| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | 222 | = 1443 | 0 (0.000) | 67 (1.010) | 53/200 | 0.2 | 98.5% | intergenic (–/–) | –/– | –/– |
| ? | 48 | = 12985 | 2 (0.030) | intergenic (–/–) | –/– | –/– | |||||
GAATTAGCCTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > 222/1347‑1443‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGAATCGGCTTTCGAAAGTGGGCTATCATCCCACCCCGCGCCGCAGATTGCATCGCCATTTTTGTAAAACAATTTCTACAAAGTCGTGTCTGGCGGAAA < 48/12985‑12887 GAATTAGCCTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGAA > 1:15224/1‑101 ATTAGCCTGAAATTAAAAGGTCTGTCTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGAATC < 1:1312546/101‑1 ATTAGCCTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGAATC < 2:1266150/101‑1 ATTAGCCTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGAATC > 1:787489/1‑101 TTAGCCTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGAATCG < 1:1686589/101‑1 TTAGCCTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGAATCG < 1:1347376/101‑1 CTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGAATCGGCTTT > 1:1120890/1‑101 CTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGAATCGGCTTT < 1:302046/101‑1 TGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGAATCGGCTTTC > 2:85859/1‑101 TGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGAATCGGCTTTC > 1:1341746/1‑101 TGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATG‑CTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGAATCGGCTTTCG < 1:1176793/101‑1 AAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGAATCGGCTTTCGA > 1:1608945/1‑101 ATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGAATCGGCTTTCGAAA < 2:813045/101‑1 TTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGAATCGGCTTTCGAAAG < 1:1204198/101‑1 TAAAAGGTCTGACTCCAATTGAATATCGCAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGAATCGGCTTTCGAAAGT < 1:658082/101‑1 AAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGAATCGGCTTTCGAAAGTGGG > 2:1116655/1‑101 GGTCTGACTCCAATTGAATATCGGCATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGCCAGTACACGAATCGTCTTTCGAAAGTGGGCT > 2:1170337/1‑101 TGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGAATCGGCTTTCGAAAGTGGGCTATCA < 2:913505/101‑1 TGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGAATCGGCTTTCGAAAGTGGGCTATCA > 1:877436/1‑101 TGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGAATCGGCTTTCGAAAGTGGGCTATCA < 2:948982/101‑1 AATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGAATCGGCTTTCGAAAGTGGGCTATCATCCCCCC > 2:406845/1‑101 AATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGAATCGGCTTTCGAAAGTGGGCTATCATCCCACC > 2:793544/1‑101 ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGAATCGGCTTTCGAAAGTGGGCTATCATCCCACCC > 2:469885/1‑101 ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGAATCGGCTTTCGAAAGTGGGCTATCATCCCACCC > 2:1574220/1‑101 ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGAATCGGCTTTCGAAAGTGGGCTATCATCCCACCC > 2:1406885/1‑101 TATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGAATCGGCTTTCGAAAGTGGGCTATCATCCCACCCCGCGCC > 1:1091843/1‑101 GGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGAATCGGCTTTCGAAAGTGGGCTATCATCCCACCCCGCGCCGCAG > 2:541614/1‑101 GACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGAATCGGCTTTCGAAAGTGGGCTATCATCCCACCCCGCGCCGCAGATTGCAT < 2:765582/101‑1 GACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGAATCGGCTTTCGAAAGTGGGCTATCATCCCACCCCGCGCCGCAGATTGCAT > 1:1479632/1‑101 GACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGAATCGGCTTTCGAAAGTGGGCTATCATCCCACCCCGCGCCGCAGATTGCAT < 1:277307/101‑1 GACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGAATCGGATTTCGAAAGTGGGCTATCATCCCACCCCGCGCCGCAGATTGCAT < 1:235837/101‑1 ACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGAATCGGCTTTCGAAAGTGGGCTATCATCCCACCCCGCGCCGCAGATTGCATC < 2:1418954/101‑1 CTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGAATCGGCTTTCGAAAGTGGGCTATCATCCCACCCCGCGCCGCAGATTGCATCGC > 1:954495/1‑101 ATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGAATCGGCTTTCGAAAGTGGGCTATCATCCCACCCCGCGCCGCAGATTGCATCGCCA > 2:460297/1‑101 ATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGAATCGGCTTTCGAAAGTGGGCTATCATCCCACCCCGCGCCGCAGATTGCATCGCCATT > 2:526077/1‑101 ATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGAATCGGCTTTCGAAAGTGGGCTATCATCCCACCCCGCGCCGCAGATTGCATCGCCATT < 2:15224/101‑1 TGCCTCGTGTTTAACTGTCCAGCTTTTTGGGGTCAGTACACGAATCGGCTTTCGAAAGTGGGCTATCATCCCACCCCGCGCCGCAGATTGCATCGCCATTT < 2:1358892/101‑1 TGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGAATCGGCTTTCGAAAGTGGGCTATCATCCCACCCCGCGCCGCAGATTGCATCGCCATTT < 1:109345/101‑1 CCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGAATCGGCTTTCGAAAGTGGGCTATCATCCCACCCCGCGCCGCAGATTGCATCGCCATTTTT > 1:708182/1‑101 CCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGAATCGGCTTTCGAAAGTGGGCTATCATCCCACCCCGCGCCGCAGATTGCATCGCCATTTTT > 2:622977/1‑101 CTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGAATCGGCTTTCGAAAGTGGGCTATCATCCCACCCCGCGCCGCAGATTGCATCGCCATTTTTG < 1:281404/101‑1 CTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGAATCGGCTTTCGAAAGTGGGCTATCATCCCACCCCGCGCCGCAGATTGCATCGCCATTTTTG > 2:399844/1‑101 TGTTTAACTGTCCAACTTTTTGGGGTCAGTACACGAATCGGCTTTCGAAAGTGGGCTATCATCCCACCCCGCGCCGCAGATTGCