New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? 2 55659 =45 (0.680)30 (0.490) 19/184 2.6 59.2% intergenic (–/–) –/– –/–
?70 = 22841 0 (0.000)intergenic (–/–) –/– –/–

ATGTAGGTCGATACACTATTCTTTCAGGCTGCTGCAATAGCGCACTGAAAGGTGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAACTCCAGGAGCTTACAATAGTAAGTGACTGGGGTGAACGAACGTAGCCGCAGCACATGCAACTTGAAATACGACGAGTAAATCGTTTGCGTGTT  >  2/55560‑55759
                                                                                                   |                                                                                                     
aaatcaaggcctggctggcataatccctactccactcctgctatgcttaacaaattattcatagactctaaataattcgagttgcaggaaggcggcaaaCg                                                                                                      <  1:1130758‑M1/2‑1 (MQ=255)
aaatcaaggcctggctggcataatccctactccactcctgctatgcttaacaaattattcatagactctaaataattcgagttgcaggaaggcggcaaaCg                                                                                                      <  2:857035‑M1/2‑1 (MQ=255)
 aatcaaggcctggctggcataatccctactccactcctgctatgcttaacaaattattcatagactctaaataattcgagttgcaggaaggcggcaaaCGa                                                                                                     <  1:1324324‑M1/3‑1 (MQ=255)
  gTAGGTCGATACACTATTCTTTCAGGCTGCTGCAATAGCGCACTGAAAGGTGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAg                                                                                                    <  1:76968/101‑1 (MQ=255)
   tcaaggcctggctggcataatccctactccactcctgctatgcttaacaaattattcatagactctaaataattcgagttgcaggaaggcggcaaaCGAGt                                                                                                   >  1:1710382‑M1/97‑101 (MQ=255)
       tCGATACACTATTCTTTCAGGCTGCTGCAATAGCGCACTGAAAGGTGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAAc                                                                                              <  1:464538/101‑1 (MQ=255)
       tCGATACACTATTCTTTCAGGCTGCTGCAATAGCGCACTGAAAGGTGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAAc                                                                                              <  1:1348276/101‑1 (MQ=255)
       ggcctggctggcataatccctactccactcctgctatgcttaacaaattattcatagactctaaataattcgagttgcaggaaggcggcaaaCGAGTgaag                                                                                               <  1:1688102‑M1/9‑2 (MQ=255)
        cGATACACTATTCTTTCAGGCTGCTGCAATAGCGCACTGAAAGGTGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAACt                                                                                             >  1:1066508/1‑101 (MQ=255)
        cGATACACTATTCTTTCAGGCTGCTGCAATAGCGCACTGAAAGGTGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAACt                                                                                             >  2:675300/1‑101 (MQ=255)
           tACACTATTCTTTCAGGCTGCTGCAATAGCGCACTGAAAGGTGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAACTCCa                                                                                          <  2:1532523/101‑1 (MQ=255)
            acacTATTCTTTCAGGCTGCTGCAATAGCGCACTGAAAGGTGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAACTCCAg                                                                                         >  2:1687111/1‑101 (MQ=255)
              acTATTCTTTCAGGCTGCTGCAATAGCGCACTGAAAGGTGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAACTCCAGGa                                                                                       >  1:162681/1‑101 (MQ=255)
               cTATTCTTTCAGGCTGCTGCAATAGCGCACTGAAAGGTGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAACTCCAGGAg                                                                                      >  2:385007/1‑101 (MQ=255)
               cTATTCTTTCAGGCTGCTGCAATAGCGCACTGAAAGGTGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAACTCCAGGAg                                                                                      >  1:959753/1‑101 (MQ=255)
