New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? 222 = 14430 (0.000)77 (1.170) 57/198 0.1 98.7% intergenic (–/–) –/– –/–
?96 = 5653 2 (0.030)intergenic (–/–) –/– –/–

GAATTAGCCTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  222/1347‑1443
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aAAACGGTCTGCGCTGCGGGACGCGCGAATTGAATTATGGCCCACACCAGTGGCGCGGCGACTTCCAGTTCAACATCAGCCGCTACAGTCAACAGCAACTG  <  96/5653‑5554
                                                                                                                                                                                                     
GAATTAGCCTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAAC                                                                                                  <  1:1630080/101‑1
GAATTAGCCTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAAC                                                                                                  >  1:1397420/1‑101
GAATTAGCCTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAAC                                                                                                  <  2:220493/101‑1
 AATTAGCCTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAACG                                                                                                 <  1:254758/101‑1
 AATTAGCCTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAACG                                                                                                 <  2:943558/101‑1
 AATTAGCCTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAACG                                                                                                 >  1:1353166/1‑101
   TTAGCCTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAACGGT                                                                                               <  1:14055/101‑1
    TAGCCTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAACGGTC                                                                                              >  2:776220/1‑101
        CTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAACGGTCTGCG                                                                                          >  1:617347/1‑101
           AAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAACGGTCTGCGCTG                                                                                       <  2:363335/101‑1
             ATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAACGGTTTGCGCTGCG                                                                                     >  1:579435/1‑101
             ATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAACGGTCTGCGCTGCG                                                                                     >  1:93225/1‑101
              TTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAACGGTCTGCGCTGCGG                                                                                    >  1:272453/1‑101
              TTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAACGGTCTGCGCTGCGG                                                                                    >  2:1043033/1‑101
               TAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAACGGTCTGCGCTGCGGG                                                                                   >  1:1174046/1‑101
                AAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAACGGTCTGCGCTGCGGGA                                                                                  >  2:1161420/1‑101
                AAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAACGGTCTGCGCTGCGGGA                                                                                  <  2:54680/101‑1
                 AAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAACGGTCTGCGCTGCGGGAC                                                                                 <  1:943450/101‑1
                 AAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAACGGTCTGCGCTGCGGGAC                                                                                 <  1:1354710/101‑1
                  AAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAACGGTCTGCGCTGCGGGACG                                                                                >  1:309537/1‑101
                  AAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAACGGTCTGCGCTGCGGGACG                                                                                <  1:519299/101‑1
                        TGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAACGGTCTGCGCTGCGGGACGCGCGAA                                                                          >  2:256830/1‑101
                         GACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAACGGTCTGCGCTGCGGGACGCGCGAAT                                                                         >  1:635091/1‑101
                             CCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAACGGTCTGCGCTGCGGGACGCGCGAATTGAA                                                                     >  2:447575/1‑101
                             CCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAACGGTCTGCGCTGCGGGACGCGCGAATTGAA                                                                     >  2:1610523/1‑101
                              CAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAACGGTCTGCGCTGCGGGACGCGCGAATTGAAT                                                                    <  2:485568/101‑1
                               AATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAAATTTTTGGGGTCAGTACAAAACGGTCTGCGCTGCGGGACGCGCGAATTGAATT                                                                   >  2:544369/1‑101
