New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? 222 1 =0 (0.000)70 (1.050) 53/200 0.2 100% intergenic (–/–) –/– –/–
?48 1 = 0 (0.000)intergenic (–/–) –/– –/–

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAACTGCTGGAGCGTGTCGGGCTTTCTGCTCACGCCAATAAGTTTCCGGCGCAGCTTTCCGGCGGTCAGCAGCAGCGTGTGGCAATCGCTCGCGCGTTGT  >  48/1‑100
                                                                                                 |                                                                                                   
tgattcacgacttcaaggcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaAAAc                                                                                                  <  2:1162092‑M2/4‑1 (MQ=255)
    tcacgacttcaaggcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaAAActgct                                                                                              <  1:1671001‑M2/8‑1 (MQ=255)
      acgacttcaaggcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaAAACTGCTgg                                                                                            <  2:1505336‑M2/10‑1 (MQ=255)
        gacttcaaggcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaAAACTGCTGGAg                                                                                          >  2:1263009‑M2/90‑101 (MQ=255)
           ttcaaggcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaAAACTGCTGGAGCgt                                                                                       >  2:1306067‑M2/87‑101 (MQ=255)
               aggcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaAAACTGCTGGAGCGTGTCg                                                                                   <  2:1283846‑M2/19‑1 (MQ=255)
               aggcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaAAACTGCTGGAGCGTGTCg                                                                                   <  2:393685‑M2/19‑1 (MQ=255)
                     ttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaAAACTGCTGGAGCGTGTCGGGCttt                                                                             <  1:428650‑M2/25‑1 (MQ=255)
                     ttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaAAACTGCTGGAGCGTGTCGGGCttt                                                                             >  1:369969‑M2/77‑101 (MQ=255)
                      tttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaAAACTGCTGGAGCGTGTCGGGCTTTc                                                                            >  1:1540970‑M2/76‑101 (MQ=255)
                       ttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaAAACTGCTGGAGCGTGTCGGGCTTTCt                                                                           >  1:465003‑M2/75‑101 (MQ=255)
                       ttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaAAACTGCTGGAGCGTGTCGGGCTTTCt                                                                           <  1:167507‑M2/27‑1 (MQ=255)
                       ttcaaaaggggattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaAAACTGCTGGAGCGTGTCGGGCTTTCt                                                                           >  2:416815‑M2/75‑101 (MQ=255)
                         caaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaAAACTGCTGGAGCGTGTCGGGCTTTCTGc                                                                         >  1:314818‑M2/73‑101 (MQ=255)
                           aaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaAAACTGCTGGAGCGTGTCGGGCTTTCTGCTc                                                                       >  1:246135‑M2/71‑101 (MQ=255)
                            aagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaAAACTGCTGGAGCGTGTCGGGCTTTCTGCTCa                                                                      <  1:860287‑M2/32‑1 (MQ=255)
                            aagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaAAACTGCTGGAGCGGGTCGGGCTTTCTGCTCa                                                                      >  2:1664772‑M2/70‑101 (MQ=255)
