New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? 186 = 66140 (0.000)40 (0.650) 27/186 2.5 72.7% intergenic (–/–) –/– –/–
?211 2681 = 30 (0.480)intergenic (–/–) –/– –/–

TAATCTCATCAGCTACAGAATGGATAAGATCACTTTCGGGGTATAAATTTATATCAACCAAACCTTGCGGATCTACATTTATGACCGGATTCAACGGATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  186/6514‑6614
                                                                                                    |                                                 
tAATCTCATCAGCTACAGAATGGATAAGATCACTTTCGGGGTATAAATTTATATCAACCAAACCTTGCGGATCTACATTTATGACCGGATTCAACGGATAC                                                   <  2:1276658‑M1/101‑1 (MQ=255)
tAATCTCATCAGCTACAGAATGGATAAGATCACTTTCGGGGTATAAATTTATATCAACCAAACCTTGCGGATCTACATTTATGACCGGATTCAACGGATAC                                                   <  1:250616‑M1/101‑1 (MQ=255)
tAATCTCATCAGCTACAGAATGGATAAGATCACTTTCGGGGTATAAATTTATATCAACCAAACCTTGCGGATCTACATTTATGACCGGATTCAACGGATAC                                                   <  1:1391853‑M1/101‑1 (MQ=255)
   tctcATCAGCTACAGAATGGATAAGATCACTTTCGGGGTATAAATTTATATCAACCAAACCTTGCGGATCTACATTTATGACCGGATTCAACGGATACtga                                                >  1:1180229‑M1/1‑98 (MQ=255)
   tctcATCAGCTACAGAATGGATAAGATCACTTTCGGGGTATAAATTTATATCAACCAAACCTTGCGGATCTACATTTATGACCGGATTCAACGGATACtga                                                >  1:360727‑M1/1‑98 (MQ=255)
   tctcATCAGCTACAGAATGGATAAGATCACTTTCGGGGTATAAATTTATATCAACCAAACCTTGCGGATCTACATTTATGACCGGATTCAACGGATACtga                                                <  2:1098007‑M1/101‑4 (MQ=255)
   nctcaTCAGCTACAGAATGGATAAGATCACTTTCGGGGTATAAATTTATATCAACCAAACCTTGCGGATCTACATTTATGACCGGATTCAACGGATACtga                                                >  1:535656‑M1/2‑98 (MQ=255)
    ctcATCAGCTACAGAATGGATAAGATCACTTTCGGGGTATAAATTTATATCAACCAAACCTTGCGGATCTACATTTATGACCGGATTCAACGGATACtgat                                               >  1:293256‑M1/1‑97 (MQ=255)
    ctcATCAGCTACAGAATGGATAAGATCACTTTCGGGGTATAAATTTATATCAACCAAACCTTGCGGATCTACATTTATGACCGGATTCAACGGATACtgat                                               <  2:481873‑M1/101‑5 (MQ=255)
    ctcATCAGCTACAGAATGGATAAGATCACTTTCGGGGAATAAATTTATATCAACCAAACCTTGCGGATCTACATTTATGACCGGATTCAACGGATACtgat                                               >  1:1495217‑M1/1‑97 (MQ=255)
      catcaGCTACAGAATGGATAAGATCACTTTCGGGGTATAAATTTATATCAACCAAACCTTGCGGATCTACATTTATGACCGGATTCAACGGATACtgataa                                             >  2:1329945‑M1/1‑95 (MQ=255)
       atcaGCTACAGAATGGATAAGATCACTTTCGGGGTATAAATTTATATCAACCAAACCATGCGGATCTACATTTATGACCGGATTCAACGGATACtgataaa                                            >  1:714729‑M1/1‑94 (MQ=255)
         caGCTACAGAATGGATAAGATCACTTTCGGGGTATAAATTTATATCAACCAAACCTTGCGGATCTACATTTATGACCGGATTCAACGGATACtgataaaaa                                          >  2:1607850‑M1/1‑92 (MQ=255)
           gCTACAGAATTGATAAGATCACTTTCGGGGTATAAATTTATATCAACCAAACCTTGCGGATCTACATTTATGACCGGATTCAACGGATACtgataaaaatt                                        <  1:931257‑M1/101‑12 (MQ=255)
             tACAGAATGGATAAGATCACTTTCGGGGTATAAATTTATATCAACCAAACCTTGCGGATCTACATTTATGACCGGATTCAACGGATACtgataaaaattcc                                      <  1:150048‑M1/101‑14 (MQ=255)
              aCAGAATGGATAAGATCACTTTCGGGGTATAAATTTATATCAACCAAACCTTGCGGATCTACATTTATGACCGGATTCAACGGATACtgataaaaattcca                                     >  1:970529‑M1/1‑87 (MQ=255)
               cAGAATGGATAAGATCACTTTCGGGGTATAAATTTATATCAACCAAACCTTGCGGATCTACATTTATGACCGGATTCAACGGATACtgataaaaattccat                                    <  2:774272‑M1/101‑16 (MQ=255)
               cAGAATGGATAAGATCACTTTCGGGGTATAAATTTATATCAACCAAACCTTGCGGATCTACATTTATGACCGGATTCAACGGATACtgataaaaattccat                                    <  2:525764‑M1/101‑16 (MQ=255)
                 gAATGGATAAGATCACTTTCGGGGTATAAATTTATATCAACCAAACCTTGCGGATCTACATTTATGACCGGATTCAACGGATACtgataaaaattccatcc                                  <  2:1677298‑M1/101‑18 (MQ=255)
                 gAATGGATAAGATCACTTTCGGGGTATAAATTTATATCAACCAAACCTTGCGGATCTACATTTATGACCGGATTCAACGGATACtgataaaaattccatcc                                  <  2:402900‑M1/101‑18 (MQ=255)
                 gAATGGATAAGATCACTTTCGGGGTATAAATTTATATCAACCAAACCTTGCGGATCTACATTTATGACCGGATTCAACGGATACtgataaaaattccatcc                                  >  1:92755‑M1/1‑84 (MQ=255)
                  aaTGGATAAGATCACTTTCGGGGGATAAATTTATATCAACCAAACCTTGCGGATCTACATTTATGACCGGATTCAACGGATACtgataaaaattccatccc                                 >  2:337186‑M1/1‑83 (MQ=255)
                   aTGGATAAGATCACTTTCGGGGTATAAATTTATATCAACCAAACCTTGCGGATCTACATTTATGACCGGATTCAACGGATACtgataaaaattccatcccc                                <  1:1329951‑M1/101‑20 (MQ=255)
                    tGGATAAGATCACTTTCGGGGTATAAATTTATATCAACCAAACCGTGCGGATCTACATTTATGACCGGATTCAACGGATACtgataaaaattccatccccc                               <  2:1434977‑M1/101‑21 (MQ=255)
                     ggATAAGATCACTTTCGGGGTATAAATTTATATCAACCAAACCTTGCGGATCTACATTTATGACCGGATTCAACGGATACtgataaaaattccatcccccc                              <  1:306544‑M1/101‑22 (MQ=255)
                      gATAAGATCACTTTCGGGGTATAAATTTATATCAACCAAACCTTGCGGATCTACATTTATGACCGGATTCAACGGATACtgataaaaattccatcccccct                             >  1:1558852‑M1/1‑79 (MQ=255)
                        tAAGATCACTTTCGGGGTATAAATTTATATCAACCAAACCTTGCGGATCTACATTTATGACCGGATTCAACGGATACtgataaaaattccatccccccttc                           >  2:748830‑M1/1‑77 (MQ=255)
                        tAAGATCACTTTCGGGGTATAAATTTATATCAACCAAACCTTGCGGATCTACATTTATGACCGGATTCAACGGATACtgataaaaattccatccccccttc                           >  1:1661983‑M1/1‑77 (MQ=255)
                           gATCACTTTCGGGGTATAAATTTATATCAACCAAACCTTGCGGATCTACATTTATGACCGGATTCAACGGATACtgataaaaattccatccccccttcagc                        <  1:1223214‑M1/101‑28 (MQ=255)
                              cACTTTCGGGGTATAAATTTATATCAACCAAACCTTGCGGATCTACATTTATGACCGGATTCAACGGATACtgataaaaattccatccccccttcagccca                     <  1:670661‑M1/101‑31 (MQ=255)
                               aCTTTCGGGGTATAAATTTATATCAACCAAACCTTGCGGATCTACATTTATGACCGGATTCAACGGATACtgataaaaattccatccccccttcagcccaa                    >  2:491235‑M1/1‑70 (MQ=255)
                                 tttCGGGGTATAAATTTATATCAACCAAACCTTGCGGATCTACATTTATGACCGGATTCAACGGATACtgataaaaattccatccccccttcagcccaatc                  <  2:116695‑M1/101‑34 (MQ=255)
                                     ggggTATAAATTTATATCAACCAAACCTTGCGGATCTACATTTATGACCGGATTCAACGGATACtgataaaaattccatccccccttcagcccaatcggat              <  2:1346733‑M1/101‑38 (MQ=255)
                                     ggggTATAAATTTATATCAACCAAACCTTGCGGATCTACATTTATGACCGGATTCAACGGATACtgataaaaattccatccccccttcagcccaatcggat              <  1:1557212‑M1/101‑38 (MQ=255)
                                      gggTATAAATTTATATCAACCAAACCTTGCGGATCTACATTTATGACCGGATTCAACGGATACtgataaaaattccatccccccttcagcccaatcggatc             <  2:1016725‑M1/101‑39 (MQ=255)
                                      gggTATAAATTTATATCAACCAAACCTTGCGGATCTACATTTATGACCGGATTCAACGGATACtgataaaaattccatccccccttcagcccaatcggatc             <  1:1562342‑M1/101‑39 (MQ=255)
                                       ggTATAAATTTATATCAACCAAACCTTGCGGATCTACATTTATGACCGGATTCAACGGATACtgataaaaattccatccccccttcagcccaatcggatcc            <  1:401661‑M1/101‑40 (MQ=255)
                                        gTATAAATTTATATCAACCAACCCTTGCGGATCTACATTTATGACCGGATTCAACGGATACtgataaaaattccatccccccttcagcccaatcggatcct           <  2:595178‑M1/101‑41 (MQ=255)
                                          ataAATTTATATCAACCAAACCTTGCGGATCTACATTTATGACCGGATTCAACGGATACtgataaaaattccatccccccttcagcccaatcggatcctga         >  1:849301‑M1/1‑59 (MQ=255)
                                              aTTTATATCAACCAAACCTTGCGGATCTACATTTATGACCGGATTCAACGGATACtgataaaaattccatccccccttcagcccaatcggatcctgactga     >  2:29972‑M1/1‑55 (MQ=255)
                                                 tataTCAACCAAACCTTGCGGATCTACATTTATGACCGGATTCAACGGATACtgataaaaattccatccccccttcagcccaatcggatcctgactgatat  <  2:376737‑M1/101‑50 (MQ=255)
                                                 tataTCAACCAAACCTTGCGGATCTACATTTATGACCGGATTCAACGGATACtgataaaaattccatccccccttcagcccaatcggatcctgactgatat  <  2:1495211‑M1/101‑50 (MQ=255)
                                                 tataTCAACCAAACCTTGCGGATCTACATTTATGACCGGATTCAACGGATACtgataaaaattccatccccccttcagcccaatcggatcctgactgataa  >  1:1690256‑M1/1‑52 (MQ=255)
                                                                                                    |                                                 
TAATCTCATCAGCTACAGAATGGATAAGATCACTTTCGGGGTATAAATTTATATCAACCAAACCTTGCGGATCTACATTTATGACCGGATTCAACGGATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  186/6514‑6614

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.