Predicted mutation
evidence seq id position mutation annotation gene description
RA 178 1,392 A→G intergenic (–/–)  /  –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*1781,3920AG100.0% 151.0 / NA 43intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (18/25);  total (18/25)

GTAAGTGTTTTCCGTCGACGTTTTATAAGCGGCTTAATGCCGGTGATCGTAAAGGCGCATGCGAGGCGATTCGCTGGTGGATAAAGGACGGTGGACGTGATTGCCGCATTCGTTCAAATAATTGTTACGGTCAGGTTATTCGTCGTGACCAGGAGAGTGCATTAACCTGCTGGGGGATAGAACAG  >  178/1298‑1482
                                                                                               |                                                                                          
gTAAGTGTTTCCCGTCGACGTTTTATAAGCGGCTGAATGCCGGTGATCGTAAGGGTGCATGCGAGGCGATTCGCTGGTGGATAAAAGATGGTGGGCGCGAt                                                                                      <  1:274276/101‑1 (MQ=255)
 tAAGTGTTTCCCGTCGACGTTTTATAAGCGGCTGAATGCCGGTGATCGTAAGGGTGCATGCGAGGCGATTCGCTGGTGGATAAAAGATGGTGGGCGCGAtt                                                                                     <  2:1637059/101‑1 (MQ=255)
  aattgtTTCCCGTCGACGTTTTATAAGCGGCTGAATGCCGGTGATCGTAAGGGTGCAAGCGAGGCGATTCGCTGGTGGATAAAAGATGGTGGGCGCGATTg                                                                                    <  1:603354/98‑1 (MQ=255)
          cccGTCGACGTTTTATAAGCGGCTGAATGCCGGTGATCGTAAGGGTGCATGCGAGGCGATTCGCTGGTGGATAAAAGATGGTGGGCGCGATTGCCGCAtac                                                                            <  2:1433044/100‑3 (MQ=255)
           ccGTCGACGTTTTATAAGCGGCTGAATGCCGGTGATCGTAAGGGTGCATGCGAGGCGATTCGCTGGTGGATAAAAGATGGTGGGCGCGATTGCCGCATACg                                                                           >  1:359684/1‑101 (MQ=255)
             gTCGACGTTTTATAAGCGGCTGAATGCCGGTGATCGTAAGGGTGCATGCGAGGCGATTCGCTGGTGGATAAAAGATGGTGGGCGCGATTGCCGCATACGtt                                                                         >  1:1360889/1‑101 (MQ=255)
             gTCGACGTTTTATAAGCGGCTGAATGCCGGTGATCGTAAGGGTGCATGCGAGGCGATTCGCTGGTGGATAAAAGATGGTGGGCGCGATTGCCGCATACGtt                                                                         >  2:81095/1‑101 (MQ=255)
              tCGACGTTTTATAAGCGGCTGAATGCCGGTGATCGTAAGGGTGCATGCGAGGCGATTCGCTGGTGGATAAAAGATGGTGGGCGCGATTGCCGCATACGTTc                                                                        <  1:1095797/101‑1 (MQ=255)
                  cGTTTTATAAGCGGCTGAATGCCGGTGATCGTAAGGGTGCATGCGAGGCGATTCGCTGGTGGATAAAAGATGGTGGGCGCGATTGCCGCATACGTTCAaat                                                                    <  2:238827/101‑1 (MQ=255)
                   gTTTTATAAGCGGCTGAATGCCGGTGATCGTAAGGGTGCATGCGAGGCGATTCGCTGGTGGATAAAAGATGGTGGGCGCGATTGCCGCATACGTTCAaata                                                                   >  1:1209762/1‑101 (MQ=255)
                   gTTTTATAAGCGGCTGAATGCCGGGGGTCGTAAGGGTGGATGCGAGGGGATGCGCTGGTGGGTTAAAGATGGAGGGAGGGATTGCGGCATACATTCAaata                                                                   >  1:1143699/1‑101 (MQ=255)
                     tttATAAGCGGCTGAATGCCGGTGATCGTAAGGGTGCATGCGAGGCGATTCGCTGGTGGATAAAAGATGGTGGGCGCGATTGCCGCATACGTTCAaataac                                                                 <  1:27810/101‑2 (MQ=255)
                      ttATAAGCGGCTGAATGCCGGTGATCGTAAGGGTGCATGCGAGGCGATTCGCTGGTGGATAAAAGATGGTGGGCGCGATTGCCGCATACGTTCAaataact                                                                <  1:1325795/101‑3 (MQ=255)
                       tataAGCGGCTGAATGCCGGTGATCGTAAGGGTGCATGCGAGGCGATTCGCTGGTGGATAAAAGATGGTGGGCGCGATTGCCGCATACGTTCAAATAACTg                                                               <  2:110419/101‑1 (MQ=255)
                            gCGGCTGAATGCCGGTGATCGTAAGGGTGCATGCGAGGCGATTCGCTGGTGGATAAAAGATGGTGGGCGCGATTGCCGCATACGTTCAAATAACTGCTatg                                                          >  2:892557/1‑99 (MQ=255)
                             cGGCTGAATGCCGGTGATCGTAAGGGTGCATGCGAGGCGATTCGCTGGTGGATAAAAGATGGTGGGCGCGATTGCCGCATACGTTCAAATAACTGCTATgg                                                         >  1:1451271/1‑101 (MQ=255)
                              ggCTGAATGCCGGTGATCGTAAGGGTGCATGCGAGGCGATTCGCTGGTGGATAAAAGATGGTGGGCGCGATTGCCGCATACGTTCAAATAACTGCTATgga                                                        <  2:1119693/101‑2 (MQ=255)
                              ggCTGAATGCCGGTGATCGTAAGGGTGCATGCGAGGCGATTCGCTGGTGGATAAAAGATGGTGGGCGCGATTGCCGCATACGTTCAAATAACTGCTATgga                                                        <  2:1576098/101‑2 (MQ=255)
                               gCTGAATGCCGGTGATCGTAAGGGTGCATGCGAGGCGATTCGCTGGTGGATAAAAGATGGTGGGCGCGATTGCCGCATACGTTCAAATAACTGCTATggac                                                       <  1:1702997/101‑3 (MQ=255)
                                ctgaaTGCCGGTGATCGTAAGGGTGCATGCGAGGCGATTCGCTGGTGGATAAAAGATGGTGGGCGCGATTGCCGCATACGTTCAAATAACTGCTATGGACa                                                      <  2:1126102/98‑1 (MQ=255)
                                 tgaaTGCCGGTGATCGTAAGGGTGCATGCGAGGCGATTCGCTGGTGGATAAAAGATGGTGGGCGCGATTGCCGCATACGTTCAAATAACTGCTATGGACAg                                                     >  2:963025/3‑101 (MQ=255)
                                 tgaaTGCCGGTGATCGTAAGGGTGCATGCGAGGCGATTCGCTGGTGGATAAAAGATGGTGAGCGCGATTGCCGCATACGTTCAAATAACTGCTATGGACAg                                                     >  2:11726/3‑101 (MQ=255)
                                    aTGCCGGTGATCGTAAGGGTGCATGCGAGGCGATTCGCTGGTGGATAAAAGATGGTGGGCGCGATTGCCGCATACGTTCAAATAACTGCTATGGACAGGtt                                                  >  2:311794/1‑101 (MQ=255)
                                      gCCGGTGATCGTAAGGGTGCATGCGAGGCGATTCGCTGGTGGATAAAAGATGGTGGGCGCGATTGCCGCATACGTTCAAATAACTGCTATGGACAGGTTAt                                                <  2:227805/101‑1 (MQ=255)
                                        cGGTGATCGTAAGGGTGCATGCGAGGCGATTCGCTGGTGGATAAAAGATGGTGGGCGCGATTGCCGCATACGTTCAAATAACTGCTATGGACAGGTTATtc                                              <  2:1145004/101‑1 (MQ=255)
                                         ggTGATCGTAAGGGTGCATGCGAGGCGATTCGCTGGTGGATAAAAGATGGTGGGCGCGATTGCCGCATACGTTCAAATAACTGCTATGGACAGGTTATtcg                                             <  1:879083/101‑1 (MQ=255)
                                           tGATCGTAAGGGTGCATGCGAGGCGATTCGCTGGTGGATAAAAGATGGTGGGCGCGATTGCCGCATACGTTCAAATAACTGCTATGGACAGGTTATtcgtc                                           >  2:221854/1‑101 (MQ=255)
                                                gTAAGGGTGCATGCGAGGCGATTCGCTGGTGGATAAAAGATGGTGGGCGCGATTGCCGCATCCATTCAAATAACTGCTACGGACAGGTTATTCGTCGTGAc                                      <  2:1143694/101‑1 (MQ=255)
                                                  aagggtgcATGCGAGCCGATTCGCTGGTGGATAAAAGATGGTGGGCGCGATTGCCGCATACGTTCAAATAACTGCTATGGACAGGTTATTCGTCGTGACCa                                    >  1:209122/7‑101 (MQ=255)
                                                   agggtgcATGCGAGGCGATTCGCTGGTGGATAAAAGATGGTGGGCGCGATTGCCGCATACGTTCAAATAACTGCTATGGACAGGTTATTCGTCGTGACCAg                                   <  1:177155/96‑1 (MQ=255)
                                                          aTGCGAGGCGATTCGTTGGTGGATAAAAGATGGTGGGCGCGATTGCCGCATACGTTCAAATAACTGCTATGGACAGGTTATTCGTCGTGACCAGGaaagcg                            >  2:1466239/1‑99 (MQ=255)
                                                             cGAGGCGATTCGTTGGTGGATAAAAGATGGTGGGCGCGATTGCCGCATACGTTCAAATAACTGCTATGGACAGGTTATTCGTCGTGACCAGGAAAGCGCAt                         <  1:1466245/101‑1 (MQ=255)
                                                               aGGCGATTCGCTGGTGGATAAAAGATGGTGGGCGCGATTGCCGCATACGTTCAAATAACTGCTATGGACAGGTTATTCGTCGTGACCAGGAAAGCGCATTa                       <  2:1589734/101‑1 (MQ=255)
                                                                   gATTCGCTGGTGGATAAAAGATGGTGGGCGCGATTGCCGCATACGTTCAAATAACTGCTATGGACAGGTTATTCGTCGTGACCAGGAAAGCGCATTAGCct                   >  1:272032/1‑101 (MQ=255)
                                                                    aTTCGCTGGTGGATAAAAGATGGTGGGCGCGATTGCCGCATACGTTCAAATAACTGCTATGGACAGGTTATTCGTCGTGACCAGGAAAGCGCATTAGCctg                  >  1:494602/1‑101 (MQ=255)
                                                                     ttCGCTGGTGGATAAAAGATGGTGGGCGCGATTGCCGCATACGTTCAAATAACTGCTATGGACAGGTTATTCGTCGTGACCAGGAAAGCGCATTAGCctgt                 >  2:1495759/1‑100 (MQ=255)
                                                                       cGCTGGTGGATAAAAGATGGTGGGCGCGATTGCCGCATACGTTCAAATAACTGCTATGGACAGGTTATTCGTCGTGACCAGGAAAGCGCATTAGCctgttg               <  1:528466/101‑1 (MQ=255)
                                                                         cTGGTGGATAAAAGGTTGGTGGCGCGCTTTCCGCATACGTTCAAATAACTGGTATGGGCAGGTTTTTCGTCGTGACCAGGAAAGCGCATTAGCCTGTTggg             <  1:414827/101‑1 (MQ=255)
                                                                          tggtggATAAAAGATGGTGGGCGCGATTGCCGCATACGTTCAAATAACTGCTATGGACAGGTTATTCGTCGTGACCAGGAAAGCGCATTAGCCTGTTgggg            >  2:605165/1‑101 (MQ=255)
                                                                            gtggATAAAAGATGGTGGGCGCGATTGCCGCATACGTTCAAATAACTGCTATGGACAGGTTATTCGTCGTGACCAGGAAAGCGCATTAGCCTGTTGGGGGa          >  1:41328/1‑101 (MQ=255)
                                                                             tggATAAAAGATGGTGGGCGCGATTGCCGCATACGTTCAAATAACTGCTATGGACAGGTTATTCGTCGTGACCAGGAAAGCGCATTAGCCTGTTGGGGGAt         <  2:1701175/101‑1 (MQ=255)
                                                                                aTAAAAGATGGTGGGCGCGATTGCCGCATACGTTCAAATAACTGCTATGGACAGGTTATTCGTCGTGACCAGGAAAGCGCATTAGCCTGTTGGGGGATAGa      >  1:1328072/1‑101 (MQ=255)
                                                                                 tAAAAGATGGTGGGCGCGATTGCCGCATACGTTCAAATAACTGCTATGGACAGGTTATTCGTCGTGACCAGGAAAGCGCATTAGCCTGTTGGGGGATAGat     <  1:81095/101‑2 (MQ=255)
                                                                                 tAAAAGATGGTGGGCGCGATTGCCGCATACGTTCAAATAACTGCTATGGACAGGTTATTCGTCGTGACCAGGAAAGCGCATTAGCCTGTTGGGGGATAGat     <  2:1209757/101‑2 (MQ=255)
                                                                                   aaaaGATGGGGGGCGCGATTGCCGCATACGTTCAAATAACTGCTATGGACAGGTTATTCGTCGTGACCAGGAAAGCGCATTAGCCTGTTGGGGGATAGatc    >  2:247443/1‑99 (MQ=255)
                                                                                     aagatggTGGGCGCGATTGCCGCATACGTTCAAATAACTGCTATGGACAGGTTATTCGTCGTGACCAGGAAAGCGCATTAGCCTGTTGGGGGATAGATCAg  <  2:280073/96‑1 (MQ=255)
                                                                                     aagatggTGGGCGCGATTGCCGCATACGTTCAAATAACGGCTATGGACAGGTTATTCGTCGTGACCAGGAAAGCGCATTAGCCTGTTGGGGGATAGATCAg  >  2:994943/6‑101 (MQ=255)
                                                                                               |                                                                                          
GTAAGTGTTTTCCGTCGACGTTTTATAAGCGGCTTAATGCCGGTGATCGTAAAGGCGCATGCGAGGCGATTCGCTGGTGGATAAAGGACGGTGGACGTGATTGCCGCATTCGTTCAAATAATTGTTACGGTCAGGTTATTCGTCGTGACCAGGAGAGTGCATTAACCTGCTGGGGGATAGAACAG  >  178/1298‑1482

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: