| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | 106 | = 15781 | 0 (0.000) | 53 (0.970) +GATACACGGATGGTCAGC |
46/164 | 0.1 | 100% | intergenic (–/–) | –/– | –/– |
| ? | 37 | = 32985 | 0 (0.000) | intergenic (–/–) | –/– | –/– | |||||
CGATTTCAGTCAAATCTAATTACATAGATTGAGTGAAGGTACGAGTAATAACGTCCTGCTGCTGTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > 106/15681‑15781 | cGATTTCAGTCAAATCTAATTACATAGATTGAGTGAAGGTACGAGTAATAACGTCCTGCTGCTGTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCa > 1:1675466/1‑101 (MQ=255)cGATTTCAGTCAAATCTAATTACATAGATTGAGTGAAGGTACGAGTAATAACGTCCTGCTGCTGTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCa > 2:1505881/1‑101 (MQ=255) gATTTCAGTCAAATCTAATTACATAGATTGAGTGAAGGTACGAGTAATAACGTCCTGCTGCTGTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAg > 2:6702‑M1/1‑100 (MQ=255) aTTTCAGTCAAATCTAATTACATAGATTGAGTGAAGGTACGAGTAATAACGTCCTGCTGCTGTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAga > 1:260750‑M1/1‑99 (MQ=255) ttCAGTCAAATCTAATTACATAGATTGAGTGAAGGTACGAGTAATAACGTCCTGCTGCTGTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAgata > 1:1415737‑M1/1‑97 (MQ=255) ttCAGTCAAATCTAATTACATAGATTGAGTGAAGGTACGAGTAATAACGTCCTGCTGCTGTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAgata > 2:1358093‑M1/1‑97 (MQ=255) ttCAGTCAAATCTAATTACATAGATTGAGTGAAGGTACGAGTAATAACGTCCTGCTGCTGTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAgata > 1:9770‑M1/1‑97 (MQ=255) aGTCAAATCTAATTACATAGATTGAGTGAAGGTACGAGTAATAACGTCCTGCTGCTGTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAgatacac < 1:112038‑M1/101‑8 (MQ=255) aGTCAAATCTAATTACATAGATTGAGTGAAGGTACGAGTAATAACGTCCTGCTGCTGTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAgatacac < 2:660153‑M1/101‑8 (MQ=255) gTCAAATCTAATTACATAGATTGAGTGAAGGTACGAGTAATAACGTCCTGCTGCTGTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAgatacacg > 1:1028882‑M1/1‑93 (MQ=255) aaaTCTAATTACATAGATTGAGTGAAGGTACGAGTAATAACGTCCTGCTGCTGTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAgatacacggat > 1:1364921‑M1/1‑90 (MQ=255) aTCTAATTACATAGATTGAGTGAAGGTACGAGTAATAACGTCCTGCTGCTGTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAgatacacggatgg < 1:1240251‑M1/101‑14 (MQ=255) aaTTACATAGATTGAGTGAAGGTACGAGTAATAACGTCCTGCTGCTGTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAgatacacggatggtcag < 2:570544‑M1/101‑18 (MQ=255) aTTACATAGATTGAGTGAAGGTACGAGTAATAACGTCCTGCTGCTGTTCTTTAGTCAGCGAGTTGCAACGTACTGCGTAGCCAgatacacggatggtcagc > 1:1412276‑M1/1‑83 (MQ=255) ttACATAGATTGAGGGAAGGTACGAGGAATAACGTCCTGCTGCTGTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAgatacacggatgctcagct > 1:849413‑M1/1‑82 (MQ=255) tACATAGATTGAGTGAAGGTACGAGTAATAACGTCCTGCTGCTGTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAgatacacggatggtcagctg > 1:782118‑M1/1‑81 (MQ=255) tACATAGATTGAGTGAAGGTACGAGTAATAACGTCCTGCTGCTGTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAgatacacggatggtcagctg < 2:180314‑M1/101‑21 (MQ=255) tACATAGATTGAGTGAAGGTACGAGTAATAACGTCCTGCTGCTGTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAgatacacggatggtcagctc > 2:1086151‑M1/1‑81 (MQ=255) aCATAGATTGAGTGAAGGTACGAGTAATAACGTCCTGCTGCTGTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAgatacacggatggtcagctgc < 1:432299‑M1/101‑22 (MQ=255) aTAGATTGAGTGAAGGTACGAGTAATACCGTCCTGCTGCTGTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAgatacacggatggtcagctgcgg < 1:1111636‑M1/101‑24 (MQ=255) aTAGATTGAGTGAAGGTACGAGTAATAACGTCCTGCTGCTGTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAgatacacggatggtcagctgcgg > 2:1682930‑M1/1‑78 (MQ=255) aTAGATTGAGTGAAGGTACGAGTAATAACGTCCTGCTGCTGTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAgatacacggatggtcagctgcgg > 1:1474017‑M1/1‑78 (MQ=255) aGATTGAGTGAAGGTACGAGTAATAACGTCCTGCTGCTGTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAgatacacggatggtcagctgcggat > 2:1654659‑M1/1‑76 (MQ=255) ttGAGTGAAGGTACGAGTAATAACGTCCTGCTGCTGTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAgatacacggatggtcagctgcggatatt > 1:577725‑M1/1‑73 (MQ=255) tGAAGGTACGAGTAATAACGTCCTGCTGCTGTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAgatacacggatggtcagctgcggatatttttcc > 1:705623‑M1/1‑68 (MQ=255) gAAGGTACGAGTAATAACGTCCTGCTGCTGTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAgatacacggatggtcagctgcggatatttttccg < 1:1093246‑M1/101‑35 (MQ=255) aaGGTACGAGTAATAACGTCCTGCTGCTGTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAgatacacggatggtcagctgcggatatttttccgg > 1:1093112‑M1/1‑66 (MQ=255) gTACGAGTAATAACGTCCTGCTGCTGTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAgatacacggatggtcagctgcggatatttttccgggtt > 2:1661581‑M1/1‑63 (MQ=255) tACGAGTAATAACGTCCTGCTGCTGTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAgatacacggatggtcagctgcggatattttcccgggttt < 1:1055873‑M1/101‑40 (MQ=255) aCGAGTAATAACGTCCTGCTGCTGTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAgatacacggatggtcagctgcggatatttttccgggtttt > 1:630541‑M1/1‑61 (MQ=255) cGAGTAATAACGTCCTGCTGCTGTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAgatacacggatggtcagctgcggatatttttccgggttttc > 2:1003638‑M1/1‑60 (MQ=255) gAGTAATAACGTCCTGCTGCTGTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAgatacacggatggtcagctgcggatatttttccgggatttcc > 1:442843‑M1/1‑59 (MQ=255) aGTAATAACGTCCTGCTGCTGTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAgatacacggatggtcagctgcggatatttttccgggttttcca > 2:204508‑M1/1‑58 (MQ=255) gTAATAACGTCCTGCTGCTGTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAgatacacggatggtcagctgcggatatttttccgggttttccat > 2:394080‑M1/1‑57 (MQ=255) aataaCGTCCTGCTGCTGTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAgatacacggatggtcagctgcggatatttttccgggttttccatcg < 1:171522‑M1/101‑47 (MQ=255) ataaCGTCCTGCTGCTGTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAgatacacggatggtcagctgcggatatttttccgggttttccatcgg > 1:1621424‑M1/1‑54 (MQ=255) ataaCGTCCTGCTGCTGTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAgatacacggatggtcagctgcggatatttttccgggtgttacatcgc > 2:1201862‑M1/1‑54 (MQ=255) aaCGTCCTGCTGCTGTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAgatacacggatggtcagctgcggatatttttccgggttttccatcgcgt > 2:925067‑M1/1‑52 (MQ=255) aCGTCCTGCTGCTGTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAgatacacggatggtcagctgcggatatttttccgggttttccatcgcgtc < 1:769803‑M1/101‑51 (MQ=255) cGTCCTGCTGCTGTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAgatacacggatggtcagctgcggatatttttccgggttttccatcgcgtcg > 2:1299134‑M1/1‑50 (MQ=255) tCCTGCTGCTGTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAgatacacggatggtcagctgcggatatttttccgggttttccatcgcgtcgag > 1:1621457‑M1/1‑48 (MQ=255) ctgctgctgTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAgatacacggatggtcagctgcggatatttttccgggttttccatcgcgtcgagca < 2:1695922‑M1/101‑56 (MQ=255) ctgctgctgTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAgatacacggatggtcagctgcggatatttttccgggttttccatcgcgtcgagca > 2:1066675‑M1/1‑46 (MQ=255) ctgctgTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAgatacacggagggtcagctgcggatatttttccgggttttccatcgcggcgtgcagca > 1:237456‑M1/1‑43 (MQ=255) gctgTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAgatacacggatggtcagctgcggatatttttccgggttttccatcgcgtcgagcagcatt > 2:1088030‑M1/1‑41 (MQ=255) ctgTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAgatacacggatggtcagctgcggatatttttccgggttttccatcgcgtcgagcagcattt < 2:396647‑M1/101‑62 (MQ=255) tgTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAgatacacggatggtcagctgcggatatttttccgggttttccatcgcgtcgagcagcatttc > 1:671988‑M1/1‑39 (MQ=255) gTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCAgatacacggatggtcagctgcggatatttttccgggttttccatcgcgtcgagcagcatttca < 1:1110159‑M1/101‑64 (MQ=255) aGTCAGCGAGTTGAAACGTACTGCGTAGCCAgatacacggatggtcagctgcggatatttttccgggttttccatcgcgtcgagcagcatttcacggttca > 2:1274536‑M1/1‑31 (MQ=255) gTCAGCGAGTTGAAACGTACTGCGTAGCCAgatacacggatggtcagctgcggatatttttccgggttttccatcgcgtcgagcagcatttcacggttcat < 2:1028877‑M1/101‑72 (MQ=255) tCAGCGAGTTGAAACGTACTGCGTAGCCAgatacacggatggtcagctgcggatatttttccgggttttccatcgcgtcgagcagcatttcacggttcatc < 1:1299140‑M1/101‑73 (MQ=255) cAGCGAGTTGAAACGTACTGCGTAGCCAgatacacggatggtcagctgcggatatttttccgggttttccatcgcgtcgagcagcatttcacggttcatca > 1:49424‑M1/1‑28 (MQ=255) aGCGAGTTGAAACGTACTGCGTAGCCAgatacacggatggtcagctgcggatatttttccgggttttccatcgcgtcgagcagcatttcacggttcatcac < 1:885002‑M1/101‑75 (MQ=255) gAGTTGAAACGTACTGCGTAGCCAgatacacggatggtcagctgcggatatttttccgggttttccatcgcgtcgagcagcatttcacggttcatcacgtt > 1:1709296‑M1/1‑24 (MQ=255) aGTTGAAACGTACTGCGTAGCCAgatacacggatggtcagctgcggatatttttccgggttttccatcgcgtcgagcagcatttcacggttcatcacgtta > 1:842526‑M1/1‑23 (MQ=255) aGTTGAAACGTACTGCGTAGCCAgatacacggatggtcagctgcggatatttttccgggttttccatcgcgtcgagcagcatttcacggttcatcacgtta > 1:692958‑M1/1‑23 (MQ=255) gAAACGTACTGCGTAGCCAgatacacggatggtcagctgcggatatttttccgggttttccatcgcgtcgagcagcatttcacggttcatcacgttaacgt > 1:1251477‑M1/1‑19 (MQ=255) gAAACGTACTGCGTAGCCAgatacacggatggtcagctgcggatatttttccgggttttccatcgcgtcgagcagcatttcacggttcatcacgttaacgt < 2:1675460‑M1/101‑83 (MQ=255) aaCGTACTGCGTAGCCAgatacacggatggtcagctgcggatatttttccgggttttccatcgcgtcgagcagcatttcacggttcatcacgttaacgttc < 1:1088035‑M1/101‑85 (MQ=255) aaCGTACTGCGTAGCCAgatacacggatggtcagctgcggatatttttccgggttttccatcgcgtcgagcagcatttcacggttcatcacgttaacgttc < 2:260750‑M1/101‑85 (MQ=255) cGTACTGCGTAGCCAgatacacggatggtcagctgcggatatttttccgggttttccatcgcgtcgagcagcatttcacggttcatcacgttaacgttcag < 2:256531‑M1/101‑87 (MQ=255) gTACTGCGTAGCCAgatacacggatggtcagctgcggatatttttccgggttttccatcgcgtcgagcagcatttcacggttcatcacgttaacgttcagg > 1:20546‑M1/1‑14 (MQ=255) tACTGCGTAGCCAgatacacggatggtcagctgcggatatttttccgggttttccatcgcgtcgagcagcatttcacggttcatcacgttaacgttcaggt > 2:581298‑M1/1‑13 (MQ=255) tACTGCGTAGCCAgatacacggatggtcagctgcggatatttttccgggttttccatcgcgtcgagcagcatttcacggttcatcacgttaacgttcaggt > 1:660468‑M1/1‑13 (MQ=255) tAGCCAgatacacggatggtcagctgcggatatttttccgggttttccatcgcgtcgagcagcatttcacggttcatcacgttaacgttcaggtgctgacc < 2:594764‑M1/101‑96 (MQ=255) aGCCAgatacacggatggtcagctgcggatatttttccgggttttccatcgcgtcgagcagcatttcacggttcatcacgttaacgttcaggtgctgacca > 2:752238‑M1/1‑5 (MQ=255) aGCCAgatacacggatggtcagctgcggatatttttccgggttttccatcgcgtcgagcagcatttcacggttcatcacgttaacgttcaggtgctgacca > 2:263565‑M1/1‑5 (MQ=255) | CGATTTCAGTCAAATCTAATTACATAGATTGAGTGAAGGTACGAGTAATAACGTCCTGCTGCTGTTCTTTAGTCAGCGAGTTGAAACGTACTGCGTAGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > 106/15681‑15781 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |