New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? 222 = 14430 (0.000)64 (0.970) 48/198 0.4 100% intergenic (–/–) –/– –/–
?81 9928 = 0 (0.000)intergenic (–/–) –/– –/–

GGCCAGGTGCAGGAATATGACATCAGCACCGCCTCGATGCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGGGACGTCCGCAAGAGTGGGGCCACCATGTCGAGGGGGGATTTTTCTCTGGTGCTGAAGCCTCCTGGGGGATCGCTAACGGTTGGTCGCTATATGGCGGCGCGCTGGGAGATAA  >  81/9832‑10028
                                                                                                |                                                                                                    
aattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGAGTg                                                                                                  <  2:878050‑M2/5‑1 (MQ=255)
 attagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGAGTgg                                                                                                 >  2:804899‑M2/96‑101 (MQ=255)
  ttagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGAGTggg                                                                                                <  1:1061714‑M2/7‑1 (MQ=255)
   tagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacagagnnnnt                                                                                               <  2:7620‑M2/8‑6 (MQ=255)
    agcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGAGTGGGGc                                                                                              <  2:145021‑M2/9‑1 (MQ=255)
     gcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGAGTGGGGcc                                                                                             <  1:956307‑M2/10‑1 (MQ=255)
     gcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGAGTGGGGcc                                                                                             >  2:1597352‑M2/92‑101 (MQ=255)
      cctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGAGTGGGGcca                                                                                            >  2:1638328‑M2/91‑101 (MQ=255)
       ctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGAGTGGGGccac                                                                                           >  1:939168‑M2/90‑101 (MQ=255)
       ctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGAGTGGGGccac                                                                                           >  2:396305‑M2/90‑101 (MQ=255)
       ctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGAGTGGGGccac                                                                                           <  1:729903‑M2/12‑1 (MQ=255)
           aattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGAGTGGGGCCACCATg                                                                                       <  1:1231174‑M2/16‑1 (MQ=255)
             ttaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGAGTGGGGCCACCATGTc                                                                                     <  1:1546565‑M2/18‑1 (MQ=255)
              taaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGAGTGGGGCCACCAtgttc                                                                                    <  2:1023410‑M2/19‑3 (MQ=255)
              taaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGAGTGGGGCCACCATGTCg                                                                                    >  2:357262‑M2/83‑101 (MQ=255)
              taaaaggactgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGAGTGGGGCCACCATGTCg                                                                                    <  2:1250797‑M2/19‑1 (MQ=255)
               aaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGAGTGGGGCCACCATGTCGa                                                                                   >  1:677060‑M2/82‑101 (MQ=255)
               aaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGAGTGGGGCCACCATGTCGa                                                                                   >  1:461595‑M2/82‑101 (MQ=255)
               aaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttgggggcagtacaGAGTGGGGCCACCATGTCGa                                                                                   >  1:1169707‑M2/82‑101 (MQ=255)
                aaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGAGTGGGGCCACCATGTCGAg                                                                                  <  2:460819‑M2/21‑1 (MQ=255)
                aaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGAGTGGGGCCACCATGTCGAg                                                                                  <  1:358497‑M2/21‑1 (MQ=255)
                aaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGAGTGGGGCCACCATGTCGAg                                                                                  <  1:657794‑M2/21‑1 (MQ=255)
                aaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGAGTGGGGCCACCATGTCGAg                                                                                  >  1:1336601‑M2/81‑101 (MQ=255)
                aaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGAGTGGGGCCACCATGTCGAg                                                                                  <  1:786759‑M2/21‑1 (MQ=255)
                      ctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGAGTGGGGCCACCATGTCGAGGGGGGa                                                                            <  1:1459279‑M2/27‑1 (MQ=255)
                      ctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGAGTGGGGCCACCATGTCGAGGGGGGa                                                                            >  2:269013‑M2/75‑101 (MQ=255)
                        gactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGAGTGGGGCCACCATGTCGAGGGGGGAtt                                                                          >  2:475232‑M2/73‑101 (MQ=255)
                         actccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGAGTGGGGCCACCATGTCGAGGGGGGAttt                                                                         <  2:1072394‑M2/30‑1 (MQ=255)
                         actccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGAGTGGGGCCACCATGTCGAGGGGGGAttt                                                                         <  2:560163‑M2/30‑1 (MQ=255)
                            ccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGAGTGGGGCCACCATGTCGAGGGGGGATTTTtc                                                                      >  1:1020949‑M2/69‑101 (MQ=255)
                               attgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtctgtacaGAGTGGGGCCACCATGTCGAGGGGGGATTTTTctct                                                                   >  2:1321588‑M2/66‑101 (MQ=255)
                                  gaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGAGTGGGGCCACCATGTCGAGGGGGGATTTTTCTCTGGt                                                                <  2:1624408‑M2/39‑1 (MQ=255)
                                   aatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGAGTGGGGCCACCATGTCGAGGGGGGATTTTTCTCTGGTg                                                               <  2:1642925‑M2/40‑1 (MQ=255)
                                         ggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGAGTGGGGCCACCATGTCGAGGGGGGATTTTTCTCTGGTGCTGAAg                                                         <  2:23606‑M2/46‑1 (MQ=255)
                                         ggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGAGTGGGGCCACCATGTCGAGGGGGGATTTTTCTCTGGTGCTGAAg                                                         <  1:955126‑M2/46‑1 (MQ=255)
                                          gaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGAGTGGGGCCACCATGTCGAGGGGGGATTTTTCTCTGGTGCTGAAGc                                                        >  2:1382146‑M2/55‑101 (MQ=255)
                                            atcagacctatatgcctcgtgtttaactgtccaactttttggggttagtacaGAGTGGGGCCACCATGTCGAGGGGGGATTTTTCTCTGGTGCTGAAGcct                                                      >  2:1257608‑M2/53‑101 (MQ=255)
                                            atcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGAGTGGGGCCACCATGTCGAGGGGGGATTTTTCTCTGGTGCTGAAGcct                                                      <  1:368154‑M2/49‑1 (MQ=255)
                                            atcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGAGTGGGGCCACCATGTCGAGGGGGGATTTTTCTCTGGTGCTGAAGcct                                                      <  2:414825‑M2/49‑1 (MQ=255)
                                              cagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaGAGTGGGGCCACCATGTCGAGGGGGGATTTTTCTCTGGTGCTGAAGcctcc                                                    <  2:1365954‑M2/51‑1 (MQ=255)
                                                       atgcctcgtgtttaactgtccaactttttggggtcagtacaGAGTGGGGCCACCATGTCGAGGGGGGATTTTTCTCTGGTGCTGAAGCCTCCTGGGGGATc                                           <  1:1620247‑M2/60‑1 (MQ=255)
                                                         gcctcgtgtttaactgtccaactttttggggtcagtacaGAGTGGGGCCACCATGTCGAGGGGGGATTTTTCTCTGGTGCTGAAGCCTCCTGGGGGATCGc                                         >  1:362995‑M2/40‑101 (MQ=255)
                                                          cctcgtgtttaactgtccaactttttggggtcagtacaGAGTGGGGCCACCATGTCGAGGGGGGATTTTTCTCTGGTGCTGAAGCCTCCTGGGGGATCGCt                                        >  2:206268‑M2/39‑101 (MQ=255)
                                                           ctcgtgtttaactgtccaactttttggggtcagtacaGAGTGGGGCCACCATGTCGAGGGGGGATTTTTCTCTGGTGCTGAAGCCTCCTGGGGGATCGCTa                                       >  2:618962‑M2/38‑101 (MQ=255)
                                                              gtgtttaactgtccaactttttggggtcagtacaGAGTGGGGCCACCATGTCGAGGGGGGATTTTTCTCTGGTGCTGAAGCCTCCTGGGGGATCGCTAACg                                    >  1:915288‑M2/35‑101 (MQ=255)
                                                                gtttaactgtccaactttttggggtcagtacaGAGTGGGGCCACCATGTCGAGGGGGGATTTTTCTCTGGTGCTGAAGCCTCCTGGGGGATCGCTAACGGt                                  >  1:1038338‑M2/33‑101 (MQ=255)
                                                                gtttaactgtccaactttttggggtcagtacaGAGTGGGGCCACCATGTCGAGGGGGGATTTTTCTCTGGTGCTGAAGCCTCCTGGGGGATCGCTAACGGt                                  >  1:601737‑M2/33‑101 (MQ=255)
                                                                 tttaactgtccaactttttggggtcagtacaGAGTGGGGCCACCATGTCGAGGGGGGATTTTTCTCTGGTGCTGAAGCCTCCTGGGGGATCGCTAACGGtt                                 >  2:281134‑M2/32‑101 (MQ=255)
                                                                  ttaactgtccaactttttggggtcagtacaGAGTGGGGCCACCATGTCGAGGGGGGATTTTTCTCTGGTGCTGAAGCCTCCTGGGGGATCGCTAACGGTTg                                <  2:844421‑M2/71‑1 (MQ=255)
                                                                  ttaactgtccaactttttggggtcagtacaGAGTGGGGCCACCATGTCGAGGGGGGATTTTTCTCTGGTGCTGAAGCCTCCTGGGGGATCGCTAACGGTTg                                >  2:354076‑M2/31‑101 (MQ=255)
                                                                      ctgtccaactttttggggtcagtacaGAGTGGGGCCACCATGTCGAGGGGGGATTTTTCTCTGGTGCTGAAGCCTCCTGGGGGATCGCTAACGGTTGGTCg                            <  1:597040‑M2/75‑1 (MQ=255)
                                                                         tccaactttttggggtcagtacaGAGTGGGGCCACCATGTCGAGGGGGGATTTTTCTCTGGTGCTGAAGCCTCCTGGGGGATCGCTAACGGTTGGTCGCta                         >  1:1368386‑M2/24‑101 (MQ=255)
                                                                            aactttttggggtcagtacaGAGTGGGGCCACCATGTCGAGGGGGGATTTTTCTCTGGTGCTGAAGCCTCCTGGGGGATCGCTAACGGTTGGTCGCTatat                      <  2:1224653‑M2/81‑1 (MQ=255)
                                                                               tttttggggtcagtacaGAGTGGGGCCACCATGTCGAGGGGGGATTTTTCTCTGGTGCTGAAGCCTCCTGGGGGATCGCTAACGGTTGGTCGCTATATggc                   >  1:55026‑M2/18‑101 (MQ=255)
                                                                               tttttggggtcagtacaGAGTGGGGCCACCATGTCGAGGGGGGATTTTTCTCTGGTGCTGAAGCCTCCTGGGGGATCGCTAACGGTTGGTCGCTATATggc                   <  2:1043435‑M2/84‑1 (MQ=255)
                                                                               tttttggggtcagtacaGAGTGGGGCCACCATGTCGAGGGGGGATTTTTCTCTGGTGCTGAAGCCTCCTGGGGGATCGCTAACGGTTGGTCGCTATATggc                   >  2:1682170‑M2/18‑101 (MQ=255)
                                                                                        ttagtacaGAGTGGGGCCACCATGTCGAGGGGGGATTTTTCTCTGGTGCTGAAGCCTCCTGGGGGATCGCTAACGGTTGGTCGCTATATGGCGGCGCGCTg          <  1:1257613‑M2/93‑1 (MQ=255)
                                                                                        gcagtacaGAGTGGGGCCACCATGTCGAGGGGGGATTTTTCTCTGGTGCTGAAGCCTCCTGGGGGATCGCTAACGGTTGGTCGCTATATGGCGGCGCGCTg          <  2:1623752‑M2/93‑1 (MQ=255)
                                                                                          tgtacaGAGTGGGGCCACCATGTCGAGGGGGGATTTTTCTCTGGTGCTGAAGCCTCCTGGGGGATCGCTAACGGTTGGTCGCTATATGGCGGCGCGCTggg        <  1:1321594‑M2/95‑1 (MQ=255)
                                                                                          agtacaGAGTGGGGCCACCATGTCGAGGGGGGATTTTTCTCTGGTGCTGAAGCCTCCTGGGGGATCGCTAACGGTTGGTCGCTATATGGCGGCGCGCTggg        >  2:611128‑M2/7‑101 (MQ=255)
                                                                                          agtacaGAGTGGGGCCACCATGTCGAGGGGGGATTTTTCTCTGGTGCTGAAGCCTCCTGGGGGATCGCTAACGGTTGGTCGCTATATGGCGGCGCGCTggg        <  1:797318‑M2/95‑1 (MQ=255)
                                                                                             acaGAGTGGGGCCACCATGTCGAGGGGGGATTTTTCTCTGGTGCTGAAGCCTCCTGGGGGATCGCTAACGGTTGGTCGCTATATGGCGGCGCGCTGGgaga     <  2:126480‑M2/98‑1 (MQ=255)
                                                                                             acaGAGTGGGGCCACCATGTCGAGGGGGGATTTTTCTCTGGTGCTGAAGCCTCCTGGGGGATCGCTAACGGTTGGTCGCTATATGGCGGCGCGCTGGgaga     <  1:1577727‑M2/98‑1 (MQ=255)
                                                                                              caGAGTGGGGCCACCATGTCGAGGGGGGATTTTTCTCTGGTGCTGAAGCCTCCTGGGGGATCGCTAACGGTTGGTCGCTATATGGCGGCGCGCTGGGAGAt    <  1:649133‑M2/99‑1 (MQ=255)
                                                                                                gagTGGGGCCACCATGTCGAGGGGGGATTTTTCTCTGGTGCTGAAGCCTCCTGGGGGATCGCTAACGGTTGGTCGCTATATGGCGGCGCGCTGGGAGATaa  <  2:162335/101‑1 (MQ=255)
                                                                                                gagTGGGGCCACCATGTCGAGGGGGGATTTTTCTCTGGTGCTGAAGCCTCCTGGGGGATCGCTAACGGTTGGTCGCTATATGGCGGCGCGCTGGGAGATaa  >  2:1501452/1‑101 (MQ=255)
                                                                                                |                                                                                                    
GGCCAGGTGCAGGAATATGACATCAGCACCGCCTCGATGCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGGGACGTCCGCAAGAGTGGGGCCACCATGTCGAGGGGGGATTTTTCTCTGGTGCTGAAGCCTCCTGGGGGATCGCTAACGGTTGGTCGCTATATGGCGGCGCGCTGGGAGATAA  >  81/9832‑10028

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.