Predicted mutation
evidence seq id position mutation annotation gene description
RA 8 42,959 A→C intergenic (–/–)  /  –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*842,9590AC100.0% 150.5 / NA 43intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base C (18/25);  total (18/25)

TATTTGTCAGTCGGCACGCCTGGTGCAACAACTCGCTCACCAGGGGCATTGTGATGCCGATGCGCTACACGTCTCACTCAACAGTATTATTGATATGAACCCCAGCTCGACGCTGGCGGTTTTTGGCGGTAGCGAAGCCAACCTGCGCGTCGGGCTGGAAACCTTGCTCGGCGTGCTCAATGCCAGCAGTCGC  >  8/42861‑43053
                                                                                                  |                                                                                              
tATTTGTCAGTCGGCACGCCTGGTGCAACAACTCGCTCACCAGGGGCATTGTGATGCCGATGCGCTACACGTCTCACTCAACAGTATTATTGATATGAccc                                                                                              <  1:327877/101‑1 (MQ=255)
tATTTGTCAGTCGGCACGCCTGGTGCAACAACTCGCTCACCAGGGGCATTGTGATGCCGATGCGCTACACGTCTCACTCAACAGTATTATTGATATGAccc                                                                                              <  2:741243/101‑1 (MQ=255)
 aTTTGTCAGTCGGCACGCCTGGTGCAACAACTCGCTCACCAGGGGCATTGTGATGCCGATGCGCTACACGTCTCACTCAACAGTATTATTGATATGAcccc                                                                                             >  2:977912/1‑101 (MQ=255)
   ttGTCAGTCGGCACGCCTGGTGCAACAACTCGCTCACCAGGGGCATTGTGATGCCGATGCGCTACACGTCTCACTCAACAGTATTATTGATATGACCCCCa                                                                                           <  1:1477393/101‑1 (MQ=255)
    tGTCAGTCGGCACGCCTGGTGCAACAACTCGCTCACCAGGGGCATTGTGATGCCGATGCGCTACACGTCTCACTCAACAGTATTATTGATATGACCCCCAg                                                                                          <  1:891134/101‑1 (MQ=255)
    tGTCAGTCGGCACGCCTGGTGCAACAACTCGCTCACCAGGGGCATTGTGATGCCGATGCGCTACACGTCTCACTCAACAGTATTATTGATATGACCCCCAg                                                                                          <  2:125985/101‑1 (MQ=255)
    tGTCAGTCGGCACGCCTGGTGCAACAACTCGCTCACCAGGGGCATTGTGATGCCGATGCGATACACGTCTCACTCAACAGTATTATTGATATGACCCCCAg                                                                                          >  1:249054/1‑101 (MQ=255)
         gTCGGCACGCCTGGTGCAACAACTCGCTCACCAGGGGCATTGTGATGCCGATGCGCTACACGTCTCACTCAACAGTATTATTGATATGACCCCCAGCTCGa                                                                                     >  2:997572/1‑101 (MQ=255)
           cGGCACGCCTGGTGCAACAACTCGCTCACCAGGGGCATTGTGATGCCGATGCGCTACACGTCTCACTCAACAGTATTATTGATATGACCCCCAGCTCGACg                                                                                   <  1:25778/101‑1 (MQ=255)
            ggCACGCCTGGTGCAACAACTCGCTCACCAGGGGCATTGTGATGCCGATGCGCTACACGTCTCACTCAACAGTATTATTGATATGACCCCCAGCTCGACGc                                                                                  >  2:1155732/1‑101 (MQ=255)
               aCGCCTGGTGCAACAACTCGCTCACCAGGGGCATTGTGATGCCGATGCGCTACACGTCTCACTCAACAGTATTATTGATATGACCCCCAGCTCGACGCTgg                                                                               <  2:955541/101‑1 (MQ=255)
                    tGGTGCAACAACTCGGTCACGAGGGGCATTGTGATGCTGATGCGCTACACGTCCCACTCAACAGAATTATGGATATGACCCCCAGCTCGACGCTGGCgggt                                                                          >  2:1408786/1‑99 (MQ=255)
                     ggTGCAACAACTCGCTCACCAGGGGCATTGTGATGCCGATGCGCTACACGTCTCACTCAACAGTATTATTGATATGACCCCCAGCTCGACGCTGGCGGttt                                                                         <  2:65571/101‑1 (MQ=255)
                      gTGCAACAACTCGCTCACCAGGGGCATTGTGATGCCGATGCGCTACACGTCTCACTCAACAGTATTATTGATATGACCCCCAGCTCGACGCTGGCGGtttt                                                                        <  2:1126107/101‑1 (MQ=255)
                       tGCAACACCTCGCTCACCAGGGGCATTGTGATGCCGATGCGCTACACGTCTCACTCAACAGTATTATTGATATGACCCCCAGCTCGACGCTGGCGGttttt                                                                       <  2:132450/101‑1 (MQ=255)
                        gCAACAACTCGCTCACCAGGGGCATTGTGATGCCGATGCGCTACACGTCTCACTCAACAGTATTATTGATATGACCCCCAGCTCGACGCTGGCGGTTTTTg                                                                      <  1:93469/101‑1 (MQ=255)
                        gCAACAACTCGCTCACCAGGGGCATTGTGATGCCGATGCGCTACACGTCTCACTCAACAGTATTATTGATATGACCCCCAGCTCGACGCTGGCGGTTTTTg                                                                      <  1:977917/101‑1 (MQ=255)
                          aacaacTCGCTCACCAGGGGCATTGTGATGCCGATGCGCTACACGTCTCACTCAACAGTATTATTGATATGACCCCCAGCTCGACGCTGGCGGTTTTTGGc                                                                    >  2:1538332/1‑101 (MQ=255)
                          aacaacTCGCTCACCAGGGGCATTGTGATGCCGATGCGCTACACGTCTCACTCAACAGTATTATTGATATGACCCCCAGCTCGACGCTGGCGGTTTTTGGc                                                                    >  1:532944/1‑101 (MQ=255)
                          aacaacTCGCTCACCAGGGACATTGTGATGCCGATGCGCTACACGTCTCACTCAACAGTATTATTGATATGACCCCCAGCTCGACGCTGGCGGTTTTTGGc                                                                    >  1:1488946/1‑101 (MQ=255)
                           acaacTCGCTCACCAGGGGCATTGTGATGCCGATGCGCTACACGTCTCACTCAACAGTATTATTGATATGACCCCCAGCTCGACGCTGGCGGTTTTTGGCg                                                                   <  1:1434309/101‑1 (MQ=255)
                            caacTCGCTCACCAGGGGCATTGTGATGCCGATGCGCTACACGTCTCACTCAACAGTATTATTGATATGACCCCCAGCTCGACGCTGGCGGTTTTTGGCgg                                                                  <  1:288621/101‑1 (MQ=255)
                                tCGCTCACCAGGGGCATTGTGATGCCGATGCGCTACACGTCTCACTCAACAGTATTATTGATATGACCCCCAGCTCGACGCTGGCGGTTTTTGGCGGTAGc                                                              >  1:427395/1‑101 (MQ=255)
                                  gCTCACCAGGGGCATTGTGATGCCGATGCGCTACACGTCTCACTCAACAGTATTATTGATATGACCCCCAGCTCCACGCTGGCGGTTTTTGGCGGTAGCGa                                                            >  2:187642/1‑101 (MQ=255)
                                      cccAGGGGCATTGTGATGCCGATGCGCTACACGTCTCACTCAACAGTATTATTGATATGACCCCCAGCTCGACGCTGGCGGTTTTTGGCGGTAGCGAAGcc                                                        <  1:154957/100‑1 (MQ=255)
                                      aCCAGGGGCATTGTGATGCCGATGCGCTACACGTCTCACTCAACAGTATTATTGATATGACCCCCAGCTCGACGCTGGCGGTTTTTGGCGGTAGCGAAGcc                                                        <  1:894810/101‑1 (MQ=255)
                                       ccAGGGGCATTGTGATGCCGATGCGCTACACGTCTCACTCAACAGTATTATTGATATGCCCCCCAGCTCGACGCTGGCGGTTTTTGGCGGTAGCGAAGCCa                                                       <  1:279748/101‑1 (MQ=255)
                                        cAGGGGCATTGTGATGCCGATGCGCTACACGTCTCACTCAACAGTATTATTGATATGACCCCCAGCTCGACGCTGGCGGTTTTTGGCGGTAGCGAAGCCaa                                                      <  1:179129/101‑1 (MQ=255)
                                        cAGGGGCATTGTGATGCCGATGCGCTACACGTCTCACTCAACAGTATTATTGATATGACCCCCAGCTCGACGCTGGCGGTTTTTGGCGGTAGCGAAGCCaa                                                      <  2:993495/101‑1 (MQ=255)
                                                 tgtgATGCCGATGCGCTACACGTCTCACTCAACAGTATTATTGATATGACCCCCAGCTCGACGCTGGCGGTTTTTGGCGGTAGCGAAGCCAACCTGCGCGt                                             <  1:1606986/101‑1 (MQ=255)
                                                       gctgATGCGCTACACGTCTCACTCAACAGTATTATTGATATGACCCCCAGCTCGACGCTGGCGGTTTTTGGCGGTGGCGAAGCCAACCTGCGCGTCTGGCt                                       <  2:1699905/98‑1 (MQ=255)
                                                        ccGATGCGCTACACGTCTCACTCAACAGTATTATTGATATGACCCCCAGCTCGACGCTGGCGGTTTTTGGCGGTAGCGAAGCCAACCTGCGCGTCGGGCTg                                      <  2:348224/101‑1 (MQ=255)
                                                        ccGATGCGCTACACGTCTCACTCAACAGTATTATTGATATGACCCCCAGCTCGACGCTGGCGGTTTTTGGCGGTAGCGAAGCCAACCTGCGCGTCGGGCTg                                      <  2:159792/101‑1 (MQ=255)
                                                              cgcTACACGTCTCACTCAACAGTATTATTGATATGACCCCCAGCTCGACGCTGGCGGTTTTTGGCGGTAGCGAAGCCAACCTGCGCGTCGGGCTGGAAAcc                                <  2:1489112/101‑1 (MQ=255)
                                                                cTACACGTCTCACTCAACAGTATTATTGATATGACCCCCAGCTCGACGCTGGCGGTTTTTGGCGGTAGCGAAGCCAACCTGCGCGTCGGGCTGGAAACCtt                              <  1:466693/101‑1 (MQ=255)
                                                                cTACACGTCTCACTCAACAGTATTATTGATATGACCCCCAGCTCGACGCTGGCGGTTTTTGGCGGTAGCGAAGCCAACCTGCGCGTCGGGCTGGAAACCtt                              <  1:780558/101‑1 (MQ=255)
                                                                        ctcactcaACAGTATTATTGATATGACCCCCAGCTCGACGCTGGCGGTTTTTGGCGGTAGCGAAGCCAACCTGCGCGTCGGGCTGGAAACCTTGCTCGGCg                      >  1:109013/1‑101 (MQ=255)
                                                                        ctaactcaACATTATTATTGATATGACCCCAAGCTCGAGGCTGGCGGTTTTTGGCGGTAGCGAAGCCAACCTGCGGGTCGGGCTGGAAACCTTGCTCGGCg                      <  2:1231147/98‑1 (MQ=255)
                                                                          cacgcaACAGTATTATTGATATGACCCCCAGCTCGACGCTGGCGGTTTTTGGCGGTAGCGAAGCCAACCTGCGCGTCGGGCTGGAAACCTTGCTCGGCGTg                    <  1:69762/101‑1 (MQ=255)
                                                                           actcaACAGTATTATTGATATGACCCCGAGCTCGACGCTGGCGGGTTTTTGCGGTAGCGAAGCCAACCTGCGCGTCGGGCTGGACACCTTGCTccccgggc                   >  2:953041/1‑94 (MQ=255)
                                                                              caACAGTATTATTGATATGACCCCCAGCTCGACGCTGGCGGTTTTTGGCGGTAGCGAAGCCAACCTGCGCGTCGGGCTGGAAACCTTGCTCGGCGTGCTCa                >  2:395150/1‑101 (MQ=255)
                                                                              caACAGTATTATTGATATGACCCCCAGCTCGACGCTGGCGGTTTTTGGCGGTAGCGAAGCCAACCTGCGCGTCGGGCTGGAAACCTTGCTCGGCGTGCTCa                >  2:843862/1‑101 (MQ=255)
                                                                                 cAGTATTATTGATATGACCCCCAGCTCGACGCTGGCGGTTTTTGGCGGTAGCGAAGCCAACCTGCGCGTCGGGCTGGAAACCTTGCTCGGCGTGCTCAATg             >  2:45468/1‑101 (MQ=255)
                                                                                  aGTATTATTGATATGACCCCCAGCTCGACGCTGGCGGTTTTTGGCGGTAGCGAAGCCAACCTGCGCGTCGGGCTGGAAACCTTGCTCGGCGTGCTCAATGc            >  1:1237880/1‑101 (MQ=255)
                                                                                    tattatTGATATGACCCCCAGCTCGACGCTGGCGGTTTTTGGCGGTAGCGAAGCCAACCTGCGCGTCGGGCTGGAAACCTTGCTCGGCGTGCTCAATGCca          >  2:1337338/1‑101 (MQ=255)
                                                                                     attattGATATGACCCCCAGCTCGACGCTGGCGGTTTTTGGCGGTAGCGAAGCCAACCTGCGCGTCGGGCTGGAAACCTTGCTCGGCGTGCTCAATGCcag         >  2:100007/1‑101 (MQ=255)
                                                                                        attGATATGACCCCCAGCTCGACGCTGGCGGTTTTTGGCGGTAGCGAAGCCAACCTGCGCGTCGGGCTGGAAACCTTGCTCGGCGTGCTCAATGCcagcag      >  1:972262/1‑101 (MQ=255)
                                                                                          tGATATGACCCCCAGCTCGACGCTGGCGGTTTTTGGCGGTAGCGAAGCCAACCTGCGCGTCGGGCTGGAAACCTTGCTCGGCGTGCTCAATGCCAGCAGTc    <  2:1541401/101‑1 (MQ=255)
                                                                                            atatGACCCCCAGCTCGACGCTGGCGGTTTTTGGCGGTAGCGAAGCCAACCTGCGCGTCGGGCTGGAAACCTTGCTCGGCGTGCTCAATGCCAGCAGTCGc  >  2:1335237/1‑101 (MQ=255)
                                                                                                  |                                                                                              
TATTTGTCAGTCGGCACGCCTGGTGCAACAACTCGCTCACCAGGGGCATTGTGATGCCGATGCGCTACACGTCTCACTCAACAGTATTATTGATATGAACCCCAGCTCGACGCTGGCGGTTTTTGGCGGTAGCGAAGCCAACCTGCGCGTCGGGCTGGAAACCTTGCTCGGCGTGCTCAATGCCAGCAGTCGC  >  8/42861‑43053

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: