New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | 2 | 55659 = | 45 (0.680) | 30 (0.490) | 19/184 | 2.6 | 59.2% | intergenic (–/–) | –/– | –/– |
? | 70 | = 22841 | 0 (0.000) | intergenic (–/–) | –/– | –/– |
ATGTAGGTCGATACACTATTCTTTCAGGCTGCTGCAATAGCGCACTGAAAGGTGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAA‑CTCCAGGAGCTTACAATAGTAAGTGACTGGGGTGAACGAACGTAGCCGCAGCACATGCAACTTGAAATACGACGAGTAAATCGTTTGCGTGTT > 2/55560‑55759 | aaatcaaggcctggctggcataatccctactccactcctgctatgcttaacaaattattcatagactctaaataattcgagttgcaggaaggcggcaaaCg < 1:1130758‑M1/2‑1 (MQ=255) aaatcaaggcctggctggcataatccctactccactcctgctatgcttaacaaattattcatagactctaaataattcgagttgcaggaaggcggcaaaCg < 2:857035‑M1/2‑1 (MQ=255) aatcaaggcctggctggcataatccctactccactcctgctatgcttaacaaattattcatagactctaaataattcgagttgcaggaaggcggcaaaCGa < 1:1324324‑M1/3‑1 (MQ=255) gTAGGTCGATACACTATTCTTTCAGGCTGCTGCAATAGCGCACTGAAAGGTGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAg < 1:76968/101‑1 (MQ=255) tcaaggcctggctggcataatccctactccactcctgctatgcttaacaaattattcatagactctaaataattcgagttgcaggaaggcggcaaaCGAGt > 1:1710382‑M1/97‑101 (MQ=255) tCGATACACTATTCTTTCAGGCTGCTGCAATAGCGCACTGAAAGGTGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAA‑c < 1:464538/101‑1 (MQ=255) tCGATACACTATTCTTTCAGGCTGCTGCAATAGCGCACTGAAAGGTGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAA‑c < 1:1348276/101‑1 (MQ=255) ggcctggctggcataatccctactccactcctgctatgcttaacaaattattcatagactctaaataattcgagttgcaggaaggcggcaaaCGAGTgaag < 1:1688102‑M1/9‑2 (MQ=255) cGATACACTATTCTTTCAGGCTGCTGCAATAGCGCACTGAAAGGTGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAA‑Ct > 1:1066508/1‑101 (MQ=255) cGATACACTATTCTTTCAGGCTGCTGCAATAGCGCACTGAAAGGTGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAA‑Ct > 2:675300/1‑101 (MQ=255) tACACTATTCTTTCAGGCTGCTGCAATAGCGCACTGAAAGGTGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAA‑CTCCa < 2:1532523/101‑1 (MQ=255) acacTATTCTTTCAGGCTGCTGCAATAGCGCACTGAAAGGTGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAA‑CTCCAg > 2:1687111/1‑101 (MQ=255) acTATTCTTTCAGGCTGCTGCAATAGCGCACTGAAAGGTGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAA‑CTCCAGGa > 1:162681/1‑101 (MQ=255) cTATTCTTTCAGGCTGCTGCAATAGCGCACTGAAAGGTGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAA‑CTCCAGGAg > 2:385007/1‑101 (MQ=255) cTATTCTTTCAGGCTGCTGCAATAGCGCACTGAAAGGTGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAA‑CTCCAGGAg > 1:959753/1‑101 (MQ=255) aTTCTTTCAGGCTGCTGCAATAGCGCACTGAAAGGTGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAA‑CTCCAGGAGCt > 2:715215/1‑101 (MQ=255) aTTCTTTCAGGCTGCTGCAATAGCGCACTGAAAGGTGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAA‑CTCCAGGAGCt > 2:1513947/1‑101 (MQ=255) ttCTTTCAGGCTGCTGCAATAGCGCACTGAAAGGTGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAA‑CTCCAGGAGCtt < 1:561986/101‑1 (MQ=255) ttCTTTCAGGCTGCTGCAATAGCGCACTGAAAGGTGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAA‑CTCCAGGAGCtt > 2:561981/1‑101 (MQ=255) tCTTTCAGCCTGCTGCAATAGCGCACTGAAAGGTGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAA‑CTCCAGGAGCTTa < 2:1474541/101‑1 (MQ=255) ataatccctactccactcctgctatgcttaacaaattattcatagactctaaataattcgagttgcaggaaggcggcaaaCGAGTGAAGCCCCAGGAGCtt < 1:1037280‑M1/21‑1 (MQ=255) ataatccctactccactcctgctatgcttaacaaattattcatagactctaaataattcgagttgcaggaaggcggcaaaCGAGTGAAGCCCCAGGAGCtt < 2:658643‑M1/21‑1 (MQ=255) ataatccctactccactcctgctatgcttaacaaattattcatagaccctaaataattcgagttgcaggaaggcggcaaaCGAGTGAAGCCCCAGGAGCtt > 1:1448454‑M1/81‑101 (MQ=255) taatccctactccactcctgctatgcttaacaaattattcatagactctaaataattcgagttgcaggaaggcggcaaaCGAGTGAAGCCCCAGGAGCTTa > 1:329175‑M1/80‑101 (MQ=255) cTTTCAGGCTGCTGCAATAGCGCACTGAAAGGTGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAA‑CTCCAGGAGCTTAc < 1:1327607/101‑1 (MQ=255) tttCAGGCTGCTGCAATAGCGCACTGAAAGGTGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAA‑CTCCAGGAGCTTACa > 1:358849/1‑101 (MQ=255) aatccctactccactcctgctatgcttaacaaattattcatagactctaaataattcgagttgcaggaaggcggcaaaCGAGTGAAGCCCCAGGAGCTTAc > 2:119967‑M1/79‑101 (MQ=255) ttCAGGCTGCTGCAATAGCGCACTGAAAGGTGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAA‑CTCCAGGAGCTTACaa < 1:1616202/101‑1 (MQ=255) cAGGCTGCTGCAATAGCGCACTGAAAGGTGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAA‑CTCCAGGAGCTTACAATa > 1:1158204/1‑101 (MQ=255) cAGGCTGCTGCAATAGCGCACTGAAAGGTGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAA‑CTCCAGGAGCTTACAATa > 1:538762/1‑101 (MQ=255) ggCTGCTGCAATAGCGCACTGAAAGGTGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAA‑CTCCAGGAGCTTACAATAGt > 2:1424553/1‑101 (MQ=255) ctactccactcctgctatgcttaacaaattattcatagactctaaataattcgagttgcaggaaggcggcaaaCGAGTGAAGCCCCAGGAGCttacataag < 1:1023753‑M1/28‑5 (MQ=255) ctactccactcctgctatgcttaacaaattattcatagactctaaataattcgagttgcaggaaggcggcaaaCGAGTGAAGCCCCAGGAGCttacataag > 2:784571‑M1/74‑97 (MQ=255) ctactccactcctgctatgcttaacaaattattcatagactctaaataattcgagttgcaggaaggcggcaaaCGAGTGAAGCCCCAGGAGCttacataag < 1:1716825‑M1/28‑5 (MQ=255) ctactccactcctgctatgcttaacaaattattcatagactctaaataattcgagttgcaggaaggcggcaaaCGAGTGAAGCCCCAGGAGCttacataag < 2:459047‑M1/28‑5 (MQ=255) tactccactcctgctatgcttaacaaattattcatagactctaaataattcgagttgcaggaaggcggcaaaCGAGTGAAGCCCCAGGAGcttacataagt < 2:734467‑M1/29‑6 (MQ=255) ctgctgCAATAGCGCACTGAAAGGTGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAA‑CTCCAGGAGCTTACAATAGTaa < 1:1379460/101‑1 (MQ=255) tgctgcAATAGCGCACTGAAAGGTGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAA‑CTCCAGGAGCTTACAATAGTAAg < 1:141711/101‑1 (MQ=255) gctgcAATAGCGCACTGAAAGGTGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAA‑CTCCAGGAGCTTACAATAGTAAGt < 2:843521/101‑1 (MQ=255) tcctgctatgcttaacaaattattcatagactctaaataattcgagttgcaggaaggcggcaaaCGAGTGAAGCCCCAGGAGCTTACATAAGTAAGTGACt > 1:983696‑M1/65‑101 (MQ=255) tcctgctatgcttaacaaattattcatagactctaaataattcgagttgcaggaaggcggcaaaCGAGTGAAGCCCCAGGAGCTTACATAAGTAAGTGACt > 2:1172054‑M1/65‑101 (MQ=255) tcctgctatgcttaacaaattattcatagactctaaataattcgagttgcaggaaggcggcaaaCGAGTGAAGCCCCAGGAGCTTACATAAGTAAGTGACt > 2:1716819‑M1/65‑101 (MQ=255) tAGCGCACTGAAAGGTGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAA‑CTCCAGGAGCTTACAATAGTAAGTGACTggg > 2:1665882/1‑101 (MQ=255) tgctatgcttaacaaattattcgtagactctaaataattcgagttgcaggaaggcggcaaaCGAGTGAAGCCCCAGGAGCTTACATAAGTAAGTGACTggg < 2:1119655‑M1/40‑1 (MQ=255) tgctatgcttaacaaattattcatagactctaaataattcgagttgcaggaaggcggcaaaCGAGTGAAGCCCCAGGAGCTTACATAAGTAAGTGACTggg < 1:1440051‑M1/40‑1 (MQ=255) tgctatgcttaacaaattattcatagactctaaataattcgagttgcaggaaggcggcaaaCGAGTGAAGCCCCAGGAGCTTACATAAGTAAGTGACTggg > 2:110411‑M1/62‑101 (MQ=255) aGCGCACTGAAAGGTGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAA‑CTCCAGGAGCTTACAATAGTAAGTGACTgggg < 2:162681/101‑1 (MQ=255) gctatgcttaacaaattattcatagactctaaataattcgagttgcaggaaggcggcaaaCGAGTGAAGCCCCAGGAGCTTACATAAGTAAGTGACTgggg > 1:1217197‑M1/61‑101 (MQ=255) ctatgcttaacaaattattcatagactctaaataattcgagttgcaggaaggcggcaaaCGAGTGAAGCCCCAGGAGCTTACATAAGTAAGTGACTGGGGt < 1:700493‑M1/42‑1 (MQ=255) ctatgcttaacaaattattcatagactctaaataattcgagttgcaggaaggcggcaaaCGAGTGAAGCCCCAGGAGCTTACATAAGTAAGTGACTGGGGt < 2:1134031‑M1/42‑1 (MQ=255) cACTGAAAGGTGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAA‑CTCCAGGAGCTTACAATAGTAAGTGACTGGGGTgaa < 1:514052/101‑1 (MQ=255) cACTGAAAGGTGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAA‑CTCCAGGAGCTTACAATAGTAAGTGACTGGGGTgaa > 1:75379/1‑101 (MQ=255) atgcttaacaaattattcatagactctaaataattcgagttgcaggaaggcggcaaaCGAGTGAAGCCCCAGGAGCTTACATAAGTAAGTGactgggggga < 2:187365‑M1/44‑4 (MQ=255) atgcttaacaaattattcatagactctaaataattcgagttgcaggaaggcggcaaaCGAGTGAAGCCCCAGGAGCTTACATAAGTAAGTGACTGGGGTga < 2:1631632‑M1/44‑1 (MQ=255) gcttaacaaattattcatagactctaaataattcgagttgcaggaaggcggcaaaCGAGTGAAGCCCCAGGAGCTTACATAAGTAAGTGACTGGGGTgaac > 1:658648‑M1/56‑101 (MQ=255) cttaacaaattattcatagactctaaataattcgagttgcaggaaggcggcaaaCGAGTGAAGCCCCAGGAGCTTACATAAGTAAGTGACTGGGGTgaacg < 1:507742‑M1/47‑1 (MQ=255) cttaacaaattattcatagactctaaataattcgagttgcaggaaggcggcaaaCGAGTGAAGCCCCAGGAGCTTACATAAGTAAGTGACTGGGGTgaacg < 2:703023‑M1/47‑1 (MQ=255) taacaaattattcatagactctaaataattcgagttgcaggaaggcggcaaaCGAGTGAAGCCCCAGGAGCTTACATAAGTAAGTGACTGGGGTgaacgaa < 2:354525‑M1/49‑1 (MQ=255) aaaGGTGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAA‑CTCCAGGAGCTTACAATAGTAAGTGACTGGGGTgaacgaac < 2:75379/101‑1 (MQ=255) aaaGGTGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAA‑CTCCAGGAGCTTACAATAGTAAGTGACTGGGGTgaacgaac < 1:691077/101‑1 (MQ=255) acaaattattcatagactctaaataattcgagttgcaggaaggcggcaaaCGAGTGAAGCCCCAGGAGCTTACATAAGTAAGTGACTGGGgtgaacgaatg < 1:1315309‑M1/51‑3 (MQ=255) tGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAA‑CTCCAGGAGCTTACAATAGTAAGTGACTGGGGTGAACGAACGTAGc > 2:1703665/1‑101 (MQ=255) tGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAA‑CTCCAGGAGCTTACAATAGTAAGTGACTGGGGTGAACGAACGTAGc > 1:1076295/1‑101 (MQ=255) tGATGTTTGTTTACTCAATGGATTTCGTGTTGCAGGAAGGCGGAAAGCGAGTGAA‑CTCCAGGAGCTTACTATAGTAAGTGACTGGGGTGAACGAACGTAGc > 2:1393422/1‑101 (MQ=25) aattattcatagactctaaataattcgagttgcaggaaggcggcaaaCGAGTGAAGCCCCAGGAGCTTACATAAGTAAGTGACTggggtgaacgaatgcag < 1:623369‑M1/54‑6 (MQ=255) gATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAA‑CTCCAGGAGCTTACAATAGTAAGTGACTGGGGTGAACGAACGTAGcc < 2:1197185/101‑1 (MQ=255) attattcatagactctaaataattcgagttgcaggaaggcggcaaaCGAGTGAAGCCCCAGGAGCTTACATAAGTAAGTGACtggggtgaacgaatgcagc > 1:459052‑M1/47‑95 (MQ=255) aTGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAA‑CTCCAGGAGATTACAATAGTAAGTGACTGGGGTGAACGAACGTAGCCg > 2:860566/1‑101 (MQ=255) tttgtttACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAA‑CTCCAGGAGCTTACAATAGTAAGTGACTGGGGTGAACGAACGTAGCCgcag > 1:148790/1‑101 (MQ=255) catagactctaaataattcgagttgcaggaaggcggcaaaCGAGTGAAGCCCCAGGAGCTTACATAAGTAAGTGACTGGGGTGAACGAATGCAGCCgcagc > 1:1133346‑M1/41‑101 (MQ=255) tttACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAA‑CTCCAGGAGCTTACAATAGTAAGTGACTGGGGTGAACGAACGTAGCCGCAGcaca > 2:283380/1‑101 (MQ=255) tagactctaaataattcgagttgcaggaaggcggcaaaCGAGTGAAGCCCCAGGAGCTTACATAAGTAAGTGACTGGGGTGAACGAATGCAGCCGCAGcac < 1:1093437‑M1/63‑1 (MQ=255) gaTGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAA‑CTCCAGGAGCTTACAATAGTAAGTGACTGGGGTGAACGCACGTAGCCGCAGCACATGCAACt > 2:265650/2‑101 (MQ=255) tgATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAA‑CTCCAGGAGCTTACAATAGTAAGTGACTGGGGTGAACGAACGTAGCCGCAGCACATGCAACTTGa < 2:1646933/100‑1 (MQ=255) ttCGTGTTGCAGGAAGGCGGCAAGCGAGTGAA‑CTCCAGGAGCTTACAATAGTAAGTGACTGGGGTGAACGAACGTAGCCGCAGCACATGCAACTTGAAATa < 2:994476/101‑1 (MQ=255) cGTGTTGCAGGAAGGCGGCAAGCGAGTGAA‑CTCCAGGAGCTTACAATAGTAAGTGACTGGGGTGAACGAACGTAGCCGCAGCACATGCAACTTGAAATacg < 1:656064/101‑1 (MQ=255) cGTGTTGCAGGAAGGCGGCAAGCGAGTGAA‑CTCCAGGAGCTTACAATAGTAAGTGACTGGGGTGAACGAACGTAGCCGCAGCACATGCAACTTGAAATacg < 1:715220/101‑1 (MQ=255) aGGAAGGCGGCAAGCGAGTGAA‑CTCCAGGAGCTTACAATAGTAAGTGACTGGGGTGAACGAACGTAGCCGCAGCACATGCAACTTGAAATACGACGAGTaa > 2:73426/1‑101 (MQ=255) aaGGCGGCAAGCGAGTGAA‑CTCCAGGAGCTTACAATAGTAAGTGACTGGGGTGAACGAACGTAGCCGCAGCACATGCAACTTGAAATACGACGAGTAAATc > 2:558357/1‑101 (MQ=255) ggcggcAAGCGAGTGAA‑CTCCAGGAGCTTACAATAGTAAGTGACTGGGGTGAACGAACGTAGCCGCAGCACATGCAACTTGAAATACGACGAGTAAATCGt > 1:521643/1‑101 (MQ=255) CGAGTGAA‑CTCCAGGAGCTTACAATAGTAAGTGACTGGGGTGAACGAACGTAGCCGCAGCACATGCAACTTGAAATACGACGAGTAAATCGTTTGCGTGtt < 1:1379231‑M1/101‑1 (MQ=255) | ATGTAGGTCGATACACTATTCTTTCAGGCTGCTGCAATAGCGCACTGAAAGGTGATGTTTGTTTACTCTATGGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAA‑CTCCAGGAGCTTACAATAGTAAGTGACTGGGGTGAACGAACGTAGCCGCAGCACATGCAACTTGAAATACGACGAGTAAATCGTTTGCGTGTT > 2/55560‑55759 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |