New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	43	7 =	0 (0.000)	58 (0.880) +A	47/198	0.3	62.3%	intergenic (–/–)	–/–	–/–
	?	5	= 1333	71 (1.070)					intergenic (–/–)	–/–	–/–

TCTTAGTTTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  43/104‑7 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCC  <  5/1333‑1234                                                                                                   |                                                                                                     TCTTAGTTTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCACT                                                                                                    >  1:171546/1‑101   TTAGTTTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCACTAA                                                                                                  >  2:1207994/1‑101    TAGTTTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCACTAAC                                                                                                 >  2:1285075/1‑101     AGTTTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCACTAACT                                                                                                <  1:1643634/101‑1     AGTTTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCACTAACT                                                                                                >  1:813652/1‑101      GTTTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCACTAACTT                                                                                               >  1:368663/1‑101       TTTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCACTAACTTA                                                                                              <  2:366915/101‑1        TTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCACTAACTTAA                                                                                             <  2:1079165/101‑1             TTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCACTAACTTAAGGGTT                                                                                        >  1:66677/1‑101                   CAGGTAATCAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCACTAACTTAAGGGTTGTGGTA                                                                                  <  2:961505/101‑1                     GGTAATCAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCACTAACTTAAGGGTTGTGGTATT                                                                                <  1:1402641/101‑1                      GTAATCAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCACTAACTTAAGGGTTGTGGTATTA                                                                               <  2:1533094/101‑1                      GTAATCAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCACTAACTTAAGGGCTGTGGTATTA                                                                               <  2:1145806/101‑1                       TAATCAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCACTAACTTAAGGGTTGTGGTATTAC                                                                              >  2:690297/1‑101                       TAATCAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCACTAACTTAAGGGTTGTGGTATTAC                                                                              <  1:1691236/101‑1                       TAATCAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCACTAACTTAAGGGTTGTGGTATTAC                                                                              <  1:1534066/101‑1                         ATCAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCACTAACTTAAGGGTTGTGGTATTACGC                                                                            >  1:703336/1‑101                           CAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCACTAACTTAAGGGTTGTGGTATTACGCCT                                                                          <  1:775427/101‑1                              ATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCACTAACTTAAGGGTTGTGGTATTACGCCTGAT                                                                       <  1:608722/101‑1                              ATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCACTAACTTAAGGGTTGTGGTATTACGCCTGAT                                                                       <  2:368450/101‑1                                GACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCACTAACTTAAGGGTTGTGGTATTACGCCTGATAT                                                                     <  1:497896/101‑1                                     GACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCACTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTT                                                                <  2:224721/101‑1                                      ACTGTTCTTCACGCCATCTATTAACATGTTCGTCAGTATATGGGGATGTTTCCCCATAAGCACTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTA                                                               <  2:919793/101‑1                                       CTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCACTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAA                                                              <  2:1389500/101‑1                                         GTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCACTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACG                                                            >  1:986759/1‑101                                         GTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCACTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACG                                                            <  1:257282/101‑1                                          TGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCACTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGT                                                           >  2:1602978/1‑101                                           GCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCACTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTG                                                          <  1:471006/101‑1                                                  GCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCACTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGA                                                   >  2:1312201/1‑101                                                   CCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCACTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAA                                                  >  2:1038352/1‑101                                                   CCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCACTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAA                                                  >  1:490450/1‑101                                                     ATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCACTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATT                                                <  2:88345/101‑1                                                        TATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCACTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACT                                             >  1:913939/1‑101                                                         ATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCACTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTC                                            <  1:1312207/101‑1                                                                 GTACGTCAGTATATGGGGATGTTTCCCCATAAGCACTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATA                                    <  1:807757/101‑1                                                                  TACGTCAGTATATGGGGATGTTTCCCCATAAGCACTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAA                                   <  1:1175865/101‑1                                                                     GTCAGTATATGGGGATGTTTCCCCATAAGCACTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTG                                <  2:1681825/101‑1                                                                     GTCAGTATATGGGGATGTTTCCCCATAAGCACTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTG                                <  1:607586/101‑1                                                                       CAGTATATGGGGATGTTTCCCCATAAGCACTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGT                              <  1:860304/101‑1                                                                        AGTATATGGGGATGTTTCCCCATAAGCACTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTC                             <  2:1598289/101‑1                                                                         GTATATGGGGATGTTTCCCCATAAGCACTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCA                            <  1:855839/101‑1                                                                         GTATATGGGGATGTTTCCCCATAAGCACTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCA                            <  2:551960/101‑1                                                                          TATATGGGGATGTTTCCCCATAAGCACTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAG                           <  2:813647/101‑1                                                                            TATGGGGATGTTTCCCCATAAGCACTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCA                         <  2:979346/101‑1                                                                            TATGGGGATGTTTCCCCATAAGCACTAACTTAAGGGTTGTGGTATCACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCA                         <  2:113711/101‑1                                                                               GGGGATGTTTCCCCATAAGCACTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATT                      >  1:358209/1‑101                                                                                 GGATGTTTCCCCATAAGCACTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTNTCNCGATANCTGGTCAGCAATTCT                    >  2:855884/1‑101                                                                                 GGATGTTTCCCCATAAGCACTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCT                    >  1:302359/1‑101                                                                                 GGATGTTTCCCCATAAGCACTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCT                    <  2:44487/101‑1                                                                                   ATGTTTCCCCATAAGCACTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGG                  <  1:1580854/101‑1                                                                                   ATGTTTCCCCATAAGCACTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGG                  >  2:1657960/1‑101                                                                                    TGTTTCCCCATAAGCACTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGC                 >  1:1321690/1‑101                                                                                    TGTTTCCCCATAAGCACTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGC                 >  1:1180163/1‑101                                                                                          CCCATAAGCACTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATAT           <  2:224254/101‑1                                                                                          CCCATAAGCACTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATAT           <  1:363837/101‑1                                                                                             ATAAGCACTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGG        <  2:339286/101‑1                                                                                                  CACTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGC   >  1:1695951/1‑101                                                                                                  CACTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGC   >  2:393643/1‑101                                                                                                   ACTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCC  >  2:25553/1‑101                                                                                                   ACTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCC  >  1:1139841/1‑101                                                                                                   |                                                                                                     TCTTAGTTTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  43/104‑7 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCC  <  5/1333‑1234

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.