                             agggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaAAACTGCTGGAGCGTGTCGGGCTTTCTGCTCAc                                                                     <  1:367480‑M2/33‑1 (MQ=255)
                               ggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaAAACTGCTGGAGCGTGTCGGGCTTTCTGCTCACGc                                                                   >  1:201948‑M2/67‑101 (MQ=255)
                                 tattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaAAACTGCTGGAGCGTGTCGGGCTTTCTGCTCACGCCa                                                                 >  2:545477‑M2/65‑101 (MQ=255)
                                       ggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaAAACTGCTGGAGCGTGTCGGGCTTTCTGCTCACGCCAATAAGt                                                           >  1:625340‑M2/59‑101 (MQ=255)
                                         ctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaAAACTGCTGGAGCGTGTCGGGCTTTCTGCTCACGCCAATAAGttt                                                         >  2:364136‑M2/57‑101 (MQ=255)
                                         ctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaAAACTGCTGGAGCGTGTCGGGCTTTCTGCTCACGCCAATAAGttt                                                         >  1:1307463‑M2/57‑101 (MQ=255)
                                         ctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaAAACTGCTGGAGCGTGTCGGGCTTTCTGCTCACGCCAATAAGttt                                                         <  1:1533617‑M2/45‑1 (MQ=255)
                                         ctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaAAACTGCTGGAGCGTGTCGGGCTTTCTGCTCACGCCAATAAGttt                                                         >  1:1678766‑M2/57‑101 (MQ=255)
                                         ctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaAAACTGCTGGAGCGTGTCGGGCTTTCTGCTCACGCCAATAAGttt                                                         >  1:688021‑M2/57‑101 (MQ=255)
                                         ctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaAAACTGCTGGAGAGTGTCGGGCTTTCTGATCACGCCAATAAGttt                                                         >  2:1587903‑M2/57‑101 (MQ=255)
                                          tttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaAAACTGCTGGAGCGTGTCGGGCTTTCTGCTCACGCCAATAAGTTTc                                                        >  1:941820‑M2/56‑101 (MQ=255)
                                           ttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaAAACTGCTGGAGCGTGTCGGGCTTTCTGCTCACGCCAATAAGTTTcc                                                       >  1:438284‑M2/55‑101 (MQ=255)
                                            tgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaAAACTGCTGGAGCGTGTCGGGCTTTCTGCTCACGCCAATAAGTTTCCg                                                      <  2:677009‑M2/48‑1 (MQ=255)
                                              acatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaAAACTGCTGGAGCGTGTCGGGCTTTCTGCTCCCGCCAATAAGTTTCCGgc                                                    >  1:826489‑M2/52‑101 (MQ=255)
                                                atattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaAAACTGCTGGAGCGTGTCGGGCTTTCTGCTCACGCCAATAAGTTTCCGgcgc                                                  >  2:216810‑M2/50‑101 (MQ=255)
                                                atattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaAAACTGCTGGAGCGTGTCGGGCTTTCTGCTCACGCCAATAAGTTTCCGgcgc                                                  >  1:1266130‑M2/50‑101 (MQ=255)
                                                atattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaAAACTGCTGGAGCGTGTCGGGCTTTCTGCTCACGCCAATAAGTTTCCGgcgc                                                  >  2:1611547‑M2/50‑101 (MQ=255)
                                                atattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaAAACTGCTGGAGCGTGTCGGGCTTTCTGCTCACGCCAATAAGTTTCCGgcgc                                                  >  2:564884‑M2/50‑101 (MQ=255)
                                                   ttaggggctattccatttcatcgtccaacaaaatgggtgcagtacaAAACTGCTGGAGCGTGTCGGGCTTTCTGCTCACGCCAATAAGTTTCCGGCGCAGc                                               <  1:920410‑M2/55‑1 (MQ=255)
                                                   tccgatcttattccatttcatcgtccaacaaaatgggtgcagtacaAAACTGCTGGAGCGTGTCGGGCTTTCTGCTCACGCCAATAAGTTTCCGGCGCAGc                                               <  2:854812‑M2/55‑1 (MQ=255)
                                                     aggggctattccatttcatcgtccaacaaaatgggtgcagtacaAAACTGCTGGAGCGTGTCGGGCTTTCTGCTCACGCCAATAAGTTTCCGGCGCAGCtt                                             <  2:941815‑M2/57‑1 (MQ=255)
                                                      ggggctattccatttcatcgtccaacaaaatgggtgcagtacaAAACTGCTGGAGCGTGTCGGGCTTTCTGCTCACGCCAATAAGTTTCCGGCGCAGCttt                                            >  1:1067627‑M2/44‑101 (MQ=255)
                                                         gctattccatttcatcgtccaacaaaatgggtgcagtacaAAACTGCTGGAGCGTGTCGGGCTTTCTGCTCACGCCAATAAGTTTCCGGCGCAGCTTTCcg                                         <  1:1611553‑M2/61‑1 (MQ=255)
                                                           tattccatttcatcgtccaacaaaatgggtgcagtacaAAACTGCTGGAGCGTGTCGGGCTTTCTGCTCACGCCAATAAGTTTCcggcgcagcagatcgga                                       >  1:854817‑M2/39‑93 (MQ=255)
                                                           tattccatttcatcgtccaacaaaatgggtgcagtacaAAACTGCTGGAGCGTGTCGGGCTTTCTGCTCACGCCAATAAGTTTCCGGCGCAGCTTTCcggc                                       >  1:1276795‑M2/39‑101 (MQ=255)
                                                            attccatttcatcgtccaacaaaatgggtgcagtacaAAACTGCTGGAGCGTGTCGGGTTTTCTGCTCACGCCAATAAGTTTCCGGCGCAGCTTTCcggcg                                      >  2:1265214‑M2/38‑101 (MQ=255)
                                                             ttccatttcatcgtccaacaaaatgggtgcagtacaAAACTGCTGGAGCGTGTCGGGCTTTCTGCTCACGCCAATAAGTTTCCGGCGCAGCTTTCcggcgg                                     >  1:725608‑M2/37‑101 (MQ=255)
                                                               ccatttcatcgtccaacaaaatgggtgcagtacaAAACTGCTGGAGCGTGTCGGGCTTTCTGCTCACGCCAATAAGTTTCCGGCGCAGCTTTCCGGCGGTc                                   <  1:1306073‑M2/67‑1 (MQ=255)
                                                                    tcatcgtccaacaaaatgggtgcagtacaAAACTGCTGGAGCGTGTCGGGCTTTCTGCTCACGCCAATAAGTTTCCGGCGCAGCTTTCCGGCGGTcagcag                              <  2:1106021‑M2/72‑1 (MQ=255)
                                                                    tcatcgtccaacaaaatgggtgcagtacaAAACTGCTGGAGCGTGTCGGGCTTTCTGCTCACGCCAATAAGTTTCCGGCGCAGCTTTCCGGCGGTcagcag                              <  2:1280557‑M2/72‑1 (MQ=255)
                                                                      atcgtccaacaaaatgggtgcagtacaAAACTGCTGGAGCGTGTCGGGCTTTCTGCTCACGCCAATAAGTTTCCGGCGCAGCTTTCCGGCGGTcagcagca                            <  2:466245‑M2/74‑1 (MQ=255)
                                                                      atcgtccaacaaaatgggtgcagtacaAAACTGCTGGAGCGTGTCGGGCTTTCTGCTCACGCCAATAAGTTTCCGGCGCAGCTTTCCGGCGGTcagcagca                            >  2:1354737‑M2/28‑101 (MQ=255)
                                                                      atcgtccaacaaaatgggtgcagtacaAAACTGCTGGAGCGTGTCGGGCTTTCTGCTCACGCCAATAAGTTTCCGGCGCAGCTTTCCGGCGGTcagcagca                            >  1:443877‑M2/28‑101 (MQ=255)
                                                                      atcgtccaacaaaatgggtgcagtacaAAACTGCTGGAGCGTGTCGGGCTTTCTGCTCACGCCAATAAGTTTCCGGCGCAGCTTTCCGGCGGTcagcagca                            >  1:472345‑M2/28‑101 (MQ=255)
                                                                         gtccaacaaaatgggtgcagtacaAAACTGCTGGAGCGTGTCGGGCTTTCTGCTCACGCCAATAAGTTTCCGGCGCAGCTTTCCGGCGGTCAGCAGCAGCg                         >  2:508385‑M2/25‑101 (MQ=255)
                                                                          tccaacaaaatgggtgcagtacaAAACTGCTGGAGCGTGTCGGGCTTTCTGCTCACGCCAATAAGTTTCCGGCGCAGCTTTCCGGCGGTCAGCAGCAGCgt                        >  2:753751‑M2/24‑101 (MQ=255)
                                                                            caacaaaatgggtgcagtacaAAACTGCTGGAGCGTGTCGGGCTTTCTGCTCACGCCAATAAGTTTCCGGCGCAGCTTTCCGGCGGTCAGCAGCAGCgtgt                      <  1:692362‑M2/80‑1 (MQ=255)
                                                                               caaaatgggtgcagtacaAAACTGCTGGAGCGTGTCGGGCTTTCTGCTCACGCCAATAAGTTTCCGGCGCAGCTTTCCGGCGGTCAGCAGCAGCGTGTGGc                   >  1:1194407‑M2/19‑101 (MQ=255)
                                                                                 aaatgggtgcagtacaAAACTGCTGGAGCGTGTCGGGCTTTCTGCTCACGCCAATAAGTTTCCGGCGCAGCTTTCCGGCGGTCAGCAGCAGCGTGTGGCaa                 <  1:935685‑M2/85‑1 (MQ=255)
                                                                                   atgggtgcagtacaAAACTGCTGGAGCGTGTCGGGCTTTCTGCTCACGCCAATAAGTTTCCGGCGCAGCTTTCCGGCGGTCAGCAGCAGCGTGTGGCAAtc               >  2:715216‑M2/15‑101 (MQ=255)
                                                                                    tgggtgcagtacaAAACTGCTGGAGCGTGTCGGGCTTTCTGCTCACGCCAATAAGTTTCCGGCGCAGCTTTCCGGCGGTCAGCAGCAGCGTGTGGCAAtcg              <  1:914156‑M2/88‑1 (MQ=255)
                                                                                    tgggtgcagtacaAAACTGCTGGAGCGTGTCGGGCTTTCTGCTCACGCCAATAAGTTTCCGGCGCAGCTTTCCGGCGGTCAGCAGCAGCGTGTGGCAAtcg              >  2:1448766‑M2/14‑101 (MQ=255)
                                                                                    tgggtgcagtacaAAACTGCTGGAGCGTGTCGGGCTTTCTGCTCACGCCAATAAGTTTCCGGCGCAGCTTTCCGGCGGTCAGCAGCAGCGTGTGGCAAtcg              <  2:1057456‑M2/88‑1 (MQ=255)
                                                                                     gggtgcagtacaAAACTGCTGGAGCGTGTCGGGCTTTCTGCTCACGCCAATAAGTTTCCGGCGCAGCTTTCCGGCGGTCAGCAGCAGCGTGTGGCAAtcgc             >  1:554443‑M2/13‑101 (MQ=255)
                                                                                      ggtgcagtacaAAACTGCTGGAGCGTGTCGGGCTTTCTGCTCACGCCAATAAGTTTCCGGCGCAGCTTTCCGGCGGTCAGCAGCAGCGTGTGGCAAtcgct            <  2:496726‑M2/90‑1 (MQ=255)
                                                                                      ggtgcagtacaAAACTGCTGGAGCGTGTCGGGCTTTCTGCTCACGCCAATAAGTTTCCGGCGCAGCTTTCCGGCGGTCAGCAGCAGCGTGTGGCAAtcgct            <  2:201948‑M2/90‑1 (MQ=255)
                                                                                         gcagtacaAAACTGCTGGAGCGTGTCGGGTTTTCTGCTCACGCCAATAAGTTTCCGGCGCAGCTTTCCGGCGGTCAGCAGCAGCGTGTGGCAAtcgctcgc         <  1:1265219‑M2/93‑1 (MQ=255)
                                                                                          cagtacaAAACTGCTGGAGCGTGTCGGGCTTTCTGCTCACGCCAATAAGTTTCCGGCGCAGCTTTCCGGCGGTCAGCAGCAGCGTGTGGCAATCGCTcgcg        >  2:1051914‑M2/8‑101 (MQ=255)
                                                                                            gtacaAAACTGCTGGATCGTGTCGGGCTTTCTTCTCACGCCAATAAGTTTCCGGCGCAGCTTTCCGGCGGTCAGCAGCAGCGTGTGGCAATCGCTcgcgcg      >  2:1319044‑M2/6‑101 (MQ=255)
                                                                                            gtacaAAACTGCTGGAGCGTGTCGGGCTTTCTGCTCACGCCAATAAGTTTCCGGCGCAGCTTTCCGGCGCTCAGCAGCAGCGTGCGTCAATCGCTcgcgcg      >  2:1623880‑M2/6‑101 (MQ=255)
                                                                                              acaAAACTGCTGGAGCGTGTCGGGCTTTCTGCTCACGCCAATAAGTTTCCGGCGCAGCTTTCCGGCGGTCAGCAGCAGCGTGTGGCAATCGCTCGCGCGtt    >  2:1157039‑M2/4‑101 (MQ=255)
                                                                                               caAAACTGCTGGAGCGTGTCGGGCTTTCTGCTCACGCCAATAAGTTTCCGGCGCAGCTTTCCGGCGGTCAGCAGCAGCGTGTGGCAATCGCTCGCGCGTtg   <  1:564889‑M2/99‑1 (MQ=255)
                                                                                                aAAAATGCTGTGGCGTGTCGGGCTTTCTGCTCACGCCAATAAGTTTCCGGCGCAGCTTTCCCGGGGTCAGCAGCAGCGTGTGGCAATCGCTCGCGCGTtgt  >  2:464419‑M2/2‑101 (MQ=255)
                                                                                                 |                                                                                                   
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAACTGCTGGAGCGTGTCGGGCTTTCTGCTCACGCCAATAAGTTTCCGGCGCAGCTTTCCGGCGGTCAGCAGCAGCGTGTGGCAATCGCTCGCGCGTTGT  >  48/1‑100

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.