |||||
| * | ? | 146 | = 10176 | 0 (0.000) | 9 (0.150) | 6/186 | 3.2 | 100% | intergenic (–/–) | –/– | –/– |
| ? | 82 | = 2357 | 0 (0.000) | intergenic (–/–) | –/– | –/– | |||||
| * | ? | 4 | = 78067 | 0 (0.000) | 20 (0.310) | 16/194 | 3.3 | 29.8% | intergenic (–/–) | –/– | –/– |
| ? | 65 | 7293 = | 94 (1.450) | intergenic (–/–) | –/– | –/– | |||||
| * | ? | 159 | 1 = | 0 (0.000) | 18 (0.290) | 14/184 | 3.3 | 37.1% | intergenic (–/–) | –/– | –/– |
| ? | 9 | 12520 = | 61 (0.990) | intergenic (–/–) | –/– | –/– | |||||
| * | ? | 100 | 1 = | 0 (0.000) | 20 (0.300) | 17/200 | 3.3 | 37.7% | intergenic (–/–) | –/– | –/– |
| ? | 6 | = 55690 | 66 (0.990) | intergenic (–/–) | –/– | –/– | |||||
| * | ? | 10 | 1 = | 0 (0.000) | 23 (0.360) | 16/194 | 3.3 | 100% | intergenic (–/–) | –/– | –/– |
| ? | 4 | = 78064 | 0 (0.000) | intergenic (–/–) | –/– | –/– | |||||
| * | ? | 79 | = 10780 | 60 (0.900) | 27 (0.410) | 16/200 | 3.4 | 47.4% | intergenic (–/–) | –/– | –/– |
| ? | 93 | = 17731 | 0 (0.000) | intergenic (–/–) | –/– | –/– | |||||