Predicted mutation
evidence seq id position mutation annotation gene description
RA 56 20,015 G→A intergenic (–/–)  /  –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*5620,0150GA100.0% 195.1 / NA 56intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (24/32);  total (24/32)

CCAGTTGCGAAAGTGAAGAGTAGCCGGTACCAAAATCATCCAGATGTACTTGCGCACCTAGTTGGCTAAATTGTTGAATAACAGACAGTGCCAGTTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCAACATCTATAGGGCAGTATTCAAAATTGAGTTCCTGGAGAACCTGTTTCAGGGCGGTG  >  56/19922‑20109
                                                                                             |                                                                                              
ccAGTTGCGAAAGTGAAGAGTAGCCGGTACCAAAATCATCCAGATGTACTTGCGCACCTAGTTGGCTAAATTGTTGAATAACAGACAGTGCCAATtcatca                                                                                         >  2:578804/1‑101 (MQ=255)
ccAGTTGCGAAAGTGAAGAGTAGCCGGTACCAAAATCATCCAGATGTACTTGCGCACCTAGTTGGCTAAATTGTTGAATAACAGACAGTGCCAATtcatca                                                                                         >  2:95437/1‑101 (MQ=255)
ccAGTTGCGAAAGTGAAGAGTAGCCGGTACCAAAATCATCCAGATGTACTTGCGCACCTAGTTGGCTAAATTGTTGAATAACAGACAGTGCCAATtcatca                                                                                         <  2:73403/101‑1 (MQ=255)
   gTTGCGAAAGTGAAGAGTAGCCGGTACCAAAATCATCCAGATGTACTTGCGCACCTAGTTGGCTAAATTGTTGAATAACAGACAGTGCCAATTCATCATtc                                                                                      >  1:1262909/1‑101 (MQ=255)
      gCGAAAGTGAAGAGTAGCCGGTACCAAAATCATCCAGATGTACTTGCGCACCTAGTTGGCTAAATTGTTGAATAACAGACAGTGCCAATTCATCATTCTCa                                                                                   <  1:1291661/101‑1 (MQ=255)
        gAAAGTGAAGAGTAGCCGGTACCAAAATCATCCAGATGTACTTGCGCACCTAGTTGGCTAAATTGTTGAATAACAGACAGTGCCAATTCATCATTCTCAAt                                                                                 <  1:420774/101‑1 (MQ=255)
        gAAAGTGAAGAGTAGCCGGTACCAAAATCATCCAGATGTACTTGCGCACCTAGTTGGCTAAATTGTTGAATAACAGACAGTGCCAATTCATCATTCTCAAt                                                                                 <  1:1548867/101‑1 (MQ=255)
        caaaGTGAAGAGTAGCCGGTACCAAAATCATCCAGATGTACTTGCGCACCTAGTTGGCTAAATTGTTGAATAACAGACAGTGCCAATTCATCATTCTCAAt                                                                                 <  1:409464/100‑1 (MQ=255)
          aaGTGAAGAGTAGCCGGTACCAAAATCATCCAGATGTACTTGCGCACCTAGTTGGCTAAATTGTTGAATAACAGACAGTGCCAATTCATCATTCTCAATCa                                                                               >  1:191871/1‑101 (MQ=255)
              gAAGAGTAGCCGGTACCAAAATCATCCAGATGTACTTGCGCACCTAGTTGGCTAAATTGTTGAATAACAGACAGTGCCAATTCATCATTCTCAATCAGACa                                                                           <  1:1163073/101‑1 (MQ=255)
                    tAGCCGGTACCAAAATCATCCAGATGTACTTGCGCACCTAGTTGGCTAAATTGTTGAATAACAGACAGTGCCAATTCATCATTCTCAATCAGACAActctc                                                                     <  1:1690955/101‑1 (MQ=255)
                     aGCCGGTACCAAAATCATCCAGATGTACTTGCGCACCTAGTTGGCTAAATTGTTGAATAACAGACAGTGCCAATTCATCATTCTCAATCAGACAActctct                                                                    <  1:585470/101‑1 (MQ=255)
                     aGCCGGTACCAAAATCATCCAGATGTACTTGCGCACCTAGTTGGCTAAATTGTTGAATAACAGACAGTGCCAATTCATCATTCTCAATCAGACAActctct                                                                    <  1:1577011/101‑1 (MQ=255)
                     aGCCGGTACCAAAATCATCCAGATGTACTTGCGCACCTAGTTGGATAAATTGTGGAATAACAGACAGTTCCAATCCATCCTTCCCAATCAGACAAcccttt                                                                    <  2:927726/101‑3 (MQ=255)
                      gCCGGTACCAAAATCATCCAGATGTACTTGCGCACCTAGTTGGCTAAATTGTTGAATAACAGACAGTGCCAATTCATCATTCTCAATCAGACAACTCTCTg                                                                   <  1:1197697/101‑1 (MQ=255)
                        cGGTACCAAAATCATCCAGATGTACTTGCGCACCTAGTTGGCTAAATTGTTGAATAACAGACAGTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTc                                                                 >  1:1640833/1‑101 (MQ=255)
                         ggTACCAAAATCATCCAGATGTACTTGCGCACCTAGTTGGCTAAATTGTTGAATAACAGACAGTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCa                                                                <  2:774869/101‑1 (MQ=255)
                            aCCAAAATCATCCAGATGTACTTGCGCACCTAGTTGGCTAAATTGTTGAATAACAGACAGTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGtt                                                             <  1:871751/101‑1 (MQ=255)
                             ccAAAATCATCCAGATGTACTTGCGCACCTAGTTGGCTAAATTGTTGAATAACAGACAGTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTc                                                            <  1:1392070/101‑1 (MQ=255)
                                aaaTCATCCAGATGTACTTGCGCACCTAGTTGGCTAAATTGTTGAATAACAGACAGTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCAAc                                                         >  2:1579080/1‑101 (MQ=255)
                                aaaTCATCCAGATGTACTTGCGCACCTAGTTGGCTAAATTGTTGAATAACAGACAGTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCAAc                                                         <  1:261702/101‑1 (MQ=255)
                                aaaTCATCCAGATGTACTTGCGCACCTAGTTGGCTAAATTGTTGAATAACAGACAGTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCAAc                                                         <  2:1509587/101‑1 (MQ=255)
                                 aaTCATCCAGATGTACTTGCGCACCTAGTTGGCTAAATTGTTGAATAACAGACAGTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCAACa                                                        >  1:1414736/1‑101 (MQ=255)
                                 aaTCATCCAGATGTACTTGCGCACCTAGTTGGCTAAATTGTTGAATAACAGACAGTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCAACa                                                        <  2:1004197/101‑1 (MQ=255)
                                  atcatcCAGATGTACTTGCGCACCTAGTTGGCTAAATTGTTGAATAACAGACAGTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCAACAt                                                       >  2:1154004/1‑101 (MQ=255)
                                  atcatcCAGATGTACTTGCGCACCTAGTTGGCTAAATTGTTGAATAACAGACAGTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCAACAt                                                       <  1:1540607/101‑1 (MQ=255)
                                  atcatcCAGATGTACTTGCGCACCTAGTTGGCTAAATTGTTGAATAACAGACAGTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCAACAt                                                       <  2:675972/101‑1 (MQ=255)
                                     atcCAGATGTACTTGCGCACCTAGTTGGCTAAATTGTTGAATAACAGACAGTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCAACATCta                                                    >  1:1551349/1‑101 (MQ=255)
                                     atcCAGATGTACTTGCGCACCTAGTTGGCTAAATTGTTGAATAACAGACAGTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCAACATCta                                                    <  1:1550247/101‑1 (MQ=255)
                                      tcCAGATGTACTTGCGCACCTAGTTGGCTAAATTGTTGAATAACAGACAGTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCAACATCtat                                                   >  2:1365671/1‑101 (MQ=255)
                                       ccAGATGTACTTGCGCACCTAGTTGGCTAAATTGTTGAATAACAGACAGTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCAACATCtata                                                  >  1:257178/1‑101 (MQ=255)
                                       ccAGATGTACTTGCGCACCTAGTTGGCTAAATTGTTGAATAACAGACAGTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCAACATCtata                                                  <  1:20166/101‑1 (MQ=255)
                                                cTTGCGCACCTAGTTGGCTAAATTGTTGAATAACAGACAGTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCAACATCTATAGGGCAGTAt                                         <  2:64555/101‑1 (MQ=255)
                                                         cTAGTTGGCTAAATTGTTGAATAACAGACAGTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCAACATCTATAGGGCAGTATTCAAAATTg                                >  1:1352808/1‑101 (MQ=255)
                                                          tAGTTGGCTAAATTGTTGAATAACAGACAGTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCAACATCTATAGGGCAGTATTCAAAATTGa                               >  1:1157370/1‑101 (MQ=255)
                                                           aGTTGGCTAAATTGTTGAATAACAGACAGTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCAACATCTATAGGGCAGTATTCAAAATTGAg                              <  2:1123546/101‑1 (MQ=255)
                                                            gTTGGCTAAATTGTTGAATAACAGACAGTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCAACATCTATAGGGCAGTATTCAAAATTGAGt                             >  2:526092/1‑101 (MQ=255)
                                                            gTTGGCTAAATTGTTGAATAACAGACAGTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCAACATCTATAGGGCAGTATTCAAAATTGAGt                             >  2:1678422/1‑101 (MQ=255)
                                                            gTTGGCTAAATTGTTGAATAACAGACAGTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCAACATCTATAGGGCAGTATTCAAAATTGAGt                             <  2:1183060/101‑1 (MQ=255)
