| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | 18 | = 44693 | 0 (0.000) | 33 (0.610) | 27/162 | 1.0 | 98.5% | intergenic (–/–) | –/– | –/– |
| ? | 57 | = 26042 | 1 (0.020) | intergenic (–/–) | –/– | –/– | |||||
CCTGCCAGCGTTTAAAGACGCGCTGCGCTGGAACGAAGTGTATTACGGATTTCGTCGCTAAGTAGTCGCATCAGGTGTGTAACGCCTGATGCGACGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > 18/44595‑44693 | ccTGCCAGCGTTTAAAGACGCGCTGCGCTGGAACGAAGTGTATTACGGATTTCGTCGCTAAGTAGTCGCATCAGGTGTGTAACGCCTGATGCGACGCTGac > 1:937996‑M1/1‑99 (MQ=255)ccTGCCAGCGTTTAAAGACGCGCTGCGCTGGAACGAAGTGTATTACGGATTTCGTCGCTAAGTAGTCGCATCAGGTGTGTAACGCCTGATGCGACGCTGac > 2:265157‑M1/1‑99 (MQ=255) cTGCCAGCGTTTAAAGACGCGCTGCGCTGGAACGAAGTGTATTACGGATTTCGTCGCTAAGTAGTCGCATCAGGTGTGTAACGCCTGATGCGACGCTgacg < 2:261228/101‑4 (MQ=255) ccAGCGTTTAAAGACGCGCTGCGCTGGAACGAAGTGTATTACGGATTTCGTCGCTAAGTAGTCGCATCAGGTGTGTAACGCCTGATGCGACGCTGacgcgt > 2:1376487‑M1/1‑95 (MQ=255) ccAGCGTTTAAAGACGCGCTGCGCTGGAACGAAGTGTATTACGGATTTCGTCGCTAAGTAGTCGCATCAGGTGTGTAACGCCTGATGCGACGCTGacgcgt > 1:613625‑M1/1‑95 (MQ=255) aaaGACGCGCTGCGCTGGAACGAAGTGTATTACGGATTTCGTCGCTAAGTAGTCGCATCAGGTGTGTAACGCCTGATGCGACGCTGacgcgtcttatcagg < 2:1629742‑M1/101‑16 (MQ=255) aaGACGCGCTGCGCTGGAACGAAGTGTATTACGGATTTCGTCGCTAAGTAGTCGCATCAGGTGTGTAACGCCTGATGCGACGCTGacgcgtcttatcaggc > 2:178285‑M1/1‑85 (MQ=255) aGACGCGCTGCGCTGGAACGAAGTGTATTACGGATTTCGTCGCTAAGTAGTCGCATCAGGTGTGTAACGCCTGATGCGACGCTGacgcgtcttatcaggcc < 1:267084‑M1/101‑18 (MQ=255) gcgctgcgctGGAACGAAGTGTATTACGGATTTCGTCGCTAAGTAGTCGCATCAGGTGTGTAACGCCTGATGCGACGCTGacgcgtcttatcaggcctaca < 1:1292958‑M1/101‑22 (MQ=255) cgctgcgctgGAACGAAGTGTATTACGGATTTCGTCGCTAAGTAGTCGCATCAGGTGTGTAACGCCTGATGCGACGCTGacgcgtcttatcaggcctacac > 2:671339‑M1/1‑79 (MQ=255) gctgcgctgGAACGAAGTGTATTACGGATTTCGTCGCTAAGTAGTCGCATCAGGTGTGTAACGCCTGATGCGACGCTGacgcgtcttatcaggcctacacg > 2:452747‑M1/1‑78 (MQ=255) tgGAACGAAGTGTATTACGGATTTCGTCGCTAAGTAGTCGCATCAGGTGTGTAACGCCTGATGCGACGCTGacgcgtcttatcaggcctacacgctgcgat > 1:565683‑M1/1‑71 (MQ=255) tgGAACGAAGTGTATTACGGATTTCGTCGCTAAGTAGTCGCATCAGGTGTGTAACGCCTGATGCGACGCTGacgcgtcttatcaggcctacacgctgcgat < 2:260615‑M1/101‑31 (MQ=255) ggAACGAAGTGTATTACGGATTTCGTCGCTAAGTAGTCGCATCAGGTGTGTAACGCCTGATGCGACGCTGacgcgtcttatcaggcctacacgctgcgatt < 1:1413929‑M1/101‑32 (MQ=255) aaCGAAGTGTATTACGGATTTCGTCGCTAAGTAGTCGCATCAGGTGTGTAACGCCTGATGCGACGCTGacgcgtcttatcaggcctacacgctgcgatttt < 1:265157‑M1/101‑34 (MQ=255) ctaagaGTATTACGGATTTCGTCGCTAAGTAGTCGCATCAGGTGTGTAACGCCTGATGCGACGCTGacgcgtcttatcaggcctacacgctgcgattttgt > 2:73084‑M1/3‑66 (MQ=255) cGAAGTGTATTACGGATTTCGTCGCTAAGTAGTCGCATCAGGTGTGTAACGCCTGATGCGACGCTGacgcgtcttatcaggcctacacgctgcgattttgt > 1:1509186‑M1/1‑66 (MQ=255) gAAGTGTATTACGGATTTCGTCGCTAAGTAGTCGCATCAGGTGTGTAACGCCTGATGCGACGCTGacgcgtcttatcaggcctacacgctgcgattttgta > 1:1683659‑M1/1‑65 (MQ=255) aaGTGTATTACGGATTTCGTCGCTAAGTAGTCGCATCAGGTGTGTAACGCCTGATGCGACGCTGacgcgtcttatcaggcctacacgctgcgattttgtag < 2:793750‑M1/101‑38 (MQ=255) aaGTGTATTACGGATTTCGTCGCTAAGTAGTCGCATCAGGTGTGTAACGCCTGATGCGACGCTGacgcgtcttatcaggcctacacgctgcgattttgtag > 2:204611‑M1/1‑64 (MQ=255) aaGTGTATTACGGATTTCGTCGCTAAGTAGTCGCATCAGGTGTGTAACGCCTGATGCGACGCTGacgcgtcttatcaggcctacacgctgcgattttgtag < 2:1206344‑M1/101‑38 (MQ=255) aGTGTATTACGGATTTCGTCGCTAAGTAGTCGCAACAGGTGTGTAACGCCTGATGCGATGCTGacgcgtcttatcaggcctacacgctgcgattttgtagg < 2:151262‑M1/101‑39 (MQ=255) gtATTACGGATTTCGTCGCTAAGTAGTCGCATCAGGTGTGTAACGCCTGATGCGACGCTGacgcgtcttatcaggcctacacgctgcgattttgtaggccg > 1:97556‑M1/1‑60 (MQ=255) aTTACGGATTTCGTCGCTAAGTAGTCGCATCAGGTGTGTAACGCCTGATGCGACGCTGacgcgtcttatcaggcctacacgctgcgattttgtaggccgga > 2:167770‑M1/1‑58 (MQ=255) aCGGATTTCGTCGCTAAGTAGTCGCATCAGGTGTGTAACGCCTGATGCGACGCTGacgcgtcttatcaggcctacacgctgcgattttgtaggccggataa > 2:98058‑M1/1‑55 (MQ=255) aTTTCGTCGCTAAGTAGTCGCATCAGGTGTGTAACGCCTGATGCGACGCTGacgcgtcttatcaggcctacacgctgcgattttgtaggccggataagcaa > 2:1302388‑M1/1‑51 (MQ=255) tttCGTCGCTAAGTAGTCGCATCAGGTGTGTAACGCCTGATGCGACGCTGacgcgtcttatcaggcctacacgctgcgattttgtaggccggataagcaaa < 1:622897‑M1/101‑52 (MQ=255) ttCGTCGCTAAGTAGTCGCATCAGGTGTGTAACGCCTGATGCGACGCTGacgcgtcttatcaggcctacacgctgcgattttgtaggccggataagcaaag > 1:1160316‑M1/1‑49 (MQ=255) tccgtcgctAAGTAGTCGCATCAGGTGTGTACCGCCTGATGCGACGCTGacgcgtcttatcaggcctacacgctgcgattttgtaggccggataagcaaag < 2:230330‑M1/99‑53 (MQ=255) cgtcgCTAAGTAGTCGCATCAGGTGTGTAACGCCTGATGCGACGCTGacgcgtcttatcaggcctacacgctgcgattttgtaggccggataagcaaagcg < 1:871441‑M1/101‑55 (MQ=255) aaGTAGTCGCATCAGGTGTGTAACGCCTGATGCGACGCTGacgcgtcttatcaggcctacacgctgcgattttgtaggccggataagcaaagcgcatccgg > 1:1497344‑M1/1‑40 (MQ=255) gtagtCGCATCAGGTGTGTAACGCCTGATGCGACGCTGacgcgtcttatcaggcctacacgctgcgattttgtaggccggataagcaaagcgcatccggca < 2:133522‑M1/101‑64 (MQ=255) agtCGCATCAGGTGTGTAACGCCTGATGCGACGCTGacgcgtcttatcaggcctacacgctgcgattttgtaggccggataagcaaagcgcatccggcatt > 2:233486‑M1/1‑36 (MQ=255) cATCAGGTGTGTAACGCCTGATGCGACGCTGacgcgtcttatcaggcctacacgctgcgattttgtaggccggataagcaaagcgcatccggcattcaacg > 2:504472‑M1/1‑31 (MQ=255) cATCAGGTGTGTAACGCCTGATGCGACGCTGacgcgtcttatcaggcctacacgctgcgattttgtaggccggataagcaaagcgcatccggcattcaacg < 1:1362941‑M1/101‑71 (MQ=255) aTCAGGTGTGTAACGCCTGATGCGACGCTGacgcgtcttatcaggcctacacgctgcgattttgtaggccggataagcaaagcgcatccggcattcaacgc > 1:1659515‑M1/1‑30 (MQ=255) aaCGCCTGATGCGACGCTGgcgcgtcttatcaggcctacacgctgcgattttgtaggccggataagcaaagcgcatccggcacgaaggagtcaacatgtta > 2:352606‑M1/1‑19 (MQ=255) aaCGCCTGATGCGACGCTGgcgcgtcttatcaggcctacacgctgcgattttgtaggccggataagcaaagcgcatccggcacgaaggagtcaacatgtta > 1:983070‑M1/1‑19 (MQ=255) ccTGATGCGACGCTGgcgcgtcttatcaggcctacccgctgcgattttgtaggccggataagcaaagcgcatccggcacgaaggagtcaacatgttagaag < 2:1676448‑M1/101‑87 (MQ=255) ccTGATGCGACGCTGgcgcgtcttatcaggcctacacgctgcgattttgtaggccggataagcaaagcgcatccggcacgaaggagtcaacatgttagaag > 1:847964‑M1/1‑15 (MQ=255) gCGACGCTGgcgcgtcttatcaggcctacacgctgcgattttgtaggccggataagcaaagcgcatccggcacgaaggagtcaacatgttagaagatctca < 1:817651‑M1/101‑93 (MQ=255) tGgcgcgtcttatcaggcctacacgctgcgattttgtaggccggataagcaaagcgcatccggcacgaaggagtcaacatgttagaagatctcaaacgcca > 2:570995‑M1/1‑2 (MQ=255) ggcgcgtcttatcaggcctacacgctgcgattttgtaggccggataagcaaagcgcatccggcacgaaggagtcaacatgttagaagatctcaaacgccag > 2:1030925‑M1/1‑1 (MQ=255) ggcgcgtcttatcaggcctacacgctgcgattttgtaggccggataagcaaagcgcatccggcacgaaggagtcaacatgttagaagatctcaaacgccag > 1:1038028‑M1/1‑1 (MQ=255) | CCTGCCAGCGTTTAAAGACGCGCTGCGCTGGAACGAAGTGTATTACGGATTTCGTCGCTAAGTAGTCGCATCAGGTGTGTAACGCCTGATGCGACGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > 18/44595‑44693 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |