Predicted mutation
evidence seq id position mutation annotation gene description
RA 178 315 G→A intergenic (–/–)  /  –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*1783150GA100.0% 165.8 / NA 48intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (21/27);  total (21/27)

GGAGCTGCGCTGGAGTTTTATGAGGCAGCAGCCAGAAGGAGCATCAGACAGGTCTTCCTGGATGTTGCTGCCGGGTTATGTGAAGGGGATGAGCAGTCGCCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGAATGTGTGGATAACCTACAAAGGAAAGCTACCGGGAAGAATTACTGGTTCTCTGAAGACGCCAC  >  178/217‑412
                                                                                                  |                                                                                                 
ggtgccgcgcTGGAGTTTTATGAGGCAGCAGCCAGAAGGAGCATCAGACAGGTCTTCCTGGATGTTGCTGCAGGGTTATGTGAAGGGGATGAGCAGTCAcc                                                                                                 >  1:419451/7‑101 (MQ=255)
 gtgccgcgcTGGAGTTTTATGAGGCAGCAGCCAGAAGGAGCATCAGACAGGTCTTCCTGGATGTTGCTGCAGGGTTATGTGAAGGGGATGAGCAGTCACCg                                                                                                <  1:9039/96‑1 (MQ=255)
       cgcTGGAGTTTTATGAGGCAGCAGCCAGAAGGAGCATCAGACAGGTCTTCCTGGATGTTGCTGCAGGGTTATGTGAAGGGGATGAGCAGTCACCGGAAAAg                                                                                          >  1:1678371/1‑101 (MQ=255)
        gcTGGAGTTTTATGAGGCGGCAGCCAGAAGGAGCATCAGACAGGTCTTCCTGGATGTTGCTGCAGGGTTATGTGAAGGGGATGAGCAGTCACCGGAAAAgc                                                                                         >  1:1532311/1‑101 (MQ=255)
        gcTGGAGTTTTATGAGGCAGCAGCCAGAAGGAGCATCAGACAGGTCTTCCTGGATGTTGCTGCAGGGTTATGTGAAGGGGATGAGCAGTCACCGGAAAAgc                                                                                         >  1:1654066/1‑101 (MQ=255)
           ggAGTTTTATGAGGCAGCAGCCAGAAGGAGCATCAGACAGGTCTTCCTGGATGTTGCTGCAGGGTTATGTGAAGGGGATGAGCAGTCACCGGAAAAGCGcc                                                                                      >  1:181968/1‑101 (MQ=255)
             aGTTTTATGAGGCAGCAGCCAGAAGGAGCATCAGACAGGTCTTCCTGGATGTTGCTGCAGGGTTATGTGAAGGGGATGAGCAGTCACCGGAAAAGCGcccc                                                                                    >  1:463714/1‑101 (MQ=255)
              gTTTTATGAGGCAGCAGCCAGAAGGAGCATCAGACAGGTCTTCCTGGATGTTGCTGCAGGGTTATGTGAAGGGGATGAGCAGTCACCGGAAAAGCGCCCCa                                                                                   >  2:487994/1‑101 (MQ=255)
                   aTGAGGCAGCAGCCAGAAGGAGCATCAGACAGGTCTTCCTGGATGTTGCTGCAGGGTTATGTGAAGGGGATGAGCAGTCACCGGAAAAGCGCCCCATAAtt                                                                              <  2:665571/101‑1 (MQ=255)
                      aGGCAGCAGCCAGAAGGAGCATCAGACAGGTCTTCCTGGATGTTGCTGCAGGGTTATGTGAAGGGGATGAGCAGTCACCGGAAAAGCGCCCCATAATTTTa                                                                           <  1:767069/101‑1 (MQ=255)
                        gcagcaGCCAGAAGGAGCATCAGACAGGTCTTCCTGGATGTTGCTGCAGGGTTATGTGAAGGGGATGAGCAGTCACCGGAAAAGCGCCCCATAATTTTaga                                                                         <  2:611112/101‑1 (MQ=255)
                        gcagcaGCCAGAAGGAGCATCAGACAGGTCTTCCTGGATGTTGCTGCAGGGTTATGTGAAGGGGATGAGCAGTCACCGGAAAAGCGCCCCATAATTTTaga                                                                         <  1:441682/101‑1 (MQ=255)
                         cagcagCCAGAAGGAGCATCAGACAGGTCTTCCTGGATGTTGCTGCAGGGTTATGTGAAGGGGATGAGCAGTCACCGGAAAAGCGCCCCATAATTTTagag                                                                        <  1:186483/101‑1 (MQ=255)
                                 aGAAGGAGCATCAGACAGGTCTTCCTGGATGTTGCTGCAGGGTTATGTGAAGGGGATGAGCAGTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAggg                                                                >  2:910304/1‑99 (MQ=255)
                                 aGAAGGAGCATCAGACAGGTCTTCCTGGATGTTGCTGCAGGGTTATGTGAAGGGGATGAGCAGTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAggg                                                                >  2:1641050/1‑99 (MQ=255)
                                      gAGCATCAGACAGGTCTTCCTGGATGTTGCTGTAGGGTTATGTGAAGGGTATGAGCAGTCACCGGAAAAGCGTCCCATAATTTTAGAGGGGCAGGgtgtgt                                                           <  2:826393/101‑1 (MQ=255)
                                      gAGCATCAGACAGGTCTTCCTGGATGTTGCTGCAGGGTTATGTGAAGGGGATGAGCAGTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGgtgtgt                                                           <  2:160671/101‑1 (MQ=255)
                                         cATCAGACAGGTCTTCCTGGATGTTGCTGCAGGGTTATGTGAAGGGGATGAGCAGTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGa                                                        >  1:938806/1‑101 (MQ=255)
                                          aTCAGACAGGTCTTCCTGGATGTTGCTGCAGGGTTATGTGAAGGGGATGAGCAGTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGAt                                                       <  1:1207472/101‑1 (MQ=255)
                                          aTCAGACAGGTCTTCCTGGATGTTGCTGCAGGGTTATGTGAAGGGGATGAGCAGTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGAt                                                       <  1:1516891/101‑1 (MQ=255)
                                           tCAGACAGGTCTTCCTGGATGTTGCTGCAGGGTTATGTGAAGGGGATGAGCAGTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGATa                                                      <  2:955377/101‑1 (MQ=255)
                                            cAGACAGGTCTTCCTGGATGTTGCTGCAGGGTTATGTGAAGGGGATGAGCAGTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGATaa                                                     <  1:448671/101‑1 (MQ=255)
                                             cagtaattCTTCCTGGATGTTGCTGCAGGGTTATGTGAAGGGGATGAGCAGTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGATAAc                                                    >  2:1457515/8‑101 (MQ=255)
                                             aGACAGGTCTTCCTGGATGTTGCTGCAGGGTTATGTGAAGGGGATGAGCAGTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGATAAc                                                    >  2:640976/1‑101 (MQ=255)
                                              gACAGGTCTTCCTGGATGTTGCTGCAGGGTTATGTGAAGGGGATGAGCAGTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGATAAcc                                                   <  1:1390743/101‑1 (MQ=255)
                                                 aGGTCTTCCTGGATGTTGCTGCAGGGTTATGTGAAGGGGATGAGCAGTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGATAACCTAc                                                <  1:293898/101‑1 (MQ=255)
                                                 aGGTCTTCCTGGATGTTGCTGCAGGGTTATGTGAAGGGGATGAGCAGTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGATAACCTAc                                                >  2:306431/1‑101 (MQ=255)
                                                           ggATGTTGCTGCAGGGTTATGTGAAGGGGATGAGCAGTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGATAACCTACAAAGGaaaac                                      <  1:487999/101‑3 (MQ=255)
                                                           ggATGTTGCTGCAGGGTTATGTGAAGGGGATGAGCAGTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGATAACCTACAAAGGaaaac                                      <  1:910309/101‑3 (MQ=255)
                                                              tGTTGCTGCAGGGTTATGTGAAGGGGATGAGCAGTCACCGGAAAAGCGCCCCATAANTTTAGAGGCGCAGGGTGTGTGGATAACCTACAAAGGAAAACtgc                                   >  1:1300103/1‑99 (MQ=255)
                                                               gTTGCTGCAGGGTTATGTGAAGGGGATGAGCAGTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGATAACCTACAAAGGAAAACTGcc                                  >  2:1490007/1‑101 (MQ=255)
                                                               gTTGCTGCAGGGTTATGTGAAGGGGATGAGCAGTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGATAACCTACAAAGGAAAACTGcc                                  >  1:660141/1‑101 (MQ=255)
                                                               gTTGCTGCAGGGTTATGTGAAGGGGATGAGCAGTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGATAACCTACAAAGGAAAACTGcc                                  <  1:1621215/101‑1 (MQ=255)
                                                                ttGCTGCAGGGTTATGTGAAGGGGATGAGCAGTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGATAACCTACAAAGGAAAACTGCCg                                 <  1:640981/101‑1 (MQ=255)
                                                                ttGCTGCAGGGTTATGTGAAGGGGATGAGCAGTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGATAACCTACAAAGGAAAACTGCCg                                 <  2:181968/101‑1 (MQ=255)
                                                                  gctgcAGGGTTATGTGAAGGGGATGAGCAGTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGATAACCTACAAAGGAAAACTGCCggg                               <  2:1654060/101‑1 (MQ=255)
                                                                    tgcAGGGTTATGTGAAGGGGATGAGCAGTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGATAACCTACAAAGGAAAACTGCCGGgaa                             <  1:196601/101‑1 (MQ=255)
                                                                     tcaggggTATGTGGAGGGGATGAGCAGTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTTTGGATAACCTACAAAGGAAAACTGCCGGgaag                            <  1:1681109/98‑1 (MQ=255)
                                                                        gggTTATGTGAAGGGGATGAGCAGTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGATAACCTACAAAGGAAAACTGCCGGGAAGAAt                         <  2:1208743/101‑1 (MQ=255)
                                                                        gggTTATGTGAAGGGGATGAGCAGTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGATAACCTACAAAGGAAAACTGCCGGGAAGAAt                         <  2:395416/101‑1 (MQ=255)
                                                                             aTGTGAAGGGGATGAGCAGTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGATAACCTACAAAGGAAAACTGCCGGGAAGAATTACTg                    <  1:1457521/101‑1 (MQ=255)
                                                                             aTGTGAAGGGGATGAGCAGTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGATAACCTACAAAGGAAAACTGCCGGGAAGAATTACTg                    <  1:1222814/101‑1 (MQ=255)
                                                                             aTGTGAAGGGGATGAGCAGTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGATAACCTACAAAGGAAAACTGCCGGGAAGAATTACTg                    <  2:1672800/101‑1 (MQ=255)
                                                                                 gAAGGGGATGAGCAGTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGATAACCTACAAAGGAAAACTGCCGGGAAGAATTACTGGTtc                >  1:1557527/1‑101 (MQ=255)
                                                                                    ggggATGAGCAGTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGATAACCTACAAAGGAAAACTGCCGGGAAGAATTACTGGTTcact             <  1:306431/101‑1 (MQ=255)
                                                                                        aTGAGCAGTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGATAACCTACAAAGGAAAACTGCCGGGAAGAATTACTGGTTCACTGAAg         >  2:1324405/1‑101 (MQ=255)
                                                                                        aTGAGCAGTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGATAACCTACAAAGGAAAACTGCCGGGAAGAATTACTGGTTCACTGAAg         >  2:1590335/1‑101 (MQ=255)
                                                                                           aGCAGTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGATAACCTACAAAGGAAAACTGCCGGGAAGAATTACTGGTTCACTGAAGAct      <  1:700969/101‑2 (MQ=255)
                                                                                               gTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGATAACCTACAAAGGAAAACTGCCGGGAAGAATTACTGGTTCACTGAAGACTccgc  >  2:1185738/1‑99 (MQ=255)
                                                                                               gTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGATAACCTACAAAGGAAAACTGCCGGGAAGAATTACTGGTTCACTGAAGACTccgc  >  2:715514/1‑99 (MQ=255)
                                                                                                  |                                                                                                 
GGAGCTGCGCTGGAGTTTTATGAGGCAGCAGCCAGAAGGAGCATCAGACAGGTCTTCCTGGATGTTGCTGCCGGGTTATGTGAAGGGGATGAGCAGTCGCCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGAATGTGTGGATAACCTACAAAGGAAAGCTACCGGGAAGAATTACTGGTTCTCTGAAGACGCCAC  >  178/217‑412

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: