New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? 113 = 1449624 (0.360)41 (0.640) 26/192 1.5 78.1% intergenic (–/–) –/– –/–
?147 = 9950 0 (0.000)intergenic (–/–) –/– –/–

AATGCTGGTTAAGCGTATTAGCCAACGTAAGAAAGAGATGCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCAACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  147/9850‑9954
                                                                                                    |                                                
aaTGCTGGTTAAGCGTATTAGCCAACGTAAGAAAGAGATGCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATc                                                  <  2:1022432/101‑1 (MQ=255)
aaTGCTGGTTAAGCGTATTAGCCAACGTAAGAAAGAGATGCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATc                                                  <  1:461108/101‑1 (MQ=255)
aaTGCTGGTTAAGCGTATTAGCCAACGTAAGAAAGAGATGCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATc                                                  >  2:539682/1‑101 (MQ=255)
    cTGGTTAAGCGTATTAGCCAACGTAAGAAAGAGATGCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCaacc                                              >  2:1374898‑M2/1‑97 (MQ=255)
    cTGGTTAAGCGTATTAGCCAACGTAAGAAAGAGATGCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCaacc                                              >  2:600908‑M2/1‑97 (MQ=255)
     tGGTTAAGCGTATTAGCCAACGTAAGAAAGAGATGCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCaaccg                                             >  2:3067‑M2/1‑96 (MQ=255)
        ttAAGCGTATTAGCCAACGTAAGAAAGAGATGCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCaaccgtag                                          >  2:781837‑M2/1‑93 (MQ=255)
          aaGCGTATTAGCCAACGTAAGAAAGAGATGCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCaaccgtaggc                                        <  1:1694927‑M2/101‑11 (MQ=255)
              gTATTAGCCAACGTAAGAAAGAGATGCTGGCGGCTGAGGCTTAATTAATGGCCCGATGTGCTTAATCCGGCCAACGAAAACCGTATGAAccgtaggacggg                                    >  2:1363587/1‑91 (MQ=255)
              gTATTAGCCAACGTAAGAAAGAGATGCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCaaccgtaggccgga                                    <  1:46499‑M2/101‑15 (MQ=255)
              gTATTAGCCAACGTAAGAAAGAGATGCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCaaccgtaggccgga                                    <  2:1509183‑M2/101‑15 (MQ=255)
              gTATTAGCCAACGTAAGAAAGAGATGCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCaaccgtaggccgga                                    <  1:421436‑M2/101‑15 (MQ=255)
              gTATTAGCCAACGTAAGAAAGAGATGCTGGCGGCTGAAGCTTAATTAATGGACGGATGTGCTTAATCCGGCCAACGAAAACCGTATCaaccgtaggccgga                                    <  1:198985‑M2/101‑15 (MQ=255)
                aTTAGCCAACGTAAGAAAGAGATGCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCaaccgtaggccggata                                  >  1:933173‑M2/1‑85 (MQ=255)
                aTTAGCCAACGTAAGAAAAATATGCTGGCGGCTGAAGCTTAATTAATGGCCTTATGTGCTTAATCCGGCCAACGAAAACCGTATCaaccgtaggccggata                                  >  2:1668623‑M2/1‑85 (MQ=255)
                 ttAGCCAACGTAAGAAAGAGATGCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCaaccgtaggccggataa                                 <  1:1257552‑M2/101‑18 (MQ=255)
                 ttAGCCAACGTAAGAAAGAGATGCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCaaccgtaggccggataa                                 <  2:1217222‑M2/101‑18 (MQ=255)
                  tAGCCAACGTAAGAAAGAGATGCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCaaccgtaggccggataag                                >  2:375286‑M2/1‑83 (MQ=255)
                   aGCCAACGTAAGAAAGAGATGCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCaaccgtaggccggataagg                               <  2:1674310‑M2/101‑20 (MQ=255)
                      cAACGTAAGAAAGAGATGCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCaaccgtaggccggataaggcgt                            <  1:1491463‑M2/101‑23 (MQ=255)
                      cAACGTAAGAAAGAGATGCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCaaccgtaggccggataaggcgt                            <  2:168982‑M2/101‑23 (MQ=255)
                      cAACGTAAGAAAGAGATGCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCaaccgtaggccggataaggcgt                            <  1:164829‑M2/101‑23 (MQ=255)
                       gacGTAAGAAAGAGATGCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCaaccgtaggccggataaggcgtt                           >  1:750103‑M2/2‑78 (MQ=255)
                       aaCGTAAGAAAGAGATGCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCaaccgtaggccggataaggcgtt                           >  2:684678‑M2/1‑78 (MQ=255)
                       aaCGTAAGAAAGAGATGCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCaaccgtaggccggataaggcgtt                           >  1:1480058‑M2/1‑78 (MQ=255)
                          gTAAGAAAGAGATGCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCaaccgtaggccggataaggcgtttac                        >  2:644517‑M2/1‑75 (MQ=255)
                          gTAAGAAAGAGATGCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCaaccgtaggccggataaggcgtttac                        <  2:779534‑M2/101‑27 (MQ=255)
                          gTAAGAAAGAGATGCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCaaccgtaggccggataaggcgtttac                        >  1:824831‑M2/1‑75 (MQ=255)
                           tAAGAAAGAGATGCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCaaccgtaggccggataaggcgtttacg                       <  1:1060069‑M2/101‑28 (MQ=255)
                           tAAGAAAGAGATGCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCaaccgtaggccggataaggcgtttacg                       <  2:41612‑M2/101‑28 (MQ=255)
                            aagaaagaGATGCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCaaccgtaggccggataaggcgtttacgc                      <  1:1456564‑M2/101‑29 (MQ=255)
                            aagaaagaGATGCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCaaccgtaggccggataaggcgtttacgc                      >  1:739542‑M2/1‑73 (MQ=255)
                             agaaagaGATGCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCaaccgtaggccggataaggcgtttacgcc                     <  2:1127644‑M2/101‑30 (MQ=255)
                              gaaagaGATGCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCaaccgtaggccggataaggcgtttacgccg                    >  2:1459930‑M2/1‑71 (MQ=255)
                              gaaagaGATGCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCaaccgtaggccggataaggcgtttacgccg                    <  2:869812‑M2/101‑31 (MQ=255)
                              gaaagaGATGCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGACCAACGAAAACCGTATCaaccgtaggccggataaggcgtttacgccg                    >  1:981007‑M2/1‑71 (MQ=255)
                               aaagaGATGCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCaaccgtaggccggataaggcgtttacgccgc                   <  1:233355‑M2/101‑32 (MQ=255)
                                 agagATGCTGGCGGCTGAAGCTTAATTAATGTCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCaaccgtaggccggataaggagcttatgccgcat                 <  1:1068494‑M2/101‑34 (MQ=255)
                                 agagATGCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCaaccgtaggccggataaggcgtttacgccgcat                 <  2:757011‑M2/101‑34 (MQ=255)
                                  gagaTGCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCaaccgtaggccggataaggcgtttacgccgcatc                <  1:608765‑M2/101‑35 (MQ=255)
                                   agaTGCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCaaccgtaggccggataaggcgtttacgccgcatcc               >  1:1589731‑M2/1‑66 (MQ=255)
                                   agaTGCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCaaccgtaggccggataaggcgtttacgccgcatcc               <  2:647989‑M2/101‑36 (MQ=255)
                                        cTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCaaccgtaggccggataaggcgtttacgccgcatccggcag          >  1:1713743‑M2/1‑61 (MQ=255)
                                         tGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCaaccgtaggccggataaggcgtttacgccgcatccggcagt         <  2:896626‑M2/101‑42 (MQ=255)
                                            cggcTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCaaccgtaggccggataaggcgtttacgccgcatccggcagtttc      <  1:1129579‑M2/101‑45 (MQ=255)
                                                tGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCaaccgtaggccggataaggcgtttacgccgcatccggcagtttcacat  >  1:970390‑M2/1‑53 (MQ=255)
                                                tGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCaaccgtaggccggataaggcgtttacgccgcatccggcagtttcacat  >  2:1406306‑M2/1‑53 (MQ=255)
                                                                                                    |                                                
AATGCTGGTTAAGCGTATTAGCCAACGTAAGAAAGAGATGCTGGCGGCTGAAGCTTAATTAATGGCCGGATGTGCTTAATCCGGCCAACGAAAACCGTATCAACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  147/9850‑9954

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.