New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? 25 = 399280 (0.000)57 (0.860)
+T
45/198 0.3 50.9% intergenic (–/–) –/– –/–
?62 21299 = 111 (1.670)intergenic (–/–) –/– –/–

TGTGACCACAAGTTTTTCTTCGCTTTTTCGTATGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGA  >  25/39828‑39931
                                                                                                    |                                                                                                  
tgtgACCACAAGTTTTTCTTCGCTTTTTCGTATGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAggg                                                                                                    >  2:1117729/1‑101 (MQ=255)
tgtgACCACAAGTTTTTCTTCGCTTTTTCGTATGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAggg                                                                                                    >  2:304201/1‑101 (MQ=255)
 gtgACCACAAGTTTTTCTTCGCTTTTTCGTATGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGt                                                                                                   <  2:470368‑M1/101‑2 (MQ=255)
 gtgACCACAAGTTTTTCTTCGCTTTTTCGTATGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGt                                                                                                   >  2:1607775‑M1/1‑100 (MQ=255)
    aCCACAAGTTTTTCTTCGCTTTTTCGTATGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGtgac                                                                                                >  1:1037120‑M1/1‑97 (MQ=255)
      cacaAGTTTTTCTTCGCTTTTTCGTATGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGtgacat                                                                                              >  1:540155‑M1/1‑95 (MQ=255)
           gTTTTTCTTCGCTTTTTCGTATGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGtgacatgacgc                                                                                         >  2:34686‑M1/1‑90 (MQ=255)
           gTTTTTCTTCGCTTTTTCGTATGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGtgacatgacgc                                                                                         >  2:1576216‑M1/1‑90 (MQ=255)
                tcttcGCTTTTTCGTATGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGtgacatgacgcagtat                                                                                    <  1:1158019‑M1/101‑17 (MQ=255)
                tcttcGCTTTTTCGTATGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGtgacatgacgcagtat                                                                                    <  2:993292‑M1/101‑17 (MQ=255)
                tcttcGCTTTTTCGTATGAAGATACTGTCATCAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGtgacatgacgcagtat                                                                                    <  1:1474851‑M1/101‑17 (MQ=255)
                 cttcGCTTTTTCGTATGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGtgacatgacgcagtatg                                                                                   >  2:1035809‑M1/1‑84 (MQ=255)
                      cTTTTTCGTATGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGtgacatgacgcagtatggcggt                                                                              <  2:1639891‑M1/101‑23 (MQ=255)
                        ttttCGTATGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGtgacatgacccagtatggcggtag                                                                            <  2:996438‑M1/101‑25 (MQ=255)
                              tATGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGtgacatgacgcagtatggcggtagcattgt                                                                      >  2:1687565‑M1/1‑71 (MQ=255)
                               aTGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGtgacatgacgcagtatggcggtagcattgtt                                                                     <  1:1120052‑M1/101‑32 (MQ=255)
                               aTGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGtgacatgacgcagtatggcggtagcattgtt                                                                     <  1:1375055‑M1/101‑32 (MQ=255)
                               aTGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGagacatgacgcagtatggcggtagcattgtt                                                                     >  2:1223462‑M1/1‑70 (MQ=255)
                                tGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACTGGCGGCGCGTCAGGGggacatgacgcagtatggcggtagcattgtac                                                                    >  1:212650‑M1/1‑69 (MQ=255)
                                tGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGtgacatgacgcagtatggcggtagcattgttc                                                                    >  1:1106882‑M1/1‑69 (MQ=255)
                                tGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGtgacatgacgcagtatggcggtagcattgttc                                                                    <  2:540150‑M1/101‑33 (MQ=255)
                                  gatctactgTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGtgacatgacgcagtatggcggtagcattgttcag                                                                  <  2:118003‑M1/97‑35 (MQ=255)
                                   aGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGtgacatgacgcagtatggcggtagcattgttcagg                                                                 >  2:442819‑M1/1‑66 (MQ=255)
                                     aTACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGtgacatgacgcagtatggcggtagcattgttcagggt                                                               >  1:780918‑M1/1‑64 (MQ=255)
                                      tACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGtgacatgacgcagtatggcggtagcattgttcagggtt                                                              >  2:806085‑M1/1‑63 (MQ=255)
                                       aCTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGtgacatgacgcagtatggcggtagcattgttcagggttc                                                             >  1:1546298‑M1/1‑62 (MQ=255)
                                       aCTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGtgacatgacgcagtatggcggtagcattgttcagagatc                                                             >  1:118003‑M1/1‑62 (MQ=255)
                                         tGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGtgacatgacgcagtatggcggtagcattgttcagggttcag                                                           >  2:1522633‑M1/1‑60 (MQ=255)
                                             aTTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGtgacatgacgcagtatggcggtagcattgttcagggttcagccgg                                                       >  1:454265‑M1/1‑56 (MQ=255)
                                               tAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGtgacatgacgcagtatggcggtagcattgttcagggttcagccgggg                                                     >  2:1605443‑M1/1‑54 (MQ=255)
                                                aaaaTAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGtgacatgacgcagtatggcggtagcattgttcagggttcagccggggt                                                    <  2:395019‑M1/101‑49 (MQ=255)
                                                    taataGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGtgacatgacgcagtatggcggtagcattgttcagggttcagccggggtacgt                                                >  2:1496754‑M1/1‑49 (MQ=255)
                                                      ataGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGtgacatgacgcagtatggcggtagcattgttcagggttcagccggggtacgtat                                              <  2:1287841‑M1/101‑55 (MQ=255)
                                                      ataGAAAAGGATTTTACGATGAGCGGAAAACCGGCGCCGCGGCAGGGtgacatgacgcaggatggcggtagcattgttcagggttcagccgggggacgtat                                              >  1:819107‑M1/1‑47 (MQ=255)
                                                      ataGAAAAGGATTTTACGATGAGCGGAAAACCGGCGACGCGTCAGGGtgacaagacgcagtatggcggtagcattgttcagggttcagccggggtacgtat                                              >  1:163840‑M1/1‑47 (MQ=255)
                                                        aGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGtgacatgacgcagtatggcggtagcattgttcagggttcagccggggtacgtattg                                            >  1:717917‑M1/1‑45 (MQ=255)
                                                        aGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGtgacatgacgcagtatggcggtagcattgttcagggttcagccggggtacgtattg                                            <  2:1602531‑M1/101‑57 (MQ=255)
                                                        aGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGtgacatgacgcagtatggcggtagcattgttcagggttcagccggggtacgtattg                                            >  2:271639‑M1/1‑45 (MQ=255)
                                                        aGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGtgacatgacgcagtatggcggtagcattgttcagggttcagccggggtacgtattg                                            >  2:1065595‑M1/1‑45 (MQ=255)
                                                        aGAAAAGGATTGTACGATGAGCGGAAATCCGGCGGCGCGTCAGGGtgacatgactcagtatggcggtagcattgttcagggttcagccggggtacgtattg                                            <  1:616624‑M1/101‑57 (MQ=255)
                                                          aaaaGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGtgacatgacgcagtatggcggtagcattgttcagggttcagccggggtacgtattggt                                          >  1:789832‑M1/1‑43 (MQ=255)
                                                          aaaaGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGtgacatgacgcagtatggcggtagcattgttcagggttcagccggggtacgtattggt                                          >  1:771664‑M1/1‑43 (MQ=255)
                                                            aaGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGtgacatgacgcagtatggcggtagcattgttcagggttcagccggggtacgtattggtgc                                        >  2:1597225‑M1/1‑41 (MQ=255)
                                                            aaGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGtgacatgacgcagtatggcggtagcattgttcagggttcagccggggtacgtattggtgc                                        <  1:106477‑M1/101‑61 (MQ=255)
                                                             aGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGtgacatgacgcagtatggcggtagcattgttcagggttcagccggggtacgtattggtgcc                                       >  1:1529318‑M1/1‑40 (MQ=255)
                                                                  tttACGATGAGCGGAAAACCGGCGGCGCGTCAGGGtgacatgacgcagtatggcggtagcattgttcagggttcagccggggtacgtattggtgcccccac                                  <  1:1117734‑M1/101‑67 (MQ=255)
                                                                   ttACGATGAGCGGAAAACCGGCGGCGCGTCAGGGtgacatgacgcagtatggcggtagcattgttcagggttcagccggggtacgtattggtgcccccacc                                 >  1:1410143‑M1/1‑34 (MQ=255)
                                                                         tGAGCGGAAAACCGGCGGCGCGTCAGGGtgacatgacgcagtatggcgggagcattgttcagggttcagccggggaacgtattggtgcccccaccggcgtg                           >  2:891283‑M1/1‑28 (MQ=255)
                                                                              ggAAAACCGGCGGCGCGTCAGGGtgacatgacgcagtatggcggtagcattgttcagggttcagccggggtacgtattggtgcccccaccggcgtggcctg                      >  2:236043‑M1/1‑23 (MQ=255)
                                                                                aaaaCCGGCGGCGCGTCAGGGtgacatgacgcagtatggcggtagcattgttcagggttcagccggggtacgtattggtgcccccaccggcgtggcctgtt                    <  2:1228402‑M1/101‑81 (MQ=255)
                                                                                 aaaCCGGCGGCGCGTCAGGGtgacatgacgcagtatggcggtagcattgttcagggttcagccggggtacgtattggtgcccccaccggcgtggcctgttc                   <  2:284112‑M1/101‑82 (MQ=255)
                                                                                     cggcggCGCGTCAGGGtgacatgacgcagtatggcggtagcattgttcagggttcagccggggtacgtattggtgcccccaccggcgtggcctgttcggtg               <  1:176795‑M1/101‑86 (MQ=255)
                                                                                      ggcggcGCGTCAGGGtgacatgacgcagtatggcggtagcattgttcagggttcagccggggtacgtattggtgcccccaccggcgtggcctgttcggtgt              <  2:720875‑M1/101‑87 (MQ=255)
                                                                                      ggcggcGCGTCAGGGtgacatgacgcagtatggcggtagcattgttcagggttcagccggggtacgtattggtgcccccaccggcgtggcctgttcggtgt              >  1:696103‑M1/1‑15 (MQ=255)
                                                                                        cggcgCGTCAGGGtgacatgacgcagtatggcggtagcattgttcagggttcagccggggtacgtattggtgcccccaccggcgtggcctgttcggtgtgc            <  1:304201‑M1/101‑89 (MQ=255)
                                                                                           cgcgTCAGGGtgacatgacgcagtatggcggtagcattgttcagggttcagccggggtacgtattggtgcccccaccggcgtggcctgttcggtgtgcccc         <  2:356186‑M1/101‑92 (MQ=255)
                                                                                            gcgTCAGGGtgacatgacgcagtatggcggtagcattgttcagggttcagccggggtacgtattggtgcccccaccggcgtggcctgttcggtgtgccccg        <  2:1366098‑M1/101‑93 (MQ=255)
                                                                                                cAGGGtgacatgacgcagtatggcggtagcattgttcagggttcagccggggtacgtattggtgcccccaccggcgtggcctgttcggtgtgccccggcgg    >  2:1183794‑M1/1‑5 (MQ=255)
                                                                                                 aGGGtgacatgacgcagtatggcggtagcattgttcagggttcagccggggtacgtattggtgcccccaccggcgtggcctgttcggtgtgccccggcggg   <  1:1607781‑M1/101‑98 (MQ=255)
                                                                                                 aGGGtgacatgacgcagtatggcggtagcattgttcagggttcagccggggtacgtattggtgcccccaccggcgtggcctgttcggtgtgccccggcggg   <  2:1055425‑M1/101‑98 (MQ=255)
                                                                                                  gggtgacatgacgcagtatggcggtagcattgttcagggttcagccggggtacgtattggtgcccccaccggcgtggcctgttcggtgtgccccggcgggg  <  2:652082‑M1/101‑99 (MQ=255)
                                                                                                    |                                                                                                  
TGTGACCACAAGTTTTTCTTCGCTTTTTCGTATGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGA  >  25/39828‑39931

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.