New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? 111 = 963290 (1.350)32 (0.480) 22/200 2.5 41.6% intergenic (–/–) –/– –/–
?176 1 = 0 (0.000)intergenic (–/–) –/– –/–

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCATCCTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCTGTGTTTGTCATACGTAAAAAAGGGCGATCTTGCGACCGCCCTTTTTTTATTAAATGTG  >  176/1‑101
                                                                                 |                                                                                                    
acaaagtgttcgttgtttttgccggatgcggcgtgaacgccttatccggcctacaaaatcgcttaaattcaatatattgcaCCATCCTCGTAGGCCTGATa                                                                                   >  2:41114‑M2/82‑101 (MQ=255)
acaaagtgttcgttgtttttgccggatgcggcgtgaacgccttatccggcctacaaaatcgcttaaattcaatatattgcaCCATCCTCGTAGGCCTGATa                                                                                   <  1:1285918‑M2/20‑1 (MQ=255)
   aagtgttcgttgtttttgccggatgcggcgtgaacgccttatccggcctacaaaatcgcttaaattcaatatattgcaCCATCCTCGTAGGCCTGATAAGc                                                                                <  2:1569772‑M2/23‑1 (MQ=255)
     gtgttcgttgtttttgccggatgcggcgtgaacgccttatccggcctacaaaatcgcttaaattcaatatattgcaCCATCCTCGTAGGCCTGATAAGCGt                                                                              <  2:772358‑M2/25‑1 (MQ=255)
        ttcgttgtttttgccggatgcggcgtgaacgccttatccggcctacaaaatcgcttaaattcaatatattgcaCCATCCTCGTAGGCCTGATAAGCGTAgc                                                                           <  1:103613‑M2/28‑1 (MQ=255)
         tcgttgtttttgccggatgcggcgtgaacgccttatccggcctacaaaatcgcttaaattcaatatattgcaCCATCCTCGTAGGCCTGATAAGCGTAgcg                                                                          >  1:932989‑M2/73‑101 (MQ=255)
           gttgtttttgccggatgcggcgtgaacgccttatccggcctacaaaatcgcttaaattcaatatattgcaCCATCCTCGTAGGCCTGATAAGCGTAGCGCa                                                                        >  1:1701033‑M2/71‑101 (MQ=255)
              gtttttgccggatgcggcgtgaacgccttatccggcctacaaaatcgcttaaattcaatatattgcaCCATCCTCGTAGGCCTGATAAGCGTAGCGCATCa                                                                     >  1:33915‑M2/68‑101 (MQ=255)
                  ttgccggatgcggcgtgaacgccttatccggcctacaaaatcgcttaaattcaatatattgcaCCATCCTCGTAGGCCTGATAAGCGTAGCGCATCAGGCa                                                                 <  1:543580‑M2/38‑1 (MQ=255)
                    gccggatgcggcgtgaacgccttatccggcctacaaaatcgcttaaattcaatatattgcaCCATCCTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAAt                                                               <  1:193486‑M2/40‑1 (MQ=255)
                     ccggatgcggcgtgaacgccttatccggcctacaaaatcgcttaaattcaatatattgcaCCATCCTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAAtt                                                              <  2:1437003‑M2/41‑1 (MQ=255)
                     ccggatgcggcgtgaacgccttatccggcctacaaaatcgcttaaattcaatatattgcaCCATCCTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAAtt                                                              <  1:666328‑M2/41‑1 (MQ=255)
                     ccggatgcggcgtgaacgccttatccggcctacaaaatcgcttaaattcaatatattgcaCCATCCTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAAtt                                                              >  1:1092723‑M2/61‑101 (MQ=255)
                      cggatgcggcgtgaacgccttatccggcctacaaaatcgcttaaattcaatatattgcaCCATCCTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTc                                                             >  1:1180735‑M2/60‑101 (MQ=255)
                            cggcgggaacgccttatccggcctacaaaatcgcttaaattcaatatattgcaCCATCCTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCTGTGtt                                                       >  2:1714590‑M2/54‑101 (MQ=255)
                                gtgaacgccttatccggcctacaaaatcgcttaaattcaatatattgcaCCATCCTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCTGTGTTTGTc                                                   >  1:589446‑M2/50‑101 (MQ=255)
                                    acgccttatccggcctacaaaatcgcttaaattcaatatattgcaCCATCCTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCTGTGTTTGTCATAc                                               <  2:80001‑M2/56‑1 (MQ=255)
                                    acgccttatccggcctacaaaatcgcttaaattcaatatattgcaCCATCCTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCTGTGTTTGTCATAc                                               <  1:1246497‑M2/56‑1 (MQ=255)
                                      gccttatccggcctacaaaatcgcttaaattcaatatattgcaCCATCCTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCTGTGTTTGTCATACGt                                             >  1:1557421‑M2/44‑101 (MQ=255)
                                            tccggcctacaaaatcgcttaaattcaatatattgcaCCATCCTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCTGTGTTTGTCATACGTaaaaaa                                       <  2:816004‑M2/64‑1 (MQ=255)
                                             ccggcctacaaaatcgcttaaattcaatatattgcaCCATCCTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCTGTGTTTGTCATACGTAAAAAAg                                      <  2:1056471‑M2/65‑1 (MQ=255)
                                             ccggcctacaaaatcgcttaaattcaatatattgcaCCATCCTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCTGTGTTTGTCATACGTAAAAAAg                                      <  1:597973‑M2/65‑1 (MQ=255)
                                                gcctacaaaatcgcttaaattcaatatattgcaCCATCCTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCTGTGTTTGTCATACGTAAAAAAGGGc                                   <  2:1052959‑M2/68‑1 (MQ=255)
                                                gcctacaaaatcgcttaaattcaatatattgcaCCATCCTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCTGTGTTTGTCATACGTAAAAAAGGGc                                   >  1:1068627‑M2/34‑101 (MQ=255)
                                                  ctacaaaatcgcttaaattcaatatattgcaCCATCCTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCTGTGTTTGTCATACGTAAAAAAGGGCGa                                 >  2:1438212‑M2/32‑101 (MQ=255)
                                                     caaaatcgcttaaattcaatatattgcaCCATCCTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCTGTGTTTGTCATACGTAAAAAAGGGCGATCt                              <  2:1186422‑M2/73‑1 (MQ=255)
                                                       aaatcgcttaaattcaatatattgcaCCATCCTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCTGTGTTTGTCATACGTAAAAAAGGGCGATCTTg                            >  1:815824‑M2/27‑101 (MQ=255)
                                                         atcgcttaaattcaatatattgcaCCATCCTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCTGTGTTTGTCATACGTAAAAAAGGGCGATCTTGCg                          >  1:640640‑M2/25‑101 (MQ=255)
                                                              ttaaattcaatatattgcaCCATCCTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCTGTGTTTGTCATACGTAAAAAAGGGCGATCTTGCGACCGc                     >  2:1190582‑M2/20‑101 (MQ=255)
                                                                 aattcaatatattgcaCCATCCTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCTGTGTTTGTCATACGTAAAAAAGGGCGATCTTGCGACCGCCCt                  <  2:1122947‑M2/85‑1 (MQ=255)
                                                                               caCCATCCTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCTGTGTTTGTCATACGTAAAAAAGGGCGATCTTGCGACCGCCCTTTTTTTATTAAAtg    >  2:584821‑M2/3‑101 (MQ=255)
                                                                               caCCATCCTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCTGTGTTTGTCATACGTAAAAAAGGGCGATCTTGCGACCGCCCTTTTTTTATTAAAtg    >  2:243939‑M2/3‑101 (MQ=255)
                                                                                 ccATCCTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCTGTGTTTGTCATACGTAAAAAAGGGCGATCTTGCGACCGCCCTTTTTTTATTAAAtgtg  <  1:1570437/101‑1 (MQ=255)
                                                                                 ccATCCTCGTAGGCCTGATAAGCCTAGCGCATCAGCCAATTCTGTGTTTGTCATACGTAAAAAAGGGCGATCTTGCGACCGCCCTTTTTTTATTAAAtgtg  <  2:222577/101‑1 (MQ=255)
                                                                                 |                                                                                                    
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCATCCTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCTGTGTTTGTCATACGTAAAAAAGGGCGATCTTGCGACCGCCCTTTTTTTATTAAATGTG  >  176/1‑101

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.