New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	223	= 698	0 (0.000)	64 (1.130) +AGTTGGCAGCATCAC	50/170	0.2	86.2%	intergenic (–/–)	–/–	–/–
	?	36	4798 =	24 (0.360)					intergenic (–/–)	–/–	–/–

TAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  223/620‑698 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAAAAACTTTATTGCTTTATAAGATGCTTGCGCACGTAAGAAGAGAGTGGTATTAAACAAATGTATAATTACTTTATTTTTATTGGGTTAAACTATGAA  >  36/4798‑4896                                                                                |||||||||||||||                                                                                                    TAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAC                                                                                              <  1:355898/101‑1  AGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAACT                                                                                             <  1:47454/101‑1  AGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAACT                                                                                             >  2:159495/1‑101   GCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAACTT                                                                                            >  1:1069191/1‑101          AGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAACTTTATTGCT                                                                                     >  2:1501403/1‑101            GAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAACTTTATTGCTTT                                                                                   <  2:1022882/101‑1                 ACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAACTTTATTGCTTTATAAG                                                                              <  2:448539/101‑1                  CAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAACTTTATTGCTTTATAAGA                                                                             <  1:403830/101‑1                  CAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAACTTTATTGCTTTATAAGA                                                                             <  2:1408816/101‑1                     CTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAACTTTATTGCTTTATAAGATGC                                                                          <  2:1570839/101‑1                     CTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAACTTTATTGCTTTATAAGATGC                                                                          <  1:459377/101‑1                       GATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAACTTTATTGCTTTATAAGATGCTT                                                                        <  1:505325/101‑1                        ATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAACTTTATTGCTTTATAAGATGCTTG                                                                       >  2:1133380/1‑101                        ATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAACTTTATTGCTTTATAAGATGCTTG                                                                       >  2:1575818/1‑101                         TAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAACTTTATTGCTTTATAAGATGCTTGC                                                                      <  2:352358/101‑1                          AGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAACTTTATTGCTTTATAAGATGCTTGCG                                                                     <  1:1264499/101‑1                          AGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAACTTTATTGCTTTATAAGATGCTTGCG                                                                     >  2:1633452/1‑101                                  AAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAACTTTATTGCTTTATAAGATGCTTGCGCACGTAAG                                                             >  1:72456/1‑101                                    GCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAACTTTATTGCTTTATAAGATGCTTGCGCACGTAAGAA                                                           >  1:551088/1‑101                                    GCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAACTTTATTGCTTTATAAGATGCTTGCGCACGTAAGAA                                                           <  1:1542925/101‑1                                      CACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGAAGCGGCACCAAACGATTTATTGCCTTATAAGATGCTTGCGCCCGTAAGAAGA                                                         <  2:1717243/101‑1                                       ACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAACTTTATTGCTTTATAAGATGCTTGCGCACGTAAGAAGAG                                                        >  2:239766/1‑101                                        CTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAACTTTATTGCTTTATAAGATGCTTGCGCACGTAAGAAGAGA                                                       >  2:801151/1‑101                                        CTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAACTTTATTGCTTTATAAGATGCTTGCGCACGTAAGAAGAGA                                                       <  2:1172176/101‑1                                        CTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAACTTTATTGCTTTATAAGATGCTTGCGCACGTAAGAAGAGA                                                       <  2:1126711/101‑1                                        CTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAACTTTATTGCTTTATAAGATGCTTGCGCACGTAAGAAGAGA                                                       <  1:1627274/101‑1                                            AGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAACTTTATTGCTTTATAAGATGCTTGCGCACGTAAGAAGAGAGTGG                                                   >  1:314973/1‑101                                              CACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAACTTTATTGCTTTATAAGATGCTTGCGCACGTAAGAAGAGAGTGGTA                                                 <  1:477924/101‑1                                              CACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAACTTTATTGCTTTATAAGATGCTTGCGCACGTAAGAAGAGAGTGGTA                                                 <  2:1450242/101‑1                                               ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAACTTTATTGCTTTATAAGATGCTTGCGCACGTAAGAAGAGAGTGGTAT                                                >  1:1533563/1‑101                                               ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAACTTTATTGCTTTATAAGATGCTTGCGCACGTAAGAAGAGAGTGGTAT                                                <  1:1133385/101‑1                                                CCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAACTTTATTGCTTTATAAGATGCTTGCGCACGTAAGAAGAGAGTGGTATT                                               <  2:756567/101‑1                                                 CTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAACTTTATTGCTTTATAAGATGCTTGCGCACGTAAGAAGAGAGTGGTATTA                                              <  1:159495/101‑1                                                 CTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAACTTTATTGCTTTATAAGATGCTTGCGCACGTAAGAAGAGAGTGGTATTA                                              >  1:1304902/1‑101                                                 CTCAAAAACACCATCATACACTAAAGCAGTAAGTTGGCAGCATCACCAAAAACTTTATTGTTTTATAAGATGCTTGCGCACGTAAGAAGAGAGTGGTATTA                                              <  1:964634/101‑1                                                    AAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAACTTTATTGCTTTATAAGATGCTTGCGCACGTAAGAAGAGAGTGGTATTAAAC                                           >  2:491477/1‑101                                                     AAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAACTTTATTGCTTTATAAGATGCTTGCGCACGTAAGAAGAGAGTGGTATTAAACA                                          <  1:856405/101‑1                                                      AAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAACTTTATTGCTTTATAAGATGCTTGCGCACGTAAGAAGAGAGTGGTATTAAACAA                                         >  1:504724/1‑101                                                      AAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAACTTTATTGCTTTATAAGATGCTTGCGCACGTAAGAAGAGAGTGGTATTAAACAA                                         >  1:11053/1‑101                                                       AACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAACTTTATTGCTTTATAAGATGCTTGCGCACGTAAGAAGAGAGTGGTATTAAACAAA                                        <  1:1150129/101‑1                                                        ACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAACTTTATTGCTTTATAAGATGCTTGCGCACGTAAGAAGAGAGTGGTATTAAACAAAT                                       <  2:597592/101‑1                                                          ACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAACTTTATTGCTTTATAAGATGCTTGCGCACGTAAGAAGAGAGTGGTATTAAACAAATGT                                     >  1:352252/1‑101                                                            CATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAACTTTATTGCTTTATAAGATGCTTGCGCACGTAAGAAGAGAGTGGTATTAAACAAATGTAT                                   >  2:1309192/1‑101                                                            CATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAACTTTATTGCTTTATAAGATGCTTGCGCACGTAAGAAGAGAGTGGTATTAAACAAATGTAT                                   <  1:466669/101‑1                                                             ATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAACTTTATTGCTTTATAAGATGCTTGCGCACGTAAGAAGAGAGTGGTATTAAACAAATGTATA                                  <  2:979001/101‑1                                                             ATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAACTTTATTGCTTTATAAGATGCTTGCGCACGTAAGAAGAGAGTGGTATTAAACAAATGTATA                                  >  2:132818/1‑101                                                             ATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAACTTTATTGCTTTATAAGATGCTTGCGCACGTAAGAAGAGAGTGGTATTAAACAAATGTATA                                  >  2:517925/1‑101                                                             ATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAACTTTATTGCTTTATAAGATGCTTGCGCACGTAAGAAGAGAGTGGTATTAAACAAATGTATA                                  >  2:466877/1‑101                                                             ATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAACTTTATTGCTTTATAAGATGCTTGCGCACGTAAGAAGAGAGTGGTATTAAACAAATGTATA                                  >  2:845521/1‑101                                                               CATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAACTTTATTGCTTTATAAGATGCTTGCGCACGTAAGAAGAGAGTGGTATTAAACAAATGTATAAT                                <  1:132818/101‑1                                                                ATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAACTTTATTGCTTTATAAGATGCTTGCGCACGTAAGAAGAGAGTGGTATTAAACAAATGTATAATT                               <  2:529345/101‑1                                                                  ACACTAAATCAGTAAGTTGGCAGCATCACCAAAAACTTTATTGCTTTATAAGATGCTTGCGCACGTAAGAAGAGAGTGGTATTAAACAAATGTATAATTAC                             >  1:1017944/1‑101                                                                  ACACTAAATCAGTAAGTTGGCAGCATCACCAAAAACTTTATTGCTTTATAAGATGCTTGCGCACGTAAGAAGAGAGTGGTATTAAACAAATGTATAATTAC                             >  1:841237/1‑101                                                                   CACTAAATCAGTAAGTTGGCAGCATCACCAAAAACTTTATTGCTTTATAAGATGCTTGCGCACGTAAGAAGAGAGTGGTATTAAACAAATGTATAATTACT                            >  2:438608/1‑101                                                                   CACTAAATCAGTAAGTTGGCAGCATCACCAAAAACTTTATTGCTTTATAAGATGCTTGCGCACGTAAGAAGAGAGTGGTATTAAACAAATGTATAATTACT                            <  2:815053/101‑1                                                                   CACTAAATCAGTAAGTTGGCAGCATCACCAAAAACTTTATTGCTTTATAAGATGCTTGCGCACGTAAGAAGAGAGTGGTATTAAACAAATGTATAATTACT                            <  1:1303236/101‑1                                                                    ACTAAATCAGTAAGTTGGCAGCATCACCAAAAACTTTATTGCTTTATAAGATGCTTGCGCACGTAAGAAGAGAGTGGTATTAAACAAATGTATAATTACTT                           >  2:172515/1‑101                                                                      TAAATCAGTAAGTTGGCAGCATCACCAAAAACTTTATTGCTTTATAAGATGCTTGCGCACGTAAGAAGAGAGTGGTATTAAACAAATGTATAATTACTTTA                         >  1:1068002/1‑101                                                                       AAATCAGTAAGTTGGCAGCATCACCAAAAACTTTATTGCTTTATAAGATGCTTGCGCACGTAAGAAGAGAGTGGTATTAAACAAATGTATAATTACTTTAT                        <  1:1173843/101‑1                                                                        AATCAGTAAGTTGGCAGCATCACCAAAAACTTTATTGCTTTATAAGATGCTTGCGCACGTAAGAAGAGAGTGGTATTAAACAAATGTATAATTACTTTATT                       >  2:1599350/1‑101                                                                         ATCAGTAAGTTGGCAGCATCACCAAAAACTTTATTGCTTTATAAGATGCTTGCGCACGTAAGAAGAGAGTGGTATTAAACAAATGTATAATTACTTTATTT                      >  2:1031672/1‑101                                                                         ATCAGTAAGTTGGCAGCATCACCAAAAACTTTATTGCTTTATAAGATGCTTGCGCACGTAAGAAGAGAGTGGTATTAAACAAATGTATAATTACTTTATTT                      <  2:166902/101‑1                                                                               AAGTTGGCAGCATCACCAAAAACTTTATTGCTTTATAAGATGCTTGCGCACGTAAGAAGAGAGTGGTATTAAACAAATGTATAATTACTTTATTTTTATTG                >  2:1040080/1‑101                                                                               AAGTTGGCAGCATCACCAAAAACTTTATTGCTTTATAAGATGCTTGCGCACGTAAGAAGAGAGTGGTATTAAACAAATGTATAATTACTTTATTTTTATTG                >  2:1504231/1‑101                                                                                AGTTGGCAGCATCACCAAAAACTTTATTGCTTTATAAGATGCTTGCGCACGTAAGAAGAGAGTGGTATTAAACAAATGTATAATTACTTTATTTTTATTGG               <  2:563299/101‑1                                                                                 GTTGGCAGCATCACCAAAAACTTTATTGCTTTATAAGATGCTTGCGCACGTAAGAAGAGAGTGGTATTAAACAAATGTATAATTACTTTATTTTTATTGGG              <  2:1307440/101‑1                                                                                  TTGGCAGCATCACCAAAAACTTTATTGCTTTATAAGATGCTTGCGCACGTAAGAAGAGAGTGGTATTAAACAAATGTATAATTACTTTATTTTTATTGGGT             <  1:1501409/101‑1                                                                                  TTGGCAGCATCACCAAAAACTTTATTGCTTTATAAGATGCTTGCGCACGTAAGAAGAGAGTGGTATTAAACAAATGTATAATTACTTTATTTTTATTGGGT             <  1:1262506/101‑1                                                                                    GGCAGCATCACCAAAAACTTTATTGCTTTATAAGATGCTTGCGCACGTAAGAAGAGAGTGGTATTAAACAAATGTATAATTACTTTATTTTTATTGGGTTA           <  1:1661968/101‑1                                                                                       AGCATCACCAAAAACTTTATTGCTTTATAAGATGCTTGCGCACGTAAGAAGAGAGTGGTATTAAACAAATGTATAATTACTTTATTTTTATTGGGTTAAAC        >  1:862621/1‑101                                                                                        GCATCACCAAAAACTTTATTGCTTTATAAGATGCTTGCGCACGTAAGAAGAGAGTGGTATTAAACAAATGTATAATTACTTTATTTTTATTGGGTTAAACT       <  2:423594/101‑1                                                                                          ATCACCAAAAACTTTATTGCTTTATAAGATGCTTGCGCACGTAAGAAGAGAGTGGTATTAAACAAATGTATAATTACTTTATTTTTATTGGGTTAAACTAT     >  1:798672/1‑101                                                                                            CACCAAAAACTTTATTGCTTTATAAGATGCTTGCGCACGTAAGAAGAGAGTGGTATTAAACAAATGTATAATTACTTTATTTTTATTGGGTTAAACTATGA   >  1:994033/1‑101                                                                                            CACCAAAAACTTTATTGCTTTATAAGATGCTTGCGCACGTAAGAAGAGAGTGGCATTAAACAAATGTATAATTACTTTATTTTTATTGGGTTAAACTATGA   >  1:563227/1‑101                                                                                             ACCAAAAACTTTATTGCTTTATAAGATGCTTGCGCACGTAAGAAGAGAGTGGTATTAAACAAATGTATAATTACTTTATTTTTATTGGGTTAAACTATGAA  >  2:262218/1‑101                                                                                             ACCAAAAACTTTATTGCTTTATAAGATGCTTGCGCACGTAAGAAGAGAGTGGTATTAAACAAATGTATAATTACTTTATTTTTATTGGGTTAAACTATGAA  <  2:1242852/101‑1                                                                                |||||||||||||||                                                                                                    TAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  223/620‑698 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAAAAACTTTATTGCTTTATAAGATGCTTGCGCACGTAAGAAGAGAGTGGTATTAAACAAATGTATAATTACTTTATTTTTATTGGGTTAAACTATGAA  >  36/4798‑4896

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.