New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? 200 1 =0 (0.000)26 (0.530)
+ATCGTCGGTACTGGCGGTGACGGCAGC
22/146 0.7 100% intergenic (–/–) –/– –/–
?46 = 30710 0 (0.000)intergenic (–/–) –/– –/–

GAACCAGATTTACTGGAGACGCTACGGTTGCCGTGTTTCGCCACTTTCAGCCCACAGGCCGCGGCGACAAACGCACTGGCGGTAGAAATATTGATACTGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  46/30610‑30710
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gAACCAGATTTACTGGAGACGCTACGGTTGCCGTGTTTCGCCACTTTCAGCCCACAGGCCGCGGCGACAAACGCACTGGCGGTAGAAATATTGATACTGtt                                                                                                      >  1:284928/1‑101 (MQ=255)
  aCCAGATTTACTGGAGACGCTACGGTTGCCGTGTTTCGCCACTTTCAGCCCACAGGCCGCGGCGACAAACGCACTGGCGGTAGAAATATTGATACTGTTgc                                                                                                    <  1:526298‑M2/101‑3 (MQ=255)
    cAGATTTACTGGAGACGCTACGGTTGCCGTGTTTCGCCACTTTCAGCCCACAGGCCGCGGCGACAAACGCACTGGCGGTAGAAATATTGATACTGTTgctg                                                                                                  >  2:972267‑M2/1‑97 (MQ=255)
          tACTGGAGACGCTACGGTTGCCGTGTTTCGCCACTTTCAGCCCACAGGCCGCGGCGACAAACGCACTGGCGGTAGAAATATTGATACTGTTgctgccgtca                                                                                            >  1:1691425‑M2/1‑91 (MQ=255)
            cTGGAGACGCTACGGTTGCCGTGTTTCGCCACTTTCAGCCCACAGGCCGCGGCGACAAACGCACTGGCGGTAGAAATATTGATACTGTTgctgccgtcacc                                                                                          <  2:282750‑M2/101‑13 (MQ=255)
                 gaCGCTACGGTTGCCGTGTTTCGCCACTTTCAGCCCACAGGCCGCGGCGACAAACGCACTGGCGGTAGAAATATTGATACTGTTgctgccgtcaccgccag                                                                                     <  1:1237388‑M2/101‑18 (MQ=255)
                  aCGCTATGGTTGCCGTGTTTCGCCCCTTTCAGCCCACAGGCCGCGGCGACAAACGCACTGGCGGTAGAAATATTGATACTGTTgctgccgtcaccgccagt                                                                                    >  2:1361591‑M2/1‑83 (MQ=255)
                   cGCTACGGTTGCCGTGTTTCGCCACTTTCAGCCCACAGGCCGCGGCGACAAACGCACTGGCGGTAGAAATATTGATACTGTTgctgccgtcaccgccagta                                                                                   >  2:1131965‑M2/1‑82 (MQ=255)
                   cGCTACGGTTGCCGTGTTTCGCCACTTTCAGCCCACAGGCCGCGGCGACAAACGCACTGGCGGTAGAAATATTGATACTGTTgctgccgtcaccgccagta                                                                                   <  1:1519034‑M2/101‑20 (MQ=255)
                    gCTACGGTTGCCGTGTTTCGCCACTTTCAGCCCACAGGCCGCGGCGACAAACGCACTGGCGGTAGAAATATTGATACTGTTgctgccgtcaccgccagtac                                                                                  <  1:1035495‑M2/101‑21 (MQ=255)
                        cGGTTGCCGTGTTTCGCCACTTTCAGCCCACAGGCCGCGGCGACAAACGCACTGGCGGTAGAAATATTGATACTGTTgctgccgtcaccgccagtaccgac                                                                              >  1:1288409‑M2/1‑77 (MQ=255)
                             gCCGTGTTTCGCCACTTTCAGCCCACAGGCCGCGGCGACAAACGCACTGGCGGTAGAAATATTGATACTGTTgctgccgtcaccgccagtaccgacgatat                                                                         >  1:1466051‑M2/1‑72 (MQ=255)
                                      cGCCACTTTCAGCCCACAGGCCGCGGCGACAAACGCACTGGCGGTAGAAATATTGATACTGTTgctgccgtcaccgccagtaccgacgatatcagcaaaca                                                                >  1:429285‑M2/1‑63 (MQ=255)
                                      cGCCACTTTCAGCCCACAGGCCGCGGCGACAAACGCACTGGCGGTAGAAATATTGATACTGTTgctgccgtcaccgccagtaccgacgatatcagcaaaca                                                                <  1:1637392‑M2/101‑39 (MQ=255)
                                            tttCAGCCCACAGGCCGCGGCGACAAACGCACTGGCGGTAGAAATATTGATACTGTTgctgccgtcaccgccagtaccgacgatatcagcaaacagataat                                                          >  1:973068‑M2/1‑57 (MQ=255)
                                            tttCAGCCCACAGGCCGCGGCGACAAACGCACTGGCGGTAGAAATATTGATACTGTTgctgccgtcaccgccagtaccgacgatatcagcaaacagataat                                                          >  2:1462370‑M2/1‑57 (MQ=255)
                                             ttCAGCCCACAGGCCGCGGCGACAAACGCACTGGCGGTAGAAATATTGATACTGTTgctgccgtcaccgccagtaccgacgatatcagcaaacagataatc                                                         >  2:136073‑M2/1‑56 (MQ=255)
                                                      caGGCCGCGGCGACAAACGCACTGGCGGTAGAAATATTGATACTGTTgctgccgtcaccgccagtaccgacgatatcagcaaacagataatccgggcgcgg                                                >  1:761630‑M2/1‑47 (MQ=255)
                                                        ggCCGCGGCGACAAACGCACTGGCGGTAGAAATATTGATACTGTTgctgccgtcaccgccagtaccgacgatatcagcaaacagataatccgggcgcggga                                              >  1:548424‑M2/1‑45 (MQ=255)
                                                          ccGCGGCGACAAACGCACTGGCGGTAGAAATATTGATACTGTTgctgccgtcaccgccagtaccgacgatatcagcaaacagataatccgggcgcgggaac                                            >  2:96564‑M2/1‑43 (MQ=255)
                                                           cgcgGCGACAAACGCACTGGCGGTAGAAATATTGATTCTGTTgctgccgtcaccgccagtaccgacgatatcagcaaacagataatccgggcgcgggaacg                                           >  1:1561769‑M2/1‑42 (MQ=255)
                                                           cgcgGCGACAAACGCACTGGCGGTAGAAATATTGATACTGTTgctgccgtcaccgccagtaccgacgatatcagcaaacagataatccgggcgcgggaacg                                           >  1:1550395‑M2/1‑42 (MQ=255)
                                                                     aaCGCACTGGCGGTAGAAATATTGATACTGTTgctgccgtcaccgccagtaccgacgatatcagcaaacagataatccgggcgcgggaacggcgcggcgtt                                 <  1:1027185‑M2/101‑70 (MQ=255)
                                                                           cTGGCGGTAGAAATATTGATACTGTTgctgccgtcaccgccagtaccgacgatatcagcaaacagataatccgggcgcgggaacggcgcggcgttttccag                           <  2:1399802‑M2/101‑76 (MQ=255)
                                                                                ggTAGAAATATTGATACTGTTgctgccgtcaccgccagtaccgacgatatcagcaaacagataatccgggcgcgggaacggcgcggcgttttccagtagcg                      <  1:753978‑M2/101‑81 (MQ=255)
                                                                                    gAAATATTGATACTGTTgctgccgtcaccgccagtaccgacgatatcagcaaacagataatccgggcgcgggaacggcgcggcgttttccagtagcgcggt                  <  1:1092785‑M2/101‑85 (MQ=255)
                                                                                    gAAATATTGATACTGTTgctgccgtcaccgccagtaccgacgatatcagcaaacagataatccgggcgcgggaacggcgcggcgttttccagtagcgcggt                  <  2:657400‑M2/101‑85 (MQ=255)
                                                                                       atatTGATACTGTTgctgccgtcaccgccagtaccgacgatatcagcaaacagataatccgggcgcgggaacggcgcggcgttttccagtagcgcggttgc               <  1:471365‑M2/101‑88 (MQ=255)
                                                                                          ttGATACTGTTgctgccgtcaccgccagtaccgacgatatcagcaaacagataatccgggcgcgggaacggcgcggcgttttccagtagcgcggttgctgc            <  1:305215‑M2/101‑91 (MQ=255)
                                                                                            gATACTGTTgctgccgtcaccgccagtaccgacgatatcagcaaacagataatccgggtgcgggaacggcgcggcgttttccagtagcgcggttgctgctc          <  2:596956‑M2/101‑93 (MQ=255)
                                                                                            gATACTGTTgctgccgtcaccgccagtaccgacgatatcagcaaacagataatccgggcgcgggaacggcgcggcgttttccagtagcgcggttgctgctc          <  1:515894‑M2/101‑93 (MQ=255)
                                                                                             aTACTGTTgctgccgtcaccgccagtaccgacgatatcagcaaacagataatccgggcgcgggaacggcgcggcgttttccagtagcgcggttgctgctcc         <  2:650424‑M2/101‑94 (MQ=255)
                                                                                              tACTGTTgctgccgtcaccgccagtaccgacgatatcagcaaacagataatccgggcgcgggaacggcgcggcgttttccagtagcgcggttgctgctccg        >  2:156765‑M2/1‑7 (MQ=255)
                                                                                               aCTGTTgctgccgtcaccgccagtaccgacgatatcagcaaacagataatccgggcgcgggaacggcgcggcgttttccagtagcgcggttgctgctccgg       <  1:108376‑M2/101‑96 (MQ=255)
                                                                                                 tGTTgctgccgtcaccgccagtaccgacgatatcagcaaacagataatccgggcgcgggaacggcgcggcgttttccagtagcgcggttgctgctccggcg     >  2:1237383‑M2/1‑4 (MQ=255)
                                                                                                 tGTTgctgccgtcaccgccagtaccgacgatatcagcaaacagataatccgggcgcgggaacggcgcggcgttttccagtagcgcggttgctgctccggcg     <  1:13204‑M2/101‑98 (MQ=255)
                                                                                                    tgctgccgtcaccgccagtaccgacgatatcagcaaacagataatccgggcgcgggaacggcgcggcgttttccagtagcgcggttgctgctccggcgatc  <  2:1362303‑M2/101‑101 (MQ=255)
                                                                                                    |                                                                                                    
GAACCAGATTTACTGGAGACGCTACGGTTGCCGTGTTTCGCCACTTTCAGCCCACAGGCCGCGGCGACAAACGCACTGGCGGTAGAAATATTGATACTGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  46/30610‑30710

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.