New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	96	17075 =	46 (0.690)	27 (0.590) +TGCAGATGCCTGATGCGACGCTTGCGCGTCT	15/138	2.0	63.0%	intergenic (–/–)	–/–	–/–
	?	96	= 17144	0 (0.000)					intergenic (–/–)	–/–	–/–

CCATCCGTAGGCCGGACAAGACGTTCACGCCGCATCCGGCAGTCGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  96/17121‑17075 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TATCAGGCCTACAAATTCTCGCGCCATCCGTAGGCCGGACAAGACGTTCACGCCGCATCCGGCAGTCGTGCTGGGATGGG  <  96/17144‑17065                                                |||||||||||||||||||||||||||||||                                                                                 cgaaatGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGTGCAGATGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCG                                                           <  2:834939/95‑1  gaaatGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGTGCAGATGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCGC                                                          >  1:339031/6‑101  gaaatGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGTGCAGATGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCGC                                                          >  1:732073/6‑101     atGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGTGCAGATGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCGCCAT                                                       >  2:1321356/3‑101           GCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGTGCAGATGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAG                                                 <  1:1168615/101‑1           GCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGTGCAGATGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAG                                                 <  1:309663/101‑1            CCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGTGCAGATGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGG                                                <  2:453222/101‑1              GGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGTGCAGATGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCC                                              <  1:717434/101‑1              GGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGTGCAGATGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCC                                              <  2:12399/101‑1               gatAAGGCGTTCACGCCGCATCCGGCAGTCGTGTGCAGATGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCG                                             <  1:100830/98‑1                atAAGGCGTTCACGCCGCATCCGGCAGTCGTGTGCAGATGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGG                                            >  1:887251/3‑101                 tAAGGCGTTCACGCCGCATCCGGCAGTCGTGTGCAGATGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGA                                           <  1:1350362/100‑1                   aggCGTTCACGCCGCATCCGGCAGTCGTGTGCAGATGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGAta                                         >  2:860909/4‑99                    ggCGTTCACGCCGCATCCGGCAGTCGTGTGCAGATGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAA                                        <  1:33537/99‑1                     gCGTTCACGCCGCATCCGGCAGTCGTGTGCAGATGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAG                                       <  2:1699221/100‑1                       GTTCACGCCGCATCCGGCAGTCGTGTGCAGATGCCTGATGCGACGCTTGCGCGTCTTATCATGACTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGgc                                     >  2:1701086/1‑99                       GTTCACGCCGCATCCGGCAGTCGTGTGCAGATGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGgc                                     <  2:331520/101‑3                       GTTCACGCCGCATCCGGCAGTCGTGTGCAGATGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGgc                                     >  2:1506447/1‑99                        TTCACGCCGCATCCGGCAGTCGTGTGCAGATGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCG                                    >  2:92248/1‑101                          CACGCCGCATCCGGCAGTCGTGTGCAGATGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTT                                  <  1:1708749/101‑1                            CGCCGCATCCGGCAGTCGTGTGCAGATGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTta                                <  2:144271/101‑3                            CGCCGCATCCGGCAGTCGTGTGCAGATGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTta                                <  2:490900/101‑3                              CCGCATCCGGCAGTCGTGTGCAGATGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTTACG                              >  2:135578/1‑101                               CGCATCCGGCAGTCGTGTGCAGATGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTTACGC                             <  1:1425388/101‑1                                 CATCCGGCAGTCGTGTGCAGATGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTTACGCCG                           >  2:344611/1‑101                                      GGCAGTCGTGTGCAGATGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTTACGCCGCATCC                      >  1:1530004/1‑101                                               GTGCAGATGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCGT             >  1:1223864/1‑101                                                     ATGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCGTGCgcag       <  1:36991/101‑5                                                     ATGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCGTGCgcag       >  2:1606175/1‑97                                                       GCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCGTGCgcagat     <  2:769438/101‑7                                                       GCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCGTGCgcagat     <  2:1223859/101‑7                                                          TGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCGTGCgcagatgcc  >  1:822680/1‑92                                                |||||||||||||||||||||||||||||||                                                                                 CCATCCGTAGGCCGGACAAGACGTTCACGCCGCATCCGGCAGTCGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  96/17121‑17075 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TATCAGGCCTACAAATTCTCGCGCCATCCGTAGGCCGGACAAGACGTTCACGCCGCATCCGGCAGTCGTGCTGGGATGGG  <  96/17144‑17065

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.