New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? 1 21717 =24 (0.360)35 (0.530) 28/200 1.8 74.5% intergenic (–/–) –/– –/–
?182 = 6967 0 (0.000)intergenic (–/–) –/– –/–

AGCGAGATGTGGAAACGGCGAGGCACTTCACATTTTTTCGGATTATTGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  182/6867‑6967
                                                                                                    |                                                                                                    
aGCGAGATGTGGAAACGGCGAGGCACTTCACATTTTTTCGGATTATTGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGC                                                                                                      <  1:944293‑M1/101‑1 (MQ=255)
aGCGAGATGTGGAAACGGCGAGGCACTTCACATTTTTTCGGATTATTGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGC                                                                                                      <  1:1196711‑M1/101‑1 (MQ=255)
 gCGAGATGTGGAAACGGCGAGGCACTTCACATTTTTTCGGATTATTGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCa                                                                                                     <  1:682132‑M2/101‑2 (MQ=255)
   gagaTGTGGAAACGGCGAGGCACTTCACATTTTTTCGGATTATTGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCaaa                                                                                                   >  2:225804‑M2/1‑98 (MQ=255)
     gaTGTGGAAACGGCGAGGCACTTCACATTTTTTCGGATTATTGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCaaaat                                                                                                 <  1:1083195‑M1/101‑6 (MQ=255)
        gtgGAAACGGCGAGGCACTTCACATTTTTTCGGATTATTGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCaaaattgc                                                                                              >  1:141896‑M1/1‑93 (MQ=255)
        gtgGAAACGGCGAGGCACTTCACATTTTTTCGGATTATTGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCaaaattgc                                                                                              >  2:1024499‑M1/1‑93 (MQ=255)
         tgGAAACGGCGAGGCACTTCACATTTTTTCGGATTATTGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCaaaattgcc                                                                                             <  1:252694‑M1/101‑10 (MQ=255)
         tgGAAACGGCGAGGCACTTCACATTTTTTCGGATTATTGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCaaaattgcc                                                                                             >  2:315724‑M1/1‑92 (MQ=255)
           gAAACGGCGAGGCACTTCACATTTTTTCGGATTATTGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCaaaattgcctg                                                                                           <  1:405922‑M1/101‑12 (MQ=255)
             aaCGGCGAGGCACTTNACATTTTTTCGGATTATTGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCaaaattgcctgat                                                                                         <  2:915658‑M1/101‑14 (MQ=255)
             aaCGGCGAGGCACTTCACATTTTTTCGGATTATTGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCaaaattgcctgat                                                                                         <  2:536948‑M1/101‑14 (MQ=255)
             aaCGGCGAGGCACTTCACATTTTTTCGGATTATTGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCaaaattgcctgat                                                                                         <  1:556599‑M1/101‑14 (MQ=255)
             aaCGGCGAGGCACTTCACATTTTTTCGGATTATTGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCaaaattgcctgat                                                                                         <  1:1256122‑M1/101‑14 (MQ=255)
              aCGGCGAGGCACTTCACATTTTTTCGGATTATTGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGTTGATAAAAGCaaaattgcctgatg                                                                                        <  2:1252170‑M1/101‑15 (MQ=255)
              aCGGCGAGGCACTTCACATTTTTTCGGATTATTGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCaaaattgcctgatg                                                                                        <  1:1683935‑M1/101‑15 (MQ=255)
                       cACTTCACATTTTTTCGGATTATTGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgct                                                                               <  1:1595598‑M1/101‑24 (MQ=255)
                        aCTTCACATTTTTTCGGATTATTGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgctt                                                                              >  2:467589‑M1/1‑77 (MQ=255)
                        aCTTCACATTTTTTCGGATTATTGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgctt                                                                              >  2:1613062‑M1/1‑77 (MQ=255)
                        aCTTCACATTTTTTCGGATTATTGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgctt                                                                              <  2:269827‑M1/101‑25 (MQ=255)
                         cTTCACATTTTTTCGGATTATTGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgctta                                                                             <  1:1000679‑M1/101‑26 (MQ=255)
                         cTTCACATTTTTTCGGATTATTGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgctta                                                                             >  2:1192890‑M1/1‑76 (MQ=255)
                         cTTCACATTTTTTCGGATTATTGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgctta                                                                             >  1:1128635‑M1/1‑76 (MQ=255)
                         cTTCACATTTTTTCGGATTATTGCAAATGAGGATAAAAAAACCGGGCTTCCCCGGTTTCAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgctta                                                                             >  2:308929‑M1/1‑76 (MQ=255)
                         cTTCACATTTTTTCGGATTATTGCAAATGAGGATAAAAAAACCGGGCTTCCCCGGTTTCAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgctta                                                                             >  1:1671736‑M1/1‑76 (MQ=255)
                          ttCACATTTTTTCGGATTATTGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgcttat                                                                            <  1:996418‑M1/101‑27 (MQ=255)
                            cacaTTTTTTCGGATTATTGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgcttatca                                                                          <  1:820741‑M1/101‑29 (MQ=255)
                                 tttttCGGATTATTGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgcttatcaggcct                                                                     <  1:1043956‑M1/101‑34 (MQ=255)
                                 tttttCGGATTATTGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgcttatcaggcct                                                                     <  1:1213793‑M1/101‑34 (MQ=255)
                                   tttCGGATTATTGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgcttatcaggcctac                                                                   >  1:1394440‑M1/1‑66 (MQ=255)
                                   tttCGGATTATTGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGGGATGATAAAAGCaaaattgcttgatgcgctacgcttatctggcttac                                                                   >  1:256250‑M1/1‑66 (MQ=255)
                                     tCGGATTATTGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacat                                                                 <  2:1588484‑M1/101‑38 (MQ=255)
                                     tCGGATTATTGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacat                                                                 <  1:1498127‑M1/101‑38 (MQ=255)
                                     tCGGATTATTGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacat                                                                 <  2:1689744‑M1/101‑38 (MQ=255)
                                      cGGATTATTGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGTTGATAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatt                                                                >  1:670001‑M1/1‑63 (MQ=255)
                                      cGGATTATTGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatt                                                                >  1:1650751‑M1/1‑63 (MQ=255)
                                         attattGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGCGATGATAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatttcc                                                             >  1:1061934‑M1/1‑60 (MQ=255)
                                           tattGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatttcctt                                                           <  1:1397366‑M2/101‑44 (MQ=255)
                                            attGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatttccttg                                                          >  2:258063‑M2/1‑57 (MQ=255)
                                                  aaTGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatttccttgcaatat                                                    <  1:227482‑M2/101‑51 (MQ=255)
                                                   aTGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatttccttgcaatatg                                                   >  2:532919‑M2/1‑50 (MQ=255)
                                                       ggATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatttccttgcaatatgtgca                                               >  1:126596‑M2/1‑46 (MQ=255)
                                                       ggATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatttccttgcaatatgtgca                                               <  2:14863‑M2/101‑56 (MQ=255)
                                                        gATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatttccttgcaatatgtgcat                                              >  1:467594‑M2/1‑45 (MQ=255)
                                                             aaaaaCCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatttccttgcaatatgtgcattactt                                         <  2:60827‑M2/101‑62 (MQ=255)
                                                              aaaaCCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatttccttgcaatatgtgcattacttt                                        <  2:1388483‑M2/101‑63 (MQ=255)
                                                                  ccGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatttccttgcaatatgtgcattactttgtag                                    >  2:47164‑M2/1‑35 (MQ=255)
                                                                    gggTTTCCCCGGTTTCAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatttccttgcaatatgtgcattactttgtaggc                                  >  1:1204664‑M2/1‑33 (MQ=255)
                                                                        ttCCCCGGTTTCAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatttccttgcaatatgagcattactttgtaggccgga                              <  2:48941‑M2/101‑73 (MQ=255)
                                                                         tCCCCGGTTTCAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatttccttgcaatatgtgcattactttgtaggccggat                             >  1:313198‑M2/1‑28 (MQ=255)
                                                                         tCCCCGGTTTCAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatttccttgcaatatgtgcattactttgtaggccggat                             >  1:737487‑M2/1‑28 (MQ=255)
                                                                           cccGGTTTCAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatttccttgcaatatgtgcattactttgtaggccggataa                           <  1:842097‑M2/101‑76 (MQ=255)
                                                                           cccGGTTTCAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatttccttgcaatatgtgcattactttgtaggccggataa                           <  2:671048‑M2/101‑76 (MQ=255)
                                                                             cGGTTTCAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatttccttgcaatatgtgcattactttgtaggccggataagg                         >  2:214427‑M2/1‑24 (MQ=255)
                                                                             cGGTTTCAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatttccttgcaatatgtgcattactttgtaggccggataagg                         >  1:1119953‑M2/1‑24 (MQ=255)
                                                                              ggTTTCAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatttccttgcaatatgtgcattactttgtaggccggataaggc                        <  1:986664‑M2/101‑79 (MQ=255)
                                                                                tttCAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatttccttgcaatatgtgcattactttgtaggccggataaggcgt                      <  2:589834‑M2/101‑81 (MQ=255)
                                                                                 ttCAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatttccttgcaatatgtgcattactttgtaggccggataaggcgtt                     <  1:1602710‑M2/101‑82 (MQ=255)
                                                                                  tCAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatttccttgcaatatgtgcattactttgtaggccggataaggcgttc                    <  2:72810‑M2/101‑83 (MQ=255)
                                                                                   cAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatttccttgcaatatgtgctttactttgtaggcccgataaggcgttct                   >  2:418584‑M2/1‑18 (MQ=255)
                                                                                   cAGAGTGATGATAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatttccttgcaatatgtgcattactttgtagggcggataaggcgttca                   >  1:1440493‑M2/1‑18 (MQ=255)
                                                                                    agagTGATGATAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatttccttgcaatatgtgcattactttgtaggccggataaggcgttcac                  >  1:832591‑M2/1‑17 (MQ=255)
                                                                                       gTGATGATAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatttccttgcaatatgtgcattactttgtaggccggataagtcgttcacgcc               <  2:1381260‑M2/101‑88 (MQ=255)
                                                                                       gTGATGATAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatttccttgcaatatgtgcattactttgtaggccggataaggcgttcacgcc               <  2:496952‑M2/101‑88 (MQ=255)
                                                                                       gTGATGATAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatttccttgcaatatgtgcattactttgtaggccggataaggcgttcacgcc               <  2:692051‑M2/101‑88 (MQ=255)
                                                                                          atgatAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatttccttgcaatatgtgcattactttgtaggccggataaggcgttcacgccgca            <  2:36533‑M2/101‑91 (MQ=255)
                                                                                           tgatAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatttccttgcaatatgtgcattactttgtaggccggataaggcgttcacgccgcat           <  1:155927‑M2/101‑92 (MQ=255)
                                                                                             atAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatttccttgcaatatgtgcattactttgtaggccggataaggcgttcacgccgcatcc         >  2:1663490‑M2/1‑8 (MQ=255)
                                                                                              tAAAAGCaaaattgcctgatgcgctacgcttatcaggcctacatttccttgcaatatgtgcattactttgtaggccggataaggcgttcacgccgcatccg        <  2:952753‑M2/101‑95 (MQ=255)
                                                                                                   gCaaaattgcctgatgcgctacgcttatcaggcctacatttccttgcaatatgtgcattactttgtaggccggataaggcgttcacgccgcatccggcatg   <  2:708437‑M2/101‑100 (MQ=255)
                                                                                                    caaaattgcctgatgcgctacgcttatcaggcctactttctcctgcaatatattgaattttcgatgttttgtaggccggataaggcgttctcgccgcatcc  <  1:1389496‑M1/101‑101 (MQ=255)
                                                                                                    |                                                                                                    
AGCGAGATGTGGAAACGGCGAGGCACTTCACATTTTTTCGGATTATTGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  182/6867‑6967

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.