New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? 140 1 =0 (0.000)38 (0.580) 31/198 1.3 100% intergenic (–/–) –/– –/–
?72 = 22436 0 (0.000)intergenic (–/–) –/– –/–

TGCGTACCATCGACTAAAAGTATGCACACGGGCAGCACGACGCTGCCCGATTTTTTTGCAGGGATGAGCGATGATTTCACGCAGATGTTTGTTACTGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GG  >  72/22337‑22438
                                                                                                   |                                                                                                    
tGCGTACCATCGACTAAAAGTATGCACACGGGCAGCACGACGCTGCCCGATTTTTTTGCAGGGATGAGCGATGATTTCACGCAGATGTTTGTTACTGGCTg                                                                                                     <  1:779182‑M2/101‑2 (MQ=255)
   gTACCATCGACTAAAAGTATGCACACGGGCAGCACGACGCTGCCCGATTTTTTTGCAGGGATGAGCGATGATTTCACGCAGATGTTTGTTACTGGCTgccg                                                                                                  <  2:437088‑M2/101‑5 (MQ=255)
     aCCATCGACTAAAAGTATGCACACGGGCAGCACGACGCTGCCCGATTTTTTTGCAGGGATGAGCGATGATTTCACGCAGATGTTTGTTACTGGCTgccgcc                                                                                                <  1:1600318‑M2/101‑7 (MQ=255)
          cGACTAAAAGTATGCACACGGGCAGCACGACGCTGCCCGATTTTTTTGCAGGGATGAGCGATGATTTCACGCAGATGTTTGTTACTGGCTgccgccccaac                                                                                           <  2:1453407‑M2/101‑12 (MQ=255)
            aCTAAAAGTATGCACACGGGCAGCACGACGCTGCCCGATTTTTTTGCAGGGATGAGCGATGATTTCACGCAGATGTTTGTTACTGGCTgccgccgcaacgt                                                                                         <  1:1531952‑M2/101‑14 (MQ=255)
             cTAAAAGTATGCACACGGGCAGCACGACGCTGCCCGATTTTTTTGCAGGGATGAGCGATGATTTCACGCAGATGTTTGTTACTGGCTgccgccgcaacgtt                                                                                        >  2:668477‑M2/1‑87 (MQ=255)
                aaaGTATGCACACGGGCAGCACGACGCTGCCCGATTTTTTTGCAGGGATGAGCGATGATTTCACGCAGATGTTTGTTACTGGCTgccgccgcaacgttaac                                                                                     >  2:1698175‑M2/1‑84 (MQ=255)
                   gTATGCACACGGGCAGCACGACGCTGCCCGATTTTTTTGCAGGGATGAGCGATGATTTCACGCAGATGTTTGTTACTGGCTgccgccgcaacgttaactgc                                                                                  <  1:148816‑M2/101‑21 (MQ=255)
                         acacGGGCAGCACGACGCTGCCCGATTTTTTTGCAGGGATGAGCGATGATTTCACGCAGATGTTTGTTACTGGCTgccgccgcaacgttaactgccggatc                                                                            <  2:714216‑M2/101‑27 (MQ=255)
                          cacGGGCAGCACGACGCTGCCCGATTTTTTTGCAGGGATGAGCGATGATTTCACGCAGATGTTTGTTACTGGCTgccgccgcaacgttaactgccggatca                                                                           <  2:962089‑M2/101‑28 (MQ=255)
                                cagcaCGACGCTGCCCGATTTTTTTGCAGGGATGAGCGATGATTTCACGCAGATGTTTGTTACTGGCTgccgccgcaacgttaactgccggatcaggcttc                                                                     >  2:779177‑M2/1‑68 (MQ=255)
                                       acgCTGCCCGATTTTTTTGCAGGGATGAGCGATGATTTCACGCAGATGTTTGTTACTGGCTgccgccgcaacgttaactgccggatcaggcttcggctata                                                              >  1:1330504‑M2/1‑61 (MQ=255)
                                        cgCTGCCCGATTTTTTTGCAGGGATGAGCGATGATTTCACGCAGATGTTTGTTACTGGCTgccgccgcaacgttaactgccggatcaggcttcggctatat                                                             >  2:1092216‑M2/1‑60 (MQ=255)
                                          cTGCCCGATTTTTTTGCAGGGATGAGCGATGATTTCACGCAGATGTTTGTTACTGGCTgccgccgcaacgttaactgccggatcaggcttcggctatatgc                                                           <  1:11742‑M2/101‑44 (MQ=255)
                                              ccGATTTTTTTGCAGGGATGAGCGATGATTTCACGCAGATGTTTGTTACTGGCTgccgccgcaacgttaactgccggatcaggcttcggctatatgcgtta                                                       >  1:1420713‑M2/1‑54 (MQ=255)
                                                 aTTTTTTTGCAGGGATGAGCGATGATTTCACGCAGATGTTTGTTACTGGCTgccgccgcaacgttaactgccggatcaggcttcggctatatgcgttattg                                                    <  1:868028‑M2/101‑51 (MQ=255)
                                                 aTTTTTTTGCAGGGATGAGCGATGATTTCACGCAGATGTTTGTTACTGGCTgccgccgcaacgttaactgccggatcaggcttcggctatatgcgttattg                                                    <  2:614706‑M2/101‑51 (MQ=255)
                                                 aTTTTTTTGCAGGGATGAGCGATGATTTCACGCAGATGTTTGTTACTGGCTgccgccgcaacgttaactgccggatcaggcttcggctatatgcgttattg                                                    <  2:127938‑M2/101‑51 (MQ=255)
                                                        tGCAGGGATGAGCGATGATTTCACGCAGATGTTTGTTACTGGCTgccgccgcaacgttaactgccggatcaggcttcggctatatgcgttattgggaacca                                             >  2:286921‑M2/1‑44 (MQ=255)
                                                              gATGAGCGATGATTTCACGCAGATGTTTGTTACTGGCTgccgccgcaacgttaactgccggatcaggcttcggctatatgcgttattgggaaccaggttgg                                       >  1:437093‑M2/1‑38 (MQ=255)
                                                               aTGAGCGATGATTTCACGCAGATGTTTGTTACTGGCTgccgccgcaacgttaactgccggatcaggcttcggctatatgcgttattgggaaccaggttggc                                      <  2:921472‑M2/101‑65 (MQ=255)
                                                                tGAGCGATGATTTCACGCAGATTTTTGTTACTGGCTgccgccgcaacgttaactgccggatcaggcttcggctatatgcgttattgggaaccaggttggct                                     >  2:1600312‑M2/1‑36 (MQ=255)
                                                                tGAGCGATGATTTCACGCAGATGTTTGTTACTGGCTgccgccgcaacgttaactgccggatcaggcttcggctatatgcgttattgggaaccaggttggct                                     >  2:1433914‑M2/1‑36 (MQ=255)
                                                                  aGCGATGATTTCACGCAGATGTTTGTTACTGGCTgccgccgcaacgttaactgccggatcaggcttcggctatatgcgttattgggaaccaggttggctcg                                   <  1:441746‑M2/101‑68 (MQ=255)
                                                                          tttCACGCAGATGTTTGTTACTGGCTgccgccgcaacgttaactgccggatcaggcttcggctatatgcgttattgggaaccaggttggctcgaattaacc                           >  1:1394713‑M2/1‑26 (MQ=255)
                                                                          tttCACGCAGATGTTTGTTACTGGCTgccgccgcaacgttaactgccggatcaggcttcggctatatgcgttattgggaaccaggttggctcgaattaacc                           >  2:874816‑M2/1‑26 (MQ=255)
                                                                           ttCACGCAGATGTTTGTTACTGGCTgccgccgcaacgttaactgccggatcaggcttcggctatatgcgttattgggaaccaggttggctcgaattaaccc                          >  1:1041907‑M2/1‑25 (MQ=255)
                                                                           ttCACGCAGATGTTTGTTACTGGCTgccgccgcaacgttaactgccggatcaggcttcggctatatgcgttattgggaaccaggttggctcgaattaaccc                          <  1:667520‑M2/101‑77 (MQ=255)
                                                                             cACGCAGATGTTTGTTACTGGCTgccgccgcaacgttaactgccggatcaggcttcggctatatgcgttattgggaaccaggttggctcgaattaacccat                        >  2:1415403‑M2/1‑23 (MQ=255)
                                                                              aCGCAGATGTTTGTTACTGGCTgccgccgcaacgttaactgccggatcaggcttcggctatatgcgttattgggaaccaggttggctcgaattaacccatc                       >  1:326943‑M2/1‑22 (MQ=255)
                                                                                gCAGATGTTTGTTACTGGCTgccgccgcaacgttaactgccggatcaggcttcggctatatgcgttattgggaaccaggttggctcgaattaacccatcag                     <  2:1264986‑M2/101‑82 (MQ=255)
                                                                                 cAGATGTTTGTTACTGGCTgccgccgcaacgttaactgccggatcaggcttcggctatatgcgttattgggaaccaggttggctcgaattaacccatcagc                    >  2:689444‑M2/1‑19 (MQ=255)
                                                                                     tttttgttacTGGCTgccgccgcaacgttaactgccggatcaggcttcggctatatgcgttattgggaaccaggttggctcgaattaacccatcagcgcat                >  2:1273569‑M2/3‑15 (MQ=255)
                                                                                     tgtttgttACTGGCTgccgccgcaacgttaactgccggatcaggcttcggctatatgcgttattgggaaccaggttggctcgaattaacccatcagcgcat                >  2:1057600‑M2/1‑15 (MQ=255)
                                                                                     tgtttgttACTGGCTgccgccgcaacgttaactgccggatcaggcttcggctatatgcgttattgggaaccaggttggctcgaattaacccatcagcgcat                >  2:1292334‑M2/1‑15 (MQ=255)
                                                                                          gttACTGGCTgccgccgcaacgttaactgccggatcaggcttcggctatatgcgttattgggaaccaggttggctcgaattaacccatcagcgcatcgcct           >  2:1531946‑M2/1‑10 (MQ=255)
                                                                                          gttACTGGCTgccgccgcaacgttaactgccggatcaggcttcggctatatgcgttattgggaaccaggttggctcgaattaacccatcagcgcatcgcct           <  1:347111‑M2/101‑92 (MQ=255)
                                                                                          gttACTGGCTgccgccgcaacgttaactgccggatcaggcttcggctatatgcgttattgggaaccaggttggctcgaattaacccatcagcgcatcgcct           <  2:692226‑M2/101‑92 (MQ=255)
                                                                                                   tgccgccgcaacgttaactgccggatcaggcttcggctatatgcgttattgggaaccaggttggctcgaattaacccatcagcgcatcgccttttttaaag  <  2:1058490‑M2/101‑101 (MQ=255)
                                                                                                   |                                                                                                    
TGCGTACCATCGACTAAAAGTATGCACACGGGCAGCACGACGCTGCCCGATTTTTTTGCAGGGATGAGCGATGATTTCACGCAGATGTTTGTTACTGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GG  >  72/22337‑22438

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.