                 aTTCTTTCAGGCTGCTGCAATAGCGCACTGAAAGGTGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAACTCCAGGAGCt                                                                                    >  2:715215/1‑101 (MQ=255)
                 aTTCTTTCAGGCTGCTGCAATAGCGCACTGAAAGGTGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAACTCCAGGAGCt                                                                                    >  2:1513947/1‑101 (MQ=255)
                  ttCTTTCAGGCTGCTGCAATAGCGCACTGAAAGGTGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAACTCCAGGAGCtt                                                                                   <  1:561986/101‑1 (MQ=255)
                  ttCTTTCAGGCTGCTGCAATAGCGCACTGAAAGGTGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAACTCCAGGAGCtt                                                                                   >  2:561981/1‑101 (MQ=255)
                   tCTTTCAGCCTGCTGCAATAGCGCACTGAAAGGTGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAACTCCAGGAGCTTa                                                                                  <  2:1474541/101‑1 (MQ=255)
                   ataatccctactccactcctgctatgcttaacaaattattcatagactctaaataattcgagttgcaggaaggcggcaaaCGAGTGAAGCCCCAGGAGCtt                                                                                   <  1:1037280‑M1/21‑1 (MQ=255)
                   ataatccctactccactcctgctatgcttaacaaattattcatagactctaaataattcgagttgcaggaaggcggcaaaCGAGTGAAGCCCCAGGAGCtt                                                                                   <  2:658643‑M1/21‑1 (MQ=255)
                   ataatccctactccactcctgctatgcttaacaaattattcatagaccctaaataattcgagttgcaggaaggcggcaaaCGAGTGAAGCCCCAGGAGCtt                                                                                   >  1:1448454‑M1/81‑101 (MQ=255)
                    taatccctactccactcctgctatgcttaacaaattattcatagactctaaataattcgagttgcaggaaggcggcaaaCGAGTGAAGCCCCAGGAGCTTa                                                                                  >  1:329175‑M1/80‑101 (MQ=255)
                    cTTTCAGGCTGCTGCAATAGCGCACTGAAAGGTGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAACTCCAGGAGCTTAc                                                                                 <  1:1327607/101‑1 (MQ=255)
                     tttCAGGCTGCTGCAATAGCGCACTGAAAGGTGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAACTCCAGGAGCTTACa                                                                                >  1:358849/1‑101 (MQ=255)
                     aatccctactccactcctgctatgcttaacaaattattcatagactctaaataattcgagttgcaggaaggcggcaaaCGAGTGAAGCCCCAGGAGCTTAc                                                                                 >  2:119967‑M1/79‑101 (MQ=255)
                      ttCAGGCTGCTGCAATAGCGCACTGAAAGGTGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAACTCCAGGAGCTTACaa                                                                               <  1:1616202/101‑1 (MQ=255)
                        cAGGCTGCTGCAATAGCGCACTGAAAGGTGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAACTCCAGGAGCTTACAATa                                                                             >  1:1158204/1‑101 (MQ=255)
                        cAGGCTGCTGCAATAGCGCACTGAAAGGTGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAACTCCAGGAGCTTACAATa                                                                             >  1:538762/1‑101 (MQ=255)
                          ggCTGCTGCAATAGCGCACTGAAAGGTGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAACTCCAGGAGCTTACAATAGt                                                                           >  2:1424553/1‑101 (MQ=255)
                          ctactccactcctgctatgcttaacaaattattcatagactctaaataattcgagttgcaggaaggcggcaaaCGAGTGAAGCCCCAGGAGCttacataag                                                                            <  1:1023753‑M1/28‑5 (MQ=255)
                          ctactccactcctgctatgcttaacaaattattcatagactctaaataattcgagttgcaggaaggcggcaaaCGAGTGAAGCCCCAGGAGCttacataag                                                                            >  2:784571‑M1/74‑97 (MQ=255)
                          ctactccactcctgctatgcttaacaaattattcatagactctaaataattcgagttgcaggaaggcggcaaaCGAGTGAAGCCCCAGGAGCttacataag                                                                            <  1:1716825‑M1/28‑5 (MQ=255)
                          ctactccactcctgctatgcttaacaaattattcatagactctaaataattcgagttgcaggaaggcggcaaaCGAGTGAAGCCCCAGGAGCttacataag                                                                            <  2:459047‑M1/28‑5 (MQ=255)
                           tactccactcctgctatgcttaacaaattattcatagactctaaataattcgagttgcaggaaggcggcaaaCGAGTGAAGCCCCAGGAGcttacataagt                                                                           <  2:734467‑M1/29‑6 (MQ=255)
                            ctgctgCAATAGCGCACTGAAAGGTGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAACTCCAGGAGCTTACAATAGTaa                                                                         <  1:1379460/101‑1 (MQ=255)
                             tgctgcAATAGCGCACTGAAAGGTGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAACTCCAGGAGCTTACAATAGTAAg                                                                        <  1:141711/101‑1 (MQ=255)
                              gctgcAATAGCGCACTGAAAGGTGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAACTCCAGGAGCTTACAATAGTAAGt                                                                       <  2:843521/101‑1 (MQ=255)
                                   tcctgctatgcttaacaaattattcatagactctaaataattcgagttgcaggaaggcggcaaaCGAGTGAAGCCCCAGGAGCTTACATAAGTAAGTGACt                                                                   >  1:983696‑M1/65‑101 (MQ=255)
                                   tcctgctatgcttaacaaattattcatagactctaaataattcgagttgcaggaaggcggcaaaCGAGTGAAGCCCCAGGAGCTTACATAAGTAAGTGACt                                                                   >  2:1172054‑M1/65‑101 (MQ=255)
                                   tcctgctatgcttaacaaattattcatagactctaaataattcgagttgcaggaaggcggcaaaCGAGTGAAGCCCCAGGAGCTTACATAAGTAAGTGACt                                                                   >  2:1716819‑M1/65‑101 (MQ=255)
                                     tAGCGCACTGAAAGGTGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAACTCCAGGAGCTTACAATAGTAAGTGACTggg                                                                >  2:1665882/1‑101 (MQ=255)
                                      tgctatgcttaacaaattattcgtagactctaaataattcgagttgcaggaaggcggcaaaCGAGTGAAGCCCCAGGAGCTTACATAAGTAAGTGACTggg                                                                <  2:1119655‑M1/40‑1 (MQ=255)
                                      tgctatgcttaacaaattattcatagactctaaataattcgagttgcaggaaggcggcaaaCGAGTGAAGCCCCAGGAGCTTACATAAGTAAGTGACTggg                                                                <  1:1440051‑M1/40‑1 (MQ=255)
                                      tgctatgcttaacaaattattcatagactctaaataattcgagttgcaggaaggcggcaaaCGAGTGAAGCCCCAGGAGCTTACATAAGTAAGTGACTggg                                                                >  2:110411‑M1/62‑101 (MQ=255)
                                      aGCGCACTGAAAGGTGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAACTCCAGGAGCTTACAATAGTAAGTGACTgggg                                                               <  2:162681/101‑1 (MQ=255)
                                       gctatgcttaacaaattattcatagactctaaataattcgagttgcaggaaggcggcaaaCGAGTGAAGCCCCAGGAGCTTACATAAGTAAGTGACTgggg                                                               >  1:1217197‑M1/61‑101 (MQ=255)
                                        ctatgcttaacaaattattcatagactctaaataattcgagttgcaggaaggcggcaaaCGAGTGAAGCCCCAGGAGCTTACATAAGTAAGTGACTGGGGt                                                              <  1:700493‑M1/42‑1 (MQ=255)
                                        ctatgcttaacaaattattcatagactctaaataattcgagttgcaggaaggcggcaaaCGAGTGAAGCCCCAGGAGCTTACATAAGTAAGTGACTGGGGt                                                              <  2:1134031‑M1/42‑1 (MQ=255)
                                          cACTGAAAGGTGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAACTCCAGGAGCTTACAATAGTAAGTGACTGGGGTgaa                                                           <  1:514052/101‑1 (MQ=255)
                                          cACTGAAAGGTGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAACTCCAGGAGCTTACAATAGTAAGTGACTGGGGTgaa                                                           >  1:75379/1‑101 (MQ=255)
                                          atgcttaacaaattattcatagactctaaataattcgagttgcaggaaggcggcaaaCGAGTGAAGCCCCAGGAGCTTACATAAGTAAGTGactgggggga                                                            <  2:187365‑M1/44‑4 (MQ=255)
                                          atgcttaacaaattattcatagactctaaataattcgagttgcaggaaggcggcaaaCGAGTGAAGCCCCAGGAGCTTACATAAGTAAGTGACTGGGGTga                                                            <  2:1631632‑M1/44‑1 (MQ=255)
                                            gcttaacaaattattcatagactctaaataattcgagttgcaggaaggcggcaaaCGAGTGAAGCCCCAGGAGCTTACATAAGTAAGTGACTGGGGTgaac                                                          >  1:658648‑M1/56‑101 (MQ=255)
                                             cttaacaaattattcatagactctaaataattcgagttgcaggaaggcggcaaaCGAGTGAAGCCCCAGGAGCTTACATAAGTAAGTGACTGGGGTgaacg                                                         <  1:507742‑M1/47‑1 (MQ=255)
                                             cttaacaaattattcatagactctaaataattcgagttgcaggaaggcggcaaaCGAGTGAAGCCCCAGGAGCTTACATAAGTAAGTGACTGGGGTgaacg                                                         <  2:703023‑M1/47‑1 (MQ=255)
                                               taacaaattattcatagactctaaataattcgagttgcaggaaggcggcaaaCGAGTGAAGCCCCAGGAGCTTACATAAGTAAGTGACTGGGGTgaacgaa                                                       <  2:354525‑M1/49‑1 (MQ=255)
                                               aaaGGTGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAACTCCAGGAGCTTACAATAGTAAGTGACTGGGGTgaacgaac                                                      <  2:75379/101‑1 (MQ=255)
                                               aaaGGTGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAACTCCAGGAGCTTACAATAGTAAGTGACTGGGGTgaacgaac                                                      <  1:691077/101‑1 (MQ=255)
                                                 acaaattattcatagactctaaataattcgagttgcaggaaggcggcaaaCGAGTGAAGCCCCAGGAGCTTACATAAGTAAGTGACTGGGgtgaacgaatg                                                     <  1:1315309‑M1/51‑3 (MQ=255)
                                                    tGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAACTCCAGGAGCTTACAATAGTAAGTGACTGGGGTGAACGAACGTAGc                                                 >  2:1703665/1‑101 (MQ=255)
                                                    tGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAACTCCAGGAGCTTACAATAGTAAGTGACTGGGGTGAACGAACGTAGc                                                 >  1:1076295/1‑101 (MQ=255)
                                                    tGATGTTTGTTTACTCAATGGATTTCGTGTTGCAGGAAGGCGGAAAGCGAGTGAACTCCAGGAGCTTACTATAGTAAGTGACTGGGGTGAACGAACGTAGc                                                 >  2:1393422/1‑101 (MQ=25)
                                                    aattattcatagactctaaataattcgagttgcaggaaggcggcaaaCGAGTGAAGCCCCAGGAGCTTACATAAGTAAGTGACTggggtgaacgaatgcag                                                  <  1:623369‑M1/54‑6 (MQ=255)
                                                     gATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAACTCCAGGAGCTTACAATAGTAAGTGACTGGGGTGAACGAACGTAGcc                                                <  2:1197185/101‑1 (MQ=255)
                                                     attattcatagactctaaataattcgagttgcaggaaggcggcaaaCGAGTGAAGCCCCAGGAGCTTACATAAGTAAGTGACtggggtgaacgaatgcagc                                                 >  1:459052‑M1/47‑95 (MQ=255)
                                                      aTGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAACTCCAGGAGATTACAATAGTAAGTGACTGGGGTGAACGAACGTAGCCg                                               >  2:860566/1‑101 (MQ=255)
                                                         tttgtttACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAACTCCAGGAGCTTACAATAGTAAGTGACTGGGGTGAACGAACGTAGCCgcag                                            >  1:148790/1‑101 (MQ=255)
                                                           catagactctaaataattcgagttgcaggaaggcggcaaaCGAGTGAAGCCCCAGGAGCTTACATAAGTAAGTGACTGGGGTGAACGAATGCAGCCgcagc                                           >  1:1133346‑M1/41‑101 (MQ=255)
                                                             tttACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAACTCCAGGAGCTTACAATAGTAAGTGACTGGGGTGAACGAACGTAGCCGCAGcaca                                        >  2:283380/1‑101 (MQ=255)
                                                             tagactctaaataattcgagttgcaggaaggcggcaaaCGAGTGAAGCCCCAGGAGCTTACATAAGTAAGTGACTGGGGTGAACGAATGCAGCCGCAGcac                                         <  1:1093437‑M1/63‑1 (MQ=255)
                                                                    gaTGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAACTCCAGGAGCTTACAATAGTAAGTGACTGGGGTGAACGCACGTAGCCGCAGCACATGCAACt                                 >  2:265650/2‑101 (MQ=255)
                                                                       tgATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAACTCCAGGAGCTTACAATAGTAAGTGACTGGGGTGAACGAACGTAGCCGCAGCACATGCAACTTGa                              <  2:1646933/100‑1 (MQ=255)
                                                                           ttCGTGTTGCAGGAAGGCGGCAAGCGAGTGAACTCCAGGAGCTTACAATAGTAAGTGACTGGGGTGAACGAACGTAGCCGCAGCACATGCAACTTGAAATa                          <  2:994476/101‑1 (MQ=255)
                                                                             cGTGTTGCAGGAAGGCGGCAAGCGAGTGAACTCCAGGAGCTTACAATAGTAAGTGACTGGGGTGAACGAACGTAGCCGCAGCACATGCAACTTGAAATacg                        <  1:656064/101‑1 (MQ=255)
                                                                             cGTGTTGCAGGAAGGCGGCAAGCGAGTGAACTCCAGGAGCTTACAATAGTAAGTGACTGGGGTGAACGAACGTAGCCGCAGCACATGCAACTTGAAATacg                        <  1:715220/101‑1 (MQ=255)
                                                                                     aGGAAGGCGGCAAGCGAGTGAACTCCAGGAGCTTACAATAGTAAGTGACTGGGGTGAACGAACGTAGCCGCAGCACATGCAACTTGAAATACGACGAGTaa                >  2:73426/1‑101 (MQ=255)
                                                                                        aaGGCGGCAAGCGAGTGAACTCCAGGAGCTTACAATAGTAAGTGACTGGGGTGAACGAACGTAGCCGCAGCACATGCAACTTGAAATACGACGAGTAAATc             >  2:558357/1‑101 (MQ=255)
                                                                                          ggcggcAAGCGAGTGAACTCCAGGAGCTTACAATAGTAAGTGACTGGGGTGAACGAACGTAGCCGCAGCACATGCAACTTGAAATACGACGAGTAAATCGt           >  1:521643/1‑101 (MQ=255)
                                                                                                   CGAGTGAACTCCAGGAGCTTACAATAGTAAGTGACTGGGGTGAACGAACGTAGCCGCAGCACATGCAACTTGAAATACGACGAGTAAATCGTTTGCGTGtt  <  1:1379231‑M1/101‑1 (MQ=255)
                                                                                                   |                                                                                                     
ATGTAGGTCGATACACTATTCTTTCAGGCTGCTGCAATAGCGCACTGAAAGGTGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAACTCCAGGAGCTTACAATAGTAAGTGACTGGGGTGAACGAACGTAGCCGCAGCACATGCAACTTGAAATACGACGAGTAAATCGTTTGCGTGTT  >  2/55560‑55759

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.