New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? 10 1 =0 (0.000)29 (0.470)
+TAAACAA
23/186 1.6 100% intergenic (–/–) –/– –/–
?99 = 16584 0 (0.000)intergenic (–/–) –/– –/–

CCGCCAGTTGTTACATAACGCGCTGGAAAAGGCGTTACAGGCTTTAGGTTAACGGAAATCCGAAGGAAAATTCCGGCTTCCTATTGAAGACAAAGTGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  99/16484‑16584
                                                                                                    |                                                                            
ccGCCAGTTGTTACATAACGCGCTGGAAAAGGCGTTACAGGCTTTAGGTTAACGGAAATCCGAAGGAAAATTCCGGCTTCCTATTGAAGACAAAGTGcgcg                                                                              >  2:497236/1‑101 (MQ=255)
  gCCAGTTGTTACATAACGCGCTGGAAAAGGCGTTACAGGCTTTAGGTTAACGGAAATCCGAAGGAAAATTCCGGCTTCCTATTGAAGACAAAGTGCGCGtt                                                                            >  2:1587314‑M2/1‑99 (MQ=255)
     aGTTGTTACATAACGCGCTGGAAAAGGCGTTACAGGCTTTAGGTTAACGGAAATCCGAAGGAAAATTCCGGCTTCCTATTGAAGACAAAGTGCGCGttgtt                                                                         >  2:1515508‑M2/1‑96 (MQ=255)
     aGTTGTTACATAACGCGCTGGAAAAGGCGTTACAGGCTTTAGGTTAACGGAAATCCGAAGGAAAATTCCGGCTTCCTATTGAAGACAAAGTGCGCGttgtt                                                                         >  1:135339‑M2/1‑96 (MQ=255)
     aGTTGTTACATAACGCGCTGGAAAAGGCGTTACAGGCTTTAGGTTAACGGAAATCCGAAGGAAAATTCCGGCTTCCTATTGAAGACAAAGTGCGCGttgtt                                                                         <  2:812442‑M2/101‑6 (MQ=255)
      gttgttACATAACGCGCTGGAAAAGGCGTTACAGGCTTTAGGTTAACGGAAATCCGAAGGAAAATTCCGGCTTCCTATTGAAGACAAAGTGCGCGttgttt                                                                        >  2:424668‑M2/1‑95 (MQ=255)
       ttgttACATAACGCGCTGGAAAAGGCGTTACAGGCTTTAGGTTAACGGAAATCCGAAGGAAAATTCCGGCTTCCTATTGAAGACAAAGTGCGCGttgttta                                                                       >  1:1709287‑M2/1‑94 (MQ=255)
        tgttACATAACGCGCTGGAAAAGGCGTTACAGGCTTTAGGTTAACGGAAATCCGAAGGAAAATTCCGGCTTCCTATTGAAGACAAAGTGCGCGttgtttat                                                                      <  2:94542‑M2/101‑9 (MQ=255)
        tgttACATAACGCGCTGGAAAAGGCGTTACAGGCTTTAGGTTAACGGAAATCCGAAGGAAAATTCCGGCTTCCTATTGAAGACAAAGTGCGCGttgtttat                                                                      <  2:1031507‑M2/101‑9 (MQ=255)
             cATAACGCGCTGGAAAAGGCGTTACAGGCTTTAGGTTAACGGAAATCCGAAGGAAAATTCCGGCTTCCTATTGAAGACAAAGTGCGCGttgtttatgccgg                                                                 >  1:104016‑M2/1‑88 (MQ=255)
              aTAACGCGCTGGAAAAGGCGTTACAGGCTTTAGGTTAACGGAAATCCGAAGGAAAATTCCGGCTTCCTATTGAAGACAAAGTGCGCGttgtttatgccgga                                                                <  1:1111236‑M2/101‑15 (MQ=255)
               tAACGCGCTGGAAAAGGCGTTACAGGCTTTAGGTTAACGGAAATCCGAAGGAAAATTCCGGCTTCCTATTGAAGACAAAGTGCGCGttgtttatgccggat                                                               >  1:637205‑M2/1‑86 (MQ=255)
               tAACGCGCTGGAAAAGGCGTTACAGGCTTTAGGTTAACGGAAATCCGAAGGAAAATTCCGGCTTCCTATTGAAGACAAAGTGCGCGttgtttatgccggat                                                               >  1:284750‑M2/1‑86 (MQ=255)
                  cgcgCTGGAAAAGGCGTTACAGGCTTTAGGTTAACGGAAATCCGAAGGAAAATTCCGGCTTCCTATTGAAGACAAAGTGCGCGttgtttatgccggatgcg                                                            >  2:1237401‑M2/1‑83 (MQ=255)
                              ggCGTTACAGGCTTTAGGTTAACGGAAATCCGAAGGAAAATTCCGGCTTCCTATTGAAGACAAAGTGCGCGttgtttatgccggatgcggcgtgaacgcct                                                >  2:88587‑M2/1‑71 (MQ=255)
                               gCGTTACAGGCTTTAGGTTAACGGAAATCCGAAGGAAAATTCCGGCTTCCTATTGAAGACAAAGTGCGCGttgtttatgccggatgcggcgtgaacgcctt                                               >  2:1124295‑M2/1‑70 (MQ=255)
                                 gTTACAGGCTTTAGGTTAACGGAAATCCGAAGGAAAATTCCGGCTTCCTATTGAAGACAAAGTGCGCGttgtttatgccggatgcggcgtgaacgccttat                                             <  1:563621‑M2/101‑34 (MQ=255)
                                  ttACAGGCTTTAGGTTAACGGAAATCCGAAGGAAAATTCCGGCTTCCTATTGAAGACAAAGTGCGCGttgtttatgccggatgcggcgtgaacgccttatc                                            <  2:301725‑M2/101‑35 (MQ=255)
                                    aCAGGCTTTAGGTTAACGGAAATCCGAAGGAAAATTCCGGCTTCCTATTGAAGACAAAGTGAGCGttgtttatgccggatgcggcgtgaacgccctatacg                                          <  1:112490‑M2/101‑37 (MQ=255)
                                     cAGGCTTTAGGTTAACGGAAATCCGAAGGAAAATTCCGGCTTCCTATTGAAGACAAAGTGCGCGttgtttatgccggatgcggcgtgaacgccttatccgg                                         >  2:864856‑M2/1‑64 (MQ=255)
                                      aGGCTTTAGGTTAACGGAAATCCGAAGGAAAATTCCGGCTTCCTATTGAAGACAAAGTGCGCGttgtttatgccggatgcggcgtgaacgccttatccggc                                        <  1:869592‑M2/101‑39 (MQ=255)
                                        gCTTTAGGTTAACGGAAATCCGAAGGAAAATTCCGGCTTCCTATTGAAGACAAAGTGCGCGttgtttatgccggatgcggcgtgaacgccttatccggcct                                      >  1:779074‑M2/1‑61 (MQ=255)
                                         cTTTAGGTTAACGGAAATCCGAAGGAAAATTCCGGCTTCCTATTGAAGACAAAGTGCGCGttgtttatgccggatgcggcgtgaacgccttatccggccta                                     <  1:1707173‑M2/101‑42 (MQ=255)
                                         cTTTAGGTTAACGGAAATCCGAAGGAAAATTCCGGCTTCCTATTGAAGACAAAGTGCGCGttgtttatgccggatgcggcgtgaacgccttatccggccta                                     >  2:1417930‑M2/1‑60 (MQ=255)
                                          tttAGGTTAACGGAAATCCGAAGGAAAATTCCGGCTTCCTATTGAAGACAAAGTGCGCGttgtttatgccggatgcggcgtgaacgccttatccggcctac                                    >  1:268350‑M2/1‑59 (MQ=255)
                                           ttAGGTTAACGGAAATCCGAAGGAAAATTCCGGCTTCCTATTGAAGACAAAGGGCGCGttgtttatgccggatgcggcgtgaaaaccttatccggcctaca                                   <  2:1430894‑M2/101‑44 (MQ=255)
                                            tAGGTTAACGGAAATCCGAAGGAAAATTCCGGCTTCCTATTGAAGACAAAGTGCGCGttgtttatgccggatgcggcgtgaacgccttatccggcctacaa                                  >  2:1062231‑M2/1‑57 (MQ=255)
                                                              aaGGAAAATTCCGGCTTCCTATTGAAGACAAAGTGCGCGttgtttatgccggatgcggcgtgaacgccttatccggcctacaaaccgcgcaaattcaatat                >  1:1031512‑M2/1‑39 (MQ=255)
                                                              aaGGAAAATTCCGGCTTCCTATTGAAGACAAAGTGCGCGttgtttatgccggatgcggcgtgaacgccttatccggcctacaaaccgcgcaaattcaatat                <  1:314789‑M2/101‑63 (MQ=255)
                                                                   aaaTTCCGGCTTCCTATTGAAGACAAAGTGCGCGttgtttatgccggatgcggcgtgaacgccttatccggcctacaaaccgcgcaaattcaatatattgc           <  1:976644‑M2/101‑68 (MQ=255)
                                                                     aTTCCGGCTTCCTATTGAAGACAAAGTGCGCGttgtttatgccggatgcggcgtgaacgccttatccggcctacaaaccgcgcaaattcaatatattgcgg         <  2:74709‑M2/101‑70 (MQ=255)
                                                                     aTTCCGGCTTCCTATTGAAGACAAAGTGCGCGttgtttaagccggatgcggcgtgaacgccttatccggcctacaaaccgcgcaaattcaatatattgcgg         <  2:1043354‑M2/101‑70 (MQ=255)
                                                                        ccGGCTTCCTATTGAAGACAAAGTGCGCGttgtttatgccggatgcggcgtgaacgccttatccggcctacaaaccgcgcaaattcaatatattgcggaga      <  2:1434575‑M2/101‑73 (MQ=255)
                                                                         cGGCTTCCTATTGAAGACAAAGTGCGCGttgtttatgccggatgcggcgtgaacgccttatccggcctacaaaccgcgcaaattcaatatattgcggagaa     >  2:1277461‑M2/1‑28 (MQ=255)
                                                                         cGGCTTCCTATTGAAGACAAAGTGCGCGttgtttatgccggatgcggcgtgaacgccttatccggcctacaaaccgcgcaaattcaatatattgcggagaa     <  2:1686913‑M2/101‑74 (MQ=255)
                                                                            cTTCCTATTGAAGACAAAGTGCGCGttgtttatgccggatgcggcgtgaacgccttatccggcctacaaaccgcgcaaattcaatatattgcggagaaaat  <  1:715478‑M2/101‑77 (MQ=255)
                                                                                                    |                                                                            
CCGCCAGTTGTTACATAACGCGCTGGAAAAGGCGTTACAGGCTTTAGGTTAACGGAAATCCGAAGGAAAATTCCGGCTTCCTATTGAAGACAAAGTGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  99/16484‑16584

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.