                                                             ttGGCTAAATTGTTGAATAACAGACAGTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCAACATCTATAGGGCAGTATTCAAAATTGAGtt                            <  2:1640827/101‑1 (MQ=255)
                                                             ttGGCTAAATTGTTGAATAACAGACAGTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCAACATCTATAGGGCAGTATTCAAAATTGAGtt                            <  2:186890/101‑1 (MQ=255)
                                                                gCTAAATTGTTGAATAACAGACAGTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCAACATCTATAGGGCAGTATTCAAAATTGAGTTCCt                         <  1:1021765/101‑1 (MQ=255)
                                                                 cTAAATTGTTGAATAACAGACAGTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCAACATCTATAGGGCAGTATTCAAAATTGAGTTCCTg                        >  2:999853/1‑101 (MQ=255)
                                                                 cTAAATTGTTGAATAACAGACAGTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCAACATCTATAGGGCAGTATTCAAAATTGAGTTCCTg                        >  2:44798/1‑101 (MQ=255)
                                                                  tAAATTGTTGAATAACAGACAGTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCAACATCTATAGGGCAGTATTCAAAATTGAGTTCCTgg                       <  1:169165/101‑1 (MQ=255)
                                                                    aaTTGTTGAATAACAGACAGTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCAACATCTATAGGGCAGTATTCAAAATTGAGTTCCTGgag                     >  1:623779/1‑101 (MQ=255)
                                                                       tgttgAATAACAGACAGTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCAACATCTATAGGGCAGTATTCAAAATTGAGTTCCTGGAGAAc                  <  1:1323211/101‑1 (MQ=255)
                                                                        gttgAATAACAGACAGTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCAACATCTATAGGGCAGTATTCAAAATTGAGTTCCTGGAGAAcc                 <  1:1684834/101‑1 (MQ=255)
                                                                         ttgAATAACAGACAGTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCAACATCTATAGGGCAGTATTCAAAATTGAGTTCCTGGAGAACCt                <  1:653229/101‑1 (MQ=255)
                                                                          tgAATAACAGACAGTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCAACATCTATAGGGCAGTATTCAAAATTGAGTTCCTGGAGAACCTg               >  2:942384/1‑101 (MQ=255)
                                                                            aaTAACAGACAGTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCAACATCTATAGGGCAGTATTCAAAATTGAGTTCCTGGAGAACCTGtt             >  1:1031035/1‑101 (MQ=255)
                                                                             aTAACAGACAGTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCAACATCTATAGGGCAGTATTCAAAATTGAGTTCCTGGAGAACTTGttt            >  2:1514952/1‑101 (MQ=255)
                                                                              tAACAGACAGTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCAACATCTATAGGGCAGTATTCAAAATTGAGTTCCTGGAGAACCTGTTTc           >  2:104061/1‑101 (MQ=255)
                                                                                acaggcagGGCCAATTCATCGTTATCAATCAGACAACTCTCTGTCAGTTCAACATCTATAGGGCAGAATTCAAAATTGAGTTCCTGGAGAACCTGTTTCAg         >  2:1083674/1‑101 (MQ=255)
                                                                                 cagacagTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCAACATCTATAGGGCAGTATTCAAAATTGAGTTCCTGGAGAACCTGTTTCAgg        >  1:1166506/1‑101 (MQ=255)
                                                                                 cagacagTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCAACATCTATAGGGCAGTATTCAAAATTGAGTTCCTGGAGAACCTGTTTCAgg        <  1:1678428/101‑1 (MQ=255)
                                                                                     cagTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCAACATCTATAGGGCAGTATTCAAAATTGAGTTCCTGGAGAACCTGTTTCAGGGCgg    >  1:1195783/1‑101 (MQ=255)
                                                                                       gTGCCAATTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCAACATCTATAGGGCAGTATTCAAAATTGAGTTCCTGGAGAACCTGTTTCAGGGCGGTg  <  2:1010596/101‑1 (MQ=255)
                                                                                             |                                                                                              
CCAGTTGCGAAAGTGAAGAGTAGCCGGTACCAAAATCATCCAGATGTACTTGCGCACCTAGTTGGCTAAATTGTTGAATAACAGACAGTGCCAGTTCATCATTCTCAATCAGACAACTCTCTGTCAGTTCAACATCTATAGGGCAGTATTCAAAATTGAGTTCCTGGAGAACCTGTTTCAGGGCGGTG  >  56/19922‑20109

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: