New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? 150 = 98920 (0.000)28 (0.420) 19/200 2.9 47.9% intergenic (–/–) –/– –/–
?9 12520 = 61 (0.920)intergenic (–/–) –/– –/–

ACCGTGAAACCTTCGCGGATATTGGTCAGACTCTGGCAAAATATTTTGGTACTTCTGATATGGAATATGGCAAAGCCATGTTCTGATAATGGGTGCGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  150/9793‑9892
                                                                                                   |                                                     
aCCGTGAAACCTTCGCGGATATTGGTCAGACTCTGGCAAAATATTTTGGTACTTCTGATATGGAATATGGCAAAGCCATGTTCTGATAATGGGTGCGGCTt                                                      <  2:527752‑M1/101‑2 (MQ=255)
   gTGAAACCTTCGCGGATATTGGTCAGACTCTGGCAAAATATTTTGGTACTTCTGATATGGAATATGGCAAAGCCATGTTCTGATAATGGGTGCGGCTtgat                                                   <  1:1136966‑M1/101‑5 (MQ=255)
   gTGAAACCTTCGCGGATATTGGTCAGACTCTGGCAAAATATTTTGGTACTTCTGATATGGAATATGGCAAAGCCATGTTCTGATAATGGGTGCGGCTtgat                                                   <  2:1435974‑M1/101‑5 (MQ=255)
   gTGAAACCTTCGCGGATATTGGTCAGACTCTGGCAAAATATTTTGGTACTTCTGATATGGAATATGGCAAAGCCATGTTCTGATAATGGGTGCGGCTtgat                                                   <  1:385819‑M1/101‑5 (MQ=255)
    tGAAACCTTCGCGGATATTGGTCAGACTCTGGCAAAATATTTTGGTACTTCTGATATGGAATATGGCAAAGCCATGTTCTGATAATGGGTGCGGCTtgatg                                                  >  1:1708911‑M1/1‑96 (MQ=255)
          cTTCGCGGATATTGGTCAGACTCTGGCAAAATATTTTGGTACTTCTGATATGGAATATGGCAAAGCCATGTTCTGATAATGGGTGCGGCTtgatgccctca                                            <  1:764077‑M1/101‑12 (MQ=255)
          cTTCGCGGATATTGGTCAGACTCTGGCAAAATATTTTGGTACTTCTGATATGGAATATGGCAAAGCCATGTTCTGATAATGGGTGCGGCTtgatgaccccc                                            >  2:1022819‑M1/1‑90 (MQ=255)
             cgcgGATATTGGTCAGACTCTGGCAAAATATTTTGGTACTTCTGATATGGAATATGGCAAAGCCATGTTCTGATAATGGGTGCGGCTtgatgccctcaccc                                         <  1:573739‑M1/101‑15 (MQ=255)
                ggATATTGGTCAGACTCTGGCAAAATATTTTGGTACTTCTGATATGGAATATGGCAAAGCCATGTTCTGATAATGGGTGCGGCTtgatgccctcaccccgg                                      <  1:883920‑M1/101‑18 (MQ=255)
                    atTGGTCAGACTCTGGCAAAATATTTTGGTACTTCTGATATGGAATATGGCAAAGCCATGTTCTGATAATGGGTGCGGCTtgatgccctcaccccggccct                                  <  2:278585‑M1/101‑22 (MQ=255)
                      tGGTCAGACTCTGGCAAAATATTTTGGTACTTCTGATATGGAATATGGCAAAGCCATGTTCTGATAATGGGTGCGGCTtgatgccctcaccccggccctct                                <  2:913713‑M1/101‑24 (MQ=255)
                      tGGTCAGACTCTGGCAAAATATTTTGGTACTTCTGATATGGAATATGGCAAAGCCATGTTCTGATAATGGGTGCGGCTtgatgccctcacccccgccctcc                                >  2:275094‑M1/1‑78 (MQ=255)
                       ggTCAGACTCTGGCAAAATATTTTGGTACTTCTGATATGGAATATGGCAAAGCCATGTTCTGATAATGGGTGCGGCTtgatgccctcaccccggccctctc                               <  1:94599‑M1/101‑25 (MQ=255)
                             aCTCTGGCAAAATATTTTGGTACTTCTGATATGGAATATGGCAAAGCCATGTTCTGATAATGGGTGCGGCTtgatgccctcaccccggccctctcccacag                         <  1:1631210‑M1/101‑31 (MQ=255)
                               tctGGCAAAATATTTTGGTACTTCTGATATGGAATATGGCAAAGCCATGTTCTGATAATGGGTGCGGCTtgatggcctcccccccgccccctcccccaagg                       >  2:144839‑M1/1‑69 (MQ=255)
                               tctGGCAAAATATTTTGGTACTTCTGATATGGAATATGGCAAAGCCATGTTCTGATAATGGGTGCGGCTtgatgccctcaccccggccctctcccacaggg                       <  1:1466797‑M1/101‑33 (MQ=255)
                                 tGGCAAAATATTTTGGTACTTCTGATATGGAATATGGCAAAGCCATGTTCTGATAATGGGTGCGGCTtgattgccccccccccccccccctcccccccggg                     >  2:392456‑M1/1‑67 (MQ=255)
                                 tGGCAAAATATTTTGGTACTTCTGATATGGAATATGGCAAAGCCATGTTCTGATAATGGGTGCGGCTtgatgccctccccccggccctctcccacagggag                     <  1:195187‑M1/101‑35 (MQ=255)
                                   gCAAAATATTTTGGTACTTCTGATATGGAATATGGCAAAGCCATGTTCTGATAATGGGTGCGGCTtgatgccctcaccccggccctctcccacagggagag                   <  1:625017‑M1/101‑37 (MQ=255)
                                    cAAAATATTTTGGTACTTCTGATATGGAATATGGCAAAGCCATGTTCTGATAATGGGTGCGGCTtgatgccctcaccccggccctctcccacagggagagg                  <  1:229027‑M1/101‑38 (MQ=255)
                                    cAAAATATTTTGGTACTTCTGATATGGAATATGGCAAAGCCATGTTCTGATAATGGGTGCGGCTtgatgccctcaccccggccctctcccacagggagagg                  <  1:1291778‑M1/101‑38 (MQ=255)
                                      aaaTATTTTGGTACTTCTGATATGGAATATGGCAAAGCCATGTTCTGATAATGGGTGCGGCTtgatgccctcaccccggccctctcccacagggagagggt                <  2:1027970‑M1/101‑40 (MQ=255)
                                          atTTTGGTACTTCTGATATGGAATATGGCAAAGCCATGTTCTGATAATGGGTGCGGCTtgatgccctcaccccggccctctcccacagggagagggtgaaa            <  1:1627742‑M1/101‑44 (MQ=255)
                                          atTTTGGTACTTCTGATATGGAATATGGCAAAGCCATGTTCTGATAATGGGTGCGGCTtgatgccctcaccccggccccctcccacagggagaggggggaa            >  2:547109‑M1/1‑58 (MQ=255)
                                            tttGGTACTTCTGATATGGAATATGGCAAAGCCATGTTCTGATAATGGGTGCGGCTtgatgccctcaccccggccctctcccacagggagagggtgaaaac          <  1:1544736‑M1/101‑46 (MQ=255)
                                               ggTACTTCTGATATGGAATATGGCAAAGCCATGTTCTGATAATGGGTGCGGCTtgatgccctcaccccggccctctcccacagggagagggtgaaaacatg       <  2:321460‑M1/101‑49 (MQ=255)
                                                  aCTTCTGATATGGAATATGGCAAAGCCATGTTCTGATAATGGGTGCGGCTtgatgccctcaccccggccctctcccacagggagagggtgaaaacatgttg    <  2:532874‑M1/101‑52 (MQ=255)
                                                    ttCTGATATGGAATATGGCAAAGCCATGTTCTGATAATGGGTGCGGCTtgatgccctcaccccggccctctcccacagggagagggtgaaaacatgttgat  <  1:8834‑M1/101‑54 (MQ=255)
                                                                                                   |                                                     
ACCGTGAAACCTTCGCGGATATTGGTCAGACTCTGGCAAAATATTTTGGTACTTCTGATATGGAATATGGCAAAGCCATGTTCTGATAATGGGTGCGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  150/9793‑9892

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.