New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? 191 = 58640 (0.000)55 (0.990) 43/166 -0.0 100% intergenic (–/–) –/– –/–
?193 = 2264 0 (0.000)intergenic (–/–) –/– –/–

GTTAAGATTTTACTTTAAACACTGTTCGGTTATGTATTGCTGAGCACCTTCAAGTTGGGCCTGCATCATTACCAGTCGTTCCCGGAGGGTGAAATAATCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  191/5764‑5864
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gTTAAGATTTTACTTTAAACACTGTTCGGTTATGTATTGCTGAGCACCTTCAAGTTGGGCCTGCATCATTACCAGTCGTTCCCGGAGGGTTAAATAATCCC                                                                                                      >  2:727593‑M1/1‑101 (MQ=255)
 ttAAGATTTTACTTTAAACACTGTTCGGTTATGTATTGCTGAGCACCTTCAAGTTGGGCCTGCATCATTACCAGTCGTTCCCGGAGGGTGAAATAATCCCg                                                                                                     >  2:445413‑M1/1‑100 (MQ=255)
 ttAAGATTTTACTTTAAACACTGTTCGGTTATGTATTGCTGAGCACCTTCAAGTTGGGCCTGCATCATTACCAGTCGTTCCCGGAGGGTGAAATAATCCCg                                                                                                     >  2:657792‑M1/1‑100 (MQ=255)
 ttAAGATTTTACTTTAAACACTGTTCGGTTATGTATTGCTGAGCACCTTCAAGTTGGGCCTGCATCATTACCAGTCGTTCCCGGAGGGTGAAATAATCCCg                                                                                                     <  1:357303‑M1/101‑2 (MQ=255)
 ttAAGATTTTACTTTAAACACTGTTCGGTTATGTATTGCTGAGCACCTTCAAGTTGGGCCTGCATCATTACCAGTCGTTCCCGGAGGGTGAAATAATCCCg                                                                                                     <  1:233973‑M1/101‑2 (MQ=255)
  tAAGATTTTACTTTAAACACTGTTCGGTTATGTATTGCTGAGCACCTTCAAGTTGGGCCTGCATCATTACCAGTCGTTCCCGGAGGGTGAAATAATCCCgt                                                                                                    >  2:1058489‑M1/1‑99 (MQ=255)
    aGATTTTACTTTAAACACTGTTCGGTTATGTATTGCTGAGCACCTTCAAGTTGGGCCTGCATCATTACCAGTCGTTCCCGGAGGGTGAAATAATCCCgttc                                                                                                  <  1:866040‑M1/101‑5 (MQ=255)
      aTTTTACTTTAAACACTGTTCGGTTATGTATTGCTGAGCACCTTCAAGTTGGGCCTGCATCATTACCAGTCGTTCCCGGAGGGTGAAATAATCCCgttcag                                                                                                >  1:799422‑M1/1‑95 (MQ=255)
      aTTTTACTTTAAACACTGTTCGGTTATGTATTGCTGAGCACCTTCAAGTTGGGCCTGCATCATTACCAGTCGTTCCCGGAGGGTGAAATAATCCCgttcag                                                                                                <  2:129450‑M1/101‑7 (MQ=255)
       ttttataataaccacagTTCGGTTATGTAGTGCTGAGCACCTTCAAGTTGGGCCGGCATCATTACCAGTCGTTCCCGGAGGGTGAAATAATCCCgttcagc                                                                                               <  2:1281823‑M1/93‑8 (MQ=255)
         ttACTTTAAACACTGTTCGGTTATGTATTGCTGAGCACCTTCAAGTTGGGCCTGCATCATTACCAGTCGTTCCCGGAGGGTGAAATAATCCCgttcagcgg                                                                                             >  1:1222714‑M1/1‑92 (MQ=255)
          tACTTTAAACACTGTTCGGTTATGTATTGCTGAGCACCTTCAAGTTGGGCCTGCATCATTACCAGTCGTTCCCGGAGGGTGAAATAATCCCgttcagcggt                                                                                            >  1:686825‑M1/1‑91 (MQ=255)
          tACTTTAAACACTGTTCGGTTATGTATTGCTGAGCACCTTCAAGTTGGGCCTGCATCATTACCAGTCGTTCCCGGAGGGTGAAATAATCCCgttcagcggt                                                                                            >  2:652387‑M1/1‑91 (MQ=255)
           aCTTTAAACACTGTTCGGTTATGTATTGCTGAGCACCTTCAAGTTGGGCCTGCATCATTACCAGTCGTTCCCGGAGGGTGAAATAATCCCgttcagcggtg                                                                                           <  2:1531127‑M1/101‑12 (MQ=255)
             tttAAACACTGTTCGGTTATGTATTGCTGAGCACCTTCAAGTTGGGCCTGCATCATTACCAGTCGTTCCCGGAGGGCGAAATAATCCCgttcagcggtgtc                                                                                         >  2:621284‑M1/1‑88 (MQ=255)
              ttAAACACTGTTCGGTTATGTATTGCTGAGCACCTTCAAGTTGGGCCTGCATCATTACCAGTCGTTCCCGGAGGGTGAAATAATCCCgttcagcggtgtct                                                                                        <  2:492021‑M1/101‑15 (MQ=255)
              ttAAACACTGTTCGGTTATGTATTGCTGAGCACCTTCAAGTTGGGCCTGCATCATTACCAGTCGTTCCCGGAGGGTGAAATAATCCCgttcagcggtgtct                                                                                        >  2:1651247‑M1/1‑87 (MQ=255)
               tAAACACTGTTCGGTTATGTATTGCTGAGCACCTTCAAGTTGGGCCTGCATCATTACCAGTCGTTCCCGGAGGGTGAAATAATCCCgttcagcggtgtctg                                                                                       <  2:956646‑M1/101‑16 (MQ=255)
                   cacTGTTCGGTTATGTATTGCTGAGCACCTTCAAGTTGGGCCTGCATCATTACCAGTCGTTCCCGGAGGGTGAAATAATCCCgttcagcggtgtctgccag                                                                                   <  2:502464‑M1/101‑20 (MQ=255)
                     cTGTTCGGTTATGTATTGCTGAGCACCTTCAAGTTGGGCCTGCATCATTACCAGTCGTTCCCGGAGGGTGAAATAATCCCgttcagcggtgtctgccagtc                                                                                 >  2:49039‑M1/1‑80 (MQ=255)
                     cTGTTCGGTTATGTATTGCTGAGCACCTTCAAGTTGGGCCTGCATCATTACCAGTCGTTCCCGGAGGGTGAAATAATCCCgttcagcggtgtctgccagtc                                                                                 <  2:305009‑M1/101‑22 (MQ=255)
                         tCGGTTATGTATTGCTGAGCACCTTCAAGTTGGGCCTGCATCATTACCAGTCGTTCCCGGAGGGTGAAATAATCCCgttcagcggtgtctgccagtcgggg                                                                             <  1:148021‑M1/101‑26 (MQ=255)
                           ggTTATGTATTGCTGAGCACCTTCAAGTTGGGCCTGCATCATTACCAGTCGTTCCCGGAGGGTGAAATAATCCCgttcagcggtgtctgccagtcgggggg                                                                           >  1:32414‑M1/1‑74 (MQ=255)
                           ggTTATGTATTGCTGAGCACCTCCAAGTTGGGCCTGCATCATTACCAGTCGTTCCCGGAGGGTGAAATAATCCCgttcagcggtgtctgccagtcgggggg                                                                           >  1:154963‑M1/1‑74 (MQ=255)
                            gTTATGTATTGCTGAGCACCTTCAAGTTGGGCCTGCATCATTACCAGTCGTTCCCGGAGGGTGAAATAATCCCgttcagcggtgtctgccagtcgggggga                                                                          >  1:45601‑M1/1‑73 (MQ=255)
                              gtgatgttgctgagCACCTTCAAGTTGGGCCTGCATCATTACCAGTCGTTCCCGGAGGGTGAAATAATCCCgttcagcggtgtctgccagtcggggggagg                                                                        >  2:1378278‑M1/7‑71 (MQ=255)
                                   aTTGCTGAGCACCTTCAAGTTGGGCCTGCATCATTACCAGTCGTTCCCGGAGGGTGAAATAATCCCgttcagcggtgtctgccagtcggggggaggctgca                                                                   >  2:1177630‑M1/1‑66 (MQ=255)
                                   aTTGCTGAGCACCTTCAAGTTGGGCCTGCATCATTACCAGTCGTTCCCGGAGGGTGAAATAATCCCgttcagcggtgtctgccagtcggggggaggctgca                                                                   >  1:994948‑M1/1‑66 (MQ=255)
                                   aTTGCTGAGCACCTTCAAGTTGGGCCTGCATCATTACCAGTCGTTCCCGGAGGGTGAAATAATCCCgttcagcggtgtctgccagtcggggggaggctgca                                                                   <  2:57965‑M1/101‑36 (MQ=255)
                                    ttGCTGAGCACCTTCAAGTTGGGCCTGCATCATTACCAGTCGTTCCCGGAGGGTGAAATAATCCCgttcagcggtgtctgccagtcggggggaggctgcat                                                                  <  1:953284‑M1/101‑37 (MQ=255)
                                    ttGCTGAGCACCTTCAAGTTGGGCCTGCATCATTACCAGTCGTTCCCGGAGGGTGAAATAATCCCgatcagcggtgtctgccagtcgggaggaggctgcat                                                                  >  1:1066944‑M1/1‑65 (MQ=255)
                                       cTGAGCACCTTCAAGTTGGGCCTGCATCATTACCAGTCGTTCCCGGAGGATGAAATAATCCCgttcagcggtgtctgccagtcggggggaggctgcattat                                                               <  2:1070922‑M1/101‑40 (MQ=255)
                                          aGCACCTTCAAGTTGGGCCTGCATCATTACCAGTCGTTCCCGGAGGGTGAAATAATCCCgttcagcggtgtctgccagtcggggggaggctgcattatcca                                                            >  2:461396‑M1/1‑59 (MQ=255)
                                                   aaGTTGGGCCTGCATCATTACCAGTCGTTCCCGGAGGGTGAAATAATCCCgttcagcggtgtctgccagtcggggggaggctgcattatccacgccggagg                                                   >  2:1536452‑M1/1‑50 (MQ=255)
                                                      gtgGGCCTGCATGATTACCAGTCGCTCCCGGAGGGTGAAATAATCCCgttcagcggtgtctgccagtcggggggaggctgcattatccacgccggaggcgg                                                <  2:1471651‑M1/100‑55 (MQ=255)
                                                          gCCTGCATCATTACCAGTCGTTCCCGGAGGGTGAAATAATCCCgttcagcggtgtctgccagtcggggggaggctgcattatccacgccggaggcggtggt                                            <  1:1177635‑M1/101‑59 (MQ=255)
                                                           ccTGCATCATTACCAGTCGTTCCCGGAGGGTGAAATAATCCCgttcagcggtgtctgccagtcggggggaggctgcattatccacgccggaggcggtggtg                                           <  2:211917‑M1/101‑60 (MQ=255)
                                                           ccTGCATCATTACCAGTCGTTCCCGGAGGGTGAAATAATCCCgttcagcggtgtctgccagtcggggggaggctgcattatccacgccggaggcggtggtg                                           <  1:1159189‑M1/101‑60 (MQ=255)
                                                            cTGCATCATTACCAGTCGTTCCCGGAGGGTGAAATAATCCCgttcagcggtgtctgccagtcggggggaggctgcattatccacgccggaggcggtggtgg                                          >  1:618144‑M1/1‑41 (MQ=255)
                                                            cTGCATCATTACCAGTCGTTCCCGGAGGGTGAAATAATCCCgttcagcggtgtctgccagtcggggggaggctgcattatccacgccggaggcggtggtgg                                          <  1:610354‑M1/101‑61 (MQ=255)
                                                            cTGCATCATTACCAGTCGTTCCCGGAGGGTGAAATAATCCCgttcagcggtgtctgccagtcggggggaggctgcattatccacgccggaggcggtggtgg                                          >  1:593505‑M1/1‑41 (MQ=255)
                                                            cTGCATCATTACCAGTCGTTCCCGGAGGGTGAAATAATCCCgttcagcggtgtctgccagtcggggggaggctgcattatccacgccggaggcggtggtgg                                          >  2:1104366‑M1/1‑41 (MQ=255)
                                                            cTGCATCATTACCAGTCGTTCCCGGAGGGTGAAATAATCCCgttcagcggggtctgccagtcggggggaggctgcattatccacgccggaggcgggggtgg                                          >  2:1550016‑M1/1‑41 (MQ=255)
                                                             tGCATCATTACCAGTCGTTCCCGGAGGGTGAAATAATCCCgttcagcggtgtctgccagtcggggggaggctgcattatccacgccggaggcggtggtggc                                         >  2:1415077‑M1/1‑40 (MQ=255)
                                                              gCATCATTACCAGTCGTTCCCGGAGGGTGAAATAATCCCgttcagcggtgtctgccagtcggggggaggctgcattatccacgccggaggcggtggtggct                                        >  1:406982‑M1/1‑39 (MQ=255)
                                                               catcatTACCAGTCGTTCCCGGAGGGTGAAATAATCCCgttcagcggtgtctgccagtcggggggaggctgcattatccacgccggaggcggtggtggctt                                       >  1:1162688‑M1/1‑38 (MQ=255)
                                                                 tcatTACCAGTCGTTCCCGGAGGGTGAAATAATCCCgttcagcggtgtctgccagtcggggggaggctgcattatccacgccggaggcggtggtggcttca                                     <  1:610197‑M1/101‑66 (MQ=255)
                                                                   atTACCAGTCGTTCCCGGAGGGTGAAATAATCCCgttcagcggtgtctgccagtcggggggaggctgcattatccacgccggaggcggtggtggcttcacg                                   >  2:307393‑M1/1‑34 (MQ=255)
                                                                     tACCAGTCGTTCCCGGAGGGTGAAATAATCCCgttcagcggtgtctgccagtcggggggaggctgcattatccacgccggaggcggtggtggcttcacgca                                 <  1:1540956‑M1/101‑70 (MQ=255)
                                                                        cAGTCGTTCCCGGAGGGTGAAATAATCCCgttcagcggtgtctgccagtcggggggaggctgcattatccacgccggaggcggtggtggcttcacgcactg                              <  1:430661‑M1/101‑73 (MQ=255)
                                                                        cAGTCGTTCCCGGAGGGTGAAATAATCCCgttcagcggtgtctgccagtcggggggaggctgcattatccacgccggaggcggtggtggcttcacgcactg                              <  2:799417‑M1/101‑73 (MQ=255)
                                                                         aGTCGTTCCCGGAGGGTGAAATAATCCCgttcagcggtgtctgccagtcggggggaggctgcattatccacgccggaggcggtggtggcttcacgcactga                             >  1:680954‑M1/1‑28 (MQ=255)
                                                                           tCGTTCCCGGAGGGTGAAATAATCCCgttcagcggtgtctgccagtcggggggaggctgcattatccacgccggaggcggtggtggcttcacgcactgact                           <  2:1285233‑M1/101‑76 (MQ=255)
                                                                             gTTCCCGGAGGGTGAAATAATCCCgttcagcggtgtctgccagtcggggggaggctgcattatccacgccggaggcggtggtggcttcacgcactgactga                         >  2:506445‑M1/1‑24 (MQ=255)
                                                                              ttCCCGGAGGGTGAAATAATCCCgttcagcggtgtctgccagtcggggggaggctgcattatccacgccggaggcggtggtggcttcacgcactgactgac                        <  2:100343‑M1/101‑79 (MQ=255)
                                                                                   ggAGGGTGAAATAATCCCgttcagcggtgtctgccagtcggggggaggctgcattatccacgccggaggcggtggtggcttcacgcactgactgacagact                   <  2:686820‑M1/101‑84 (MQ=255)
                                                                                    gAGGGTGAAATAATCCCgttcagcggtgtctgccagtcggggggaggctgcattatccacgccggaggcggtggtggcttcacgcactgactgacagactg                  >  2:613863‑M1/1‑17 (MQ=255)
                                                                                      gggTGAAATAATCCCgttcagcggtgtctgccagtcggggggaggctgcattatccacgccggaggcggtggtggcttcacgcactgactgacagactgct                <  2:1403504‑M1/101‑87 (MQ=255)
                                                                                          gAAATAATCCCgttcagcggtgtctgccagtcggggggaggctgcattatccacgccggaggcggtggtggcttcacgcactgactgacagactgctttga            <  1:1460574‑M1/101‑91 (MQ=255)
                                                                                           aaaTAATCCCgttcagcggtgtctgccagtcggggggaggctgcattatccacgccggaggcggtggtggcttcacgcactgactgacagactgctttgat           >  2:1217048‑M1/1‑10 (MQ=255)
                                                                                              taatCCCgttcagcggtgtctgccagtcggggggaggctgcattatccacgccggaggcggtggtggcttcacgcactgactgacagactgctttgatgtg        >  2:882167‑M1/1‑7 (MQ=255)
                                                                                              taatCCCgttcagcggtgtctgccagtcggggggaggctgcattatccacgccggaggcggtggtggcttcacgcactgactgacagactgctttgatgtg        >  1:1345769‑M1/1‑7 (MQ=255)
                                                                                               aatCCCgttcagcggtgtctgccagtcggggggaggctgcattatccacgccggaggcggtggtggcttcacgcactgactgacagactgctttgatgtgc       <  1:1664806‑M1/101‑96 (MQ=255)
                                                                                                 tCCCgttcagcggtgtctgccagtcggggggaggctgcattatacacgccggaggcggtggtggcttcacgcactgactgacagactgctttgatgtgcaa     >  2:1707532‑M1/1‑4 (MQ=255)
                                                                                                    cgttcagcggtgtctgccagtcggggggaggctgcattatccacgccggaggcggtggtggcttcacgcactgactgacagactgctttgatgtgcaaccg  >  1:1027046‑M1/1‑1 (MQ=255)
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GTTAAGATTTTACTTTAAACACTGTTCGGTTATGTATTGCTGAGCACCTTCAAGTTGGGCCTGCATCATTACCAGTCGTTCCCGGAGGGTGAAATAATCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  191/5764‑5864

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.