                                ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAACGGTCTGCGCTGCGGGACGCGCGAATTGAATTA                                                                  >  2:1561565/1‑101
                                ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAACGGTCTGCGCTGCGGGACGCGCGAATTGAATTA                                                                  >  1:782429/1‑101
                                ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAACGGTCTGCGCTGCGGGACGCGCGAATTGAATTA                                                                  <  1:849792/101‑1
                                ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAACGGTCTGCGCTGCGGGACGCGCGAATTGAATTA                                                                  <  2:84121/101‑1
                                  TGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAACGGTCTGCGCTGCGGGACGCGCGAATTGAATTATG                                                                <  2:679658/101‑1
                                  TGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAACGGTCTGCGCTGCGGGACGCGCGAATTGAATTATG                                                                <  2:827510/101‑1
                                      TATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAACGGTCTGCGCTGCGGGACGCGCGAATTGAATTATGGCCC                                                            <  1:1581797/101‑1
                                       ATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAACGGTCTGCGCTGCGGGACGCGCGAATTGAATTATGGCCCA                                                           >  1:312373/1‑101
                                       ATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAACGGTCTGCGCTGCGGGACGCGCGAATTGAATTATGGCCCA                                                           <  1:426572/101‑1
                                          GGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAACGGTCTGCGCTGCGGGACGCGCGAATTGAATTATGGCCCACAC                                                        >  1:950133/1‑101
                                          GGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAACGGTCTGCGCTGCGGGACGCGCGAATTGAATTATGGCCCACAC                                                        >  1:1373032/1‑101
                                           GAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAACGGTCTGCGCTGCGGGACGCGCGAATTGAATTATGGCCCACACC                                                       >  1:743995/1‑101
                                               CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAACGGTCTGCGCTGCGGGACGCGCGAATTGAATTATGGCCCACACCAGTG                                                   <  1:291006/101‑1
                                                 GACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAACGGTCTGCGCTGCGGGACGCGCGAATTGAATTATGGCCCACACCAGTGGC                                                 <  1:1345578/101‑1
                                                 GACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAACGGTCTGCGCTGCGGGACGCGCGAATTGAATTATGGCCCACACCAGTGGC                                                 <  1:244498/101‑1
                                                 GACCTATATGCCTCGTGTTTAACTGTCCAACTTTTAGGGGTCAGTACAAAACGGTCTGCGCTGCGGGACGCGCGAATTGAATTATGGCCCACACCAGTGGC                                                 <  1:198538/101‑1
                                                    CTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAACGGTCTGCGCTGCGGGACGCGCGAATTGAATTATGGCCCACACCAGTGGCGCG                                              <  1:508658/101‑1
                                                    CTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGCCAGTACAACACGGTCTGCGCTGCGGGACGCGCGAATTGAATTATAACCCACACCAGTGGCGCG                                              >  2:1549597/1‑101
                                                       TATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAACGGTCTGCGCTGCGGGACGCGCGAATTGAATTATGGCCCACACCAGTGGCGCGGCG                                           <  2:572098/101‑1
                                                        ATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAACGGTCTGCGCTGCGGGACGCGCGAATTGAATTATGGCCCACACCAGTGGCGCGGCGA                                          >  2:44809/1‑101
                                                          GCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAACGGTCTGCGCTGCGGGACGCGCGAATTGAATTATGGCCCACACCAGTGGCGCGGCGACT                                        <  1:1331697/101‑1
                                                            CTCGTGTTTAACTGTCCAACTTTTTGGGGTCAATACAAAACGGTCTGCGCTGCGGGACGCGCGAATTGAATTATGGCCCACACCAGTGGCGCGGCGACTTC                                      >  1:130019/1‑101
                                                              aGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAACGGTCTGCGCTGCGGGACGCGCGAATTGAATTATAGCCCACACCAGTGGCGCGGCGACTTCCA                                    >  1:1647902/2‑101
                                                               GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAACGGTCTGCGCTGCGGGACGCGCGAATTGAATTATGGCCCACACCAGTGGCGCGGCGACTTCCAG                                   >  1:959530/1‑101
                                                               GTGTTTAACTGTCCAACTTTTTGGGGCCAGTACAAAACGGTCTGCGCTGCGGGACGCGCGAATTGAATTATGGCCCACACCAGTGGCGCGGCGACTTCCAG                                   >  2:1103025/1‑101
                                                                 GTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAACGGTCTGCGCTGCGGGACGCGCGAATTGAATTATGGCCCACACCAGTGGCGCGGCGACTTCCAGTT                                 >  2:1530753/1‑101
                                                                  TTTAACTGTCCAACTTTTTGGGGTCAGTACAAAACGGTCTGCGCTGCGGGACGCGCGAATTGAATTATGGCCCACACCAGTGGCGCGGCGACTTCCAGTTC                                <  1:720625/101‑1
                                                                   TTAACTGTCCAACTTTTTGGGGTCAGTACAAAACGGTCTGCGCTGCGGGACGCGCGAATTGAATTATGGCCCACACCAGTGGCGCGGCGACTTCCAGTTCA                               <  2:1213519/101‑1
                                                                      ACTGTCCAACTTTTTGGGGTCAGTACAAAACGGTCTGCGCTGCGGGACGCGCGAATTGAATTATGGCCCACACCAGTGGCGCGGCGACTTCCAGTTCAACA                            >  1:524127/1‑101
                                                                      ACTGTCCAACTTTTTGGGGTCAGTACAAAACGGTCTGCGCTGCGGGACGCGCGAATTGAATTATGGCCCACACCAGTGGCGCGGCGACTTCCAGTTCAACA                            >  2:469548/1‑101
                                                                       CTGTCCAACTTTTTGGGGTCAGTACAAAACGGTCTGCGCTGCGGGACGCGCGAATTGAATTATGGCCCACACCAGTGGCGCGGCGACTTCCAGTTCAACAT                           >  2:89363/1‑101
                                                                       CTGTCCAACTTTTTGGGGTCAGTACAAAACGGTCTGCGCTGCGGGACGCGCGAATTGAATTATGGCCCACACCAGTGGCGCGGCGACTTCCAGTTCAACAT                           <  1:44809/101‑1
                                                                       CTGTCCAACTTTTTGGGGTCAGTACAAAACGGTCTGCGCTGCGGGACGCGCGAATTGAATTATGGCCCACACCAGTGGCGCGGCGACTTCCAGTTCAACAT                           >  1:683094/1‑101
                                                                       CTGTCCAACTTTTTGGGGTCAGTACAAAACGGTCTGCGCTGCGGGACGCGCGAATTGAATTATGGCCCACACCAGTGGCGCGGCGACTTCCAGTTCAACAT                           >  2:1159173/1‑101
                                                                       CTGTCCAACTTTTTGGGGTCAGTACAAAACGGTCTGCGCTGCGGGACGCGCGAATTGAATTATGGCCCACACCAGTGGCGCGGCGACTTCCAGTTCAACAT                           >  1:1391042/1‑101
                                                                        TGTCCAACTTTTTGGGGTCAGTACAAAACGGTCTGCGCTGCGGGACGCGCGAATTGAATTATGGCCCACACCAGTGGCGCGGCGACTTCCAGTTCAACATC                          >  1:1266820/1‑101
                                                                         GTCCAACTTTTTGGGGTCAGTACAAAACGGTCTGCGCTGCGGGACGCGCGAATTGAATTATGGCCCACACCAGTGGCGCGGCGACTTCCAGTTCAACATCA                         <  2:272453/101‑1
                                                                           CCAACTTTTTGGGGTCAGTACAAAACGGTCTGCGCTGCGGGACGCGCGAATTGAATTATGGCCCACACCAGTGGCGCGGCGACTTCCAGTTCAACATCAGC                       >  1:1352248/1‑101
                                                                            CAACTTTTTGGGGTCAGTACAAAACGGTCTGCGCTGCGGGACGCGCGAATTGAATTATGGCCCACACCAGTGGCGCGGCGACTTCCAGTTCAACATCAGCC                      >  2:143911/1‑101
                                                                               CTTTTTGGGGTCAGTACAAAACGGTCTGCGCTGCGGGACGCGCGAATTGAATTATGGCCCACACCAGTGGCGCGGCGACTTCCAGTTCAACATCAGCCGCT                   >  2:995289/1‑101
                                                                               CTTTTTGGGGTCAGTACAAAACGGTCTGCGCTGCGGGACGCGCGAATTGAATTATGGCCCACACCAGTGGCGCGGCGACTTCCAGTTCAACATCAGCCGCT                   >  1:163809/1‑101
                                                                                  TTTGGGGTCAGTACAAAACGGTCTGCGCTGCGGGACGCGCGAATTGAATTATGGCCCACACCAGTGGCGCGGCGACTTCCAGTTCAACATCAGCCGCTACA                <  1:36198/101‑1
                                                                                   TTGGGGTCAGTACAAAACGGTCTGCGCTGCGGGACGCGCGAATTGAATTATGGCCCACACCAGTGGCGCGGCGACTTCCAGTTCAACATCAGCCGCTACAG               <  2:646630/101‑1
                                                                                        GTCAGTACAAAACGGTCTGCGCTGCGGGACGCGCGAATTGAATTATGGCCCACACCAGTGGCGCGGCGACTTCCAGTTCAACATCAGCCGCTACAGTCAAC          <  2:833020/101‑1
                                                                                         TCAGTACAAAACGGTCTGCGCTGCGGGACGCGCGAATTGAATTATGGCCCACACCAGTGGCGCGGCGACTTCCAGTTCAACATCAGCCGCTACAGTCAACA         <  2:1104558/101‑1
                                                                                          CAGTACAAAACGGTCTGCGCTGCGGGACGCGCGAATTGAATTATGGCCCACACCAGTGGCGCGGCGACTTCCAGTTCAACATCAGCCGCTACAGTCAACAG        <  2:782424/101‑1
                                                                                             TACAAAACGGTCTGCGCTGCGGGACGCGCGAATTGAATTATGGCCCACACCAGTGGCGCGGCGACTTCCAGTTCAACATCAGCCGCTACAGTCAACAGCAA     >  2:1094330/1‑101
                                                                                              ACAAAACGGTCTGCGCTGCGGGACGCGCGAATTGAATTATGGCCCACACCAGTGGCGCGGGGGCTTCCAGTTCAACACCAGCCGCTCCAGTCAACAGCAAC    <  2:743990/101‑1
                                                                                              ACAAAACGGTCTGCGCTGCGGGACGCGCGAATTGAATTATGGCCCACACCAGTGGCGCGGCGACTTCCAGTTCAACATCAGCCGCTACAGTCAACAGCAAC    <  2:524122/101‑1
                                                                                               CAAAACGGTCTGCGCTGCGGGACGCGCGAATTGAATTATGGCCCACACCAGTGGCGCGGCGACTTCCAGTTCAACATCAGCCGCTACAGTCAACAGCAACT   <  2:1352242/101‑1
                                                                                                AAAACGGTCTGCGCTGCGGGACGCGCGAATTGAATTATGGCCCACACCAGTGGCGCGGCGACTTCCAGTTCAACATCAGCCGCTACAGTCAACAGCAACTG  <  1:996059/101‑1
                                                                                                                                                                                                     
GAATTAGCCTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  222/1347‑1443
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aAAACGGTCTGCGCTGCGGGACGCGCGAATTGAATTATGGCCCACACCAGTGGCGCGGCGACTTCCAGTTCAACATCAGCCGCTACAGTCAACAGCAACTG  <  96/5653‑5554

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.