New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? 10 1 =0 (0.000)24 (0.420) 18/172 2.7 100% intergenic (–/–) –/– –/–
?64 = 23941 0 (0.000)intergenic (–/–) –/– –/–

TGCCAAATAGATCACAGATTTCTCATCTGAATCACCTTGCTTTTGGCGAAAAAATCCCCGCAGAGCGGGGCTCAGACAGATATCAATGTGCGCTTTGTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGCCGGATGCGGCG  >  64/23842‑23955
                                                                                                   |                                                                        
tGCCAAATAGATCACAGATTTCTCATCTGAATCACCTTGCTTTTGGCGAAAAAATCCCCGCAGAGCGGGGCTCAGACAGATATCAATGTGCGCTTTGTCAt                                                                         >  2:1634267‑M2/1‑100 (MQ=255)
tGCCAAATAGATCACAGATTTCTCATCTGAATCACCTTGCTTTTGGCGAAAAAATCCCCGCAGAGCGGGGCTCAGACAGATATCAATGTGCGCTTTGTCAt                                                                         >  2:704692‑M2/1‑100 (MQ=255)
tGCCAAATAGATCACAGATTTCTCATCTGAATCACCTTGCTTTTGGCGAAAAAATCCCCGCAGAGCGGGGCTCAGACAGATATCAATGTGCGCTTTGTCAt                                                                         >  1:1584635‑M2/1‑100 (MQ=255)
 gCCAAATAGATCACAGATTTCTCATCTGAATCACCTTGCTTTTGGCGAAAAAATCCCCGCAGAGCGGGGCTCAGACAGATATCAATGTGCGCTTTGTCAtg                                                                        <  1:1277469‑M2/101‑3 (MQ=255)
    aaaTAGATCACAGATTTCTCATCTGAATCACCTTGCTTTTGGCGAAAAAATCCCCGCAGAGCGGGGCTCAGACAGATATCAATGTGCGCTTTGTCAtgccg                                                                     <  1:963609‑M2/101‑6 (MQ=255)
      aTAGATCACAGATTTCTCATCTGAATCACCTTGCTTTTGGCGAAAAAATCCCCGCAGAGCGGGGCTCAGACAGATATCAATGTGCGCTTTGTCAtgccgga                                                                   <  1:753565‑M2/101‑8 (MQ=255)
       tAGATCACAGATTTCTCATCTGAATCACCTTGCTTTTGGCGAAAAAATCCCCGCAGAGCGGGGCTCAGACAGATATCAATGTGCGCTTTGTCAtgccggat                                                                  >  1:185947‑M2/1‑93 (MQ=255)
       tAGATCACAGATTTCTCATCTGAATCACCTTGCTTTTGGCGAAAAAATCCCCGCAGAGCGGGGCTCAGACAGATATCAATGTGCGCTTTGTCAtgccggat                                                                  <  2:381258‑M2/101‑9 (MQ=255)
       tAGATCACAGATTTCTCATCTGAATCACCTTGCTTTTGGCGAAAAAATCCCCGCAGAGCGGGGCTCAGACAGATATCAATGTGCGCTTTGTCAtgccggat                                                                  <  2:159587‑M2/101‑9 (MQ=255)
       tAGATCACAGATTTCTCATCTGAATCACCTTGCTTTTGGCGAAAAAATCCCCGCAGAGCGGGGCTCAGACAGATATCAATGTGCGCTTTGTCAtgccggat                                                                  >  2:1221272‑M2/1‑93 (MQ=255)
        aGATCACAGATTTCTCATCTGAATCACCTTGCTTTTGGCGAAAAAATCCCCGCAGAGCGGGGCTCAGACAGATATCAATGTGCGCTTTGTCAtgccggatg                                                                 <  2:751732‑M2/101‑10 (MQ=255)
         gATCACAGATTTCTCATCTGAATCACCTTGCTTTTGGCGAAAAAATCCCCGCAGAGCGGGGCTCAGACAGATATCAATGTGCGCTTTGTCAtgccggatgc                                                                <  2:1138009‑M2/101‑11 (MQ=255)
         gATCACAGATTTCTCATCTGAATCACCTTGCTTTTGGCGAAAAAATCCCCGCAGAGCGGGGCTCAGACAGATATCAATGTGCGCTTTGTCAtgccggatgc                                                                >  1:247389‑M2/1‑91 (MQ=255)
          aTCACAGATTTCTCATCTGAATCACCTTGCTTTTGGCGAAAAAATCCCCGCAGAGCGGGGCTCAGACAGATATCAATGTGCGCTTTGTCAtgccggatgcg                                                               <  1:1135983‑M2/101‑12 (MQ=255)
          aTCACAGATTTCTCATCTGAATCACCTTGCTTTTGGCGAAAAAATCCCCGCAGAGCGGGGCTCAGACAGATATCAATGTGCGCTTTGTCAtgccggatgcg                                                               >  1:1279122‑M2/1‑90 (MQ=255)
          aTCACAGATTTCTCATCTGAATCACCTTGCTTTTGGCGAAAAAATCCCCGCAGAGCGGGGCTCAGACAGATATCAATGTGCGCTTTGTCAtgccggatgcg                                                               >  2:1575991‑M2/1‑90 (MQ=255)
           tCACAGATTTCTCATCTGAATCACCTTGCTTTTGGCGAAAAAATCCCCGCAGAGCGGGGCTCAGACAGATATCAATGTGCGCTTTGTCAtgccggatgcgg                                                              <  2:29531‑M2/101‑13 (MQ=255)
            cacaGATTTCTCATCTGAATCACCTTGCTTTTGGCGAAAAAATCCCCGCAGAGCGGGGCTCAGACAGATATCAATGTGCGCTTTGTCAtgccggatgcggc                                                             <  1:1101217‑M2/101‑14 (MQ=255)
            cacaGATTTCTCATCTGAATCACCTTGCTTTTAGCAAAAAAATCCCCGCAGAGCGGGGCTCAGACAGATATCAATGTGCGCTTTGTCAtgccggaggcggc                                                             <  2:783663‑M2/101‑14 (MQ=255)
             acaGATTTCTCATCTGAATCACCTTGCTTTTGGCGAAAAAATCCCCGCAGAGCGGGGCTCAGACAGATATCAATGTGCGCTTTGTCAtgccggatgcggcg                                                            <  1:1676394‑M2/101‑15 (MQ=255)
                 aTTTCTCATCTGAATCACCTTGCTTTTGGCGAAAAAATCCCCGCAGAGCGGGGCTCAGACAGATATCAATGTGCGCTTTGTCAtgccggatgcggcgtgaa                                                        <  2:1109643‑M2/101‑19 (MQ=255)
                 aTTTCTCATCTGAATCACCTTGCTTTTGGCGAAAAAATCCCCGCAGAGCGGGGCTCAGACAGATATCAATGTGCGCTTTGTCAtgccggatgcggcgtgaa                                                        >  2:848471‑M2/1‑83 (MQ=255)
                  tttCTCATCTGAATCACCTTGCTTTTGGCGAAAAAATCCCCGCAGAGCGGGGCTCAGACAGATATCAATGTGCGCTTTGTCAtgccggatgcggcgtgaac                                                       >  2:814701‑M2/1‑82 (MQ=255)
                  tttCTCATCTGAATCACCTTGCTTTTGGCGAAAAAATCCCCGCAGAGCGGGGCTCAGACAGATATCAATGTGCGCTTTGTCAtgccggatgcggcgtgaac                                                       >  1:1163043‑M2/1‑82 (MQ=255)
                     ctcATCTGAATCACCTTGCTTTTGGCGAAAAAATCCCCGCAGAGCGGGGCTCAGACAGATATCAATGTGCGCTTTGTCAtgccggatgcggcgtgaacgcc                                                    <  2:1547096‑M2/101‑23 (MQ=255)
                      tcATCTGAATCACCTTGCTTTTGGCGAAAAAATCCCCGCAGAGCGGGGCTCAGACAGATATCAATGTGCGCTTTGTCAtgccggatgcggcgtgaacgcct                                                   >  2:799440‑M2/1‑78 (MQ=255)
                        aTCTGAATCACCTTGCTTTTGGCGAAAAAATCCCCGCAGAGCGGGGCTCAGACAGATATCAATGTGCGCTTTGTCAtgccggatgcggcgtgaacgcctta                                                 <  1:1074373‑M2/101‑26 (MQ=255)
                             aaTCACCTTGCTTTTGGCGAAAAAATCCCCGCAGAGCGGGGCTCAGACAGATATCAATGTGCGCTTTGTCAtgccggatgcggcgtgaacgccttatccgg                                            <  2:521755‑M2/101‑31 (MQ=255)
                             aaTCACCTTGCTTTTGGCGAAAAAATCCCCGCAGAGCGGGGCTCAGACAGATATCAATGTGCGCTTTGTCAtgccggatgcggcgtgaacgccttatccgg                                            <  2:1128752‑M2/101‑31 (MQ=255)
                               tCACCTTGCTTTTGGCGAAAAAATCCCCGCAGAGCGGGGCTCAGACAGATATCAATGTGCGCTTTGTCAtgccggatgcggcgtgaacgccttatccggcc                                          <  2:700223‑M2/101‑33 (MQ=255)
                                cACCTTGCTTTTGGCGAAAAAATCCCCGCAGAGCGGGGCTCAGACAGATATCAATGTGCGCTTTGTCAtgccggatgcggcgtgaacgccttatccggcct                                         >  1:73107‑M2/1‑68 (MQ=255)
                                  ccTTGCTTTTGGCGAAAAAATCCCCGCAGAGCGGGGCTCAGACAGATATCAATGTGCGCTTTGTCAtgccggatgcggcgtgaacgccttatccggcctac                                       >  2:94909‑M2/1‑66 (MQ=255)
                                  ccTTGCTTTTGGCGAAAAAATCCCCGCAGAGCGGGGCTCAGACAGATATCAATGTGCGCTTTGTCAtgccggatgcggcgtgaacgccttatccggcctac                                       <  2:94848‑M2/101‑36 (MQ=255)
                                    ttGCTTTTGGCGAAAAAATCCCCGCAGAGCGGGGCTCAGACAGATATCAATGTGCGCTTTGTCAtgccggatgcggcgtgaacgccttatccggcctacaa                                     <  2:411503‑M2/101‑38 (MQ=255)
                                    ttGCTTTTGGCGAAAAAATCCCCGCAGAGCGGGGCTCAGACAGATATCAATGTGCGCTTTGTCAtgccggatgcggcgtgaacgccttatcccgcctacaa                                     <  2:1697149‑M2/101‑38 (MQ=255)
                                     tGCTTTTGGCGAAAAAATCCCCGCAGAGCGGGGCTCAGACAGATATCAATGTGCGCTTTGTCAtgccggatgcggcgtgaacgccttatccggcctacaaa                                    <  1:1626281‑M2/101‑39 (MQ=255)
                                       cTTTTGGCGAAAAAATCCCCGCAGAGCGGGGCTCAGACAGATATCAATGTGCGCTTTGTCAtgccggatgcggcgtgaacgccttatccggcctacaaaaa                                  >  1:1560285‑M2/1‑61 (MQ=255)
                                        ttttGGCGAAAAAATCCCCGCAGAGCGGGGCTCAGACAGATATCAATGTGCGCTTTGTCAtgccggatgcggcgtgaacgccttatccggcctacaaaaac                                 <  1:44041‑M2/101‑42 (MQ=255)
                                                  aaaaTCCCCGCAGAGCGGGGCTCAGACAGATATCAATGTGTCTTTGTCAtgccggatgcggcgtgaacgccttatccggcctacaaaaacctgcaaattca                      >  1:302162‑M2/1‑49 (MQ=255)
                                                        cccGCAGAGCGGGGCTCAGACAGATATCAATGTGCGCTTTGTCAtgccggatgcggcgtgaacgccttatccggcctacaaaaacctgcaaattcaatata                 >  2:951072‑M2/1‑44 (MQ=255)
                                                             agagCGGGGCTCAGACAGATATCAATGTGCGCTTTGTCAtgccggatgcggcgtgaacgccttatccggcctacaaaaacctgcaaattcaatatattgca            >  1:1138014‑M2/1‑39 (MQ=255)
                                                                 cGGGGCTCAGACAGATATCAATGTGCGCTTTGTCAtgccggatgcggcgtgaacgccttatccggcctacaaaaacctgcaaattcaatatattgcaggat        >  2:502811‑M2/1‑35 (MQ=255)
                                                                  ggggCTCAGACAGATATCAATGTGCGCTTTGTCAtgccggatgcggcgtgaacgccttatccggcctacaaaaacctgcaaattcaatatattgcaggata       <  2:293878‑M2/101‑68 (MQ=255)
                                                                       tCAGACAGATATCAATGTGCGCTTTGTCAtgccggatgcggcgtgaacgccttatccggcctacaaaaacctgcaaattcaatatattgcaggatacgtgt  <  2:1238317‑M2/101‑73 (MQ=255)
                                                                                                   |                                                                        
TGCCAAATAGATCACAGATTTCTCATCTGAATCACCTTGCTTTTGGCGAAAAAATCCCCGCAGAGCGGGGCTCAGACAGATATCAATGTGCGCTTTGTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGCCGGATGCGGCG  >  64/23842‑23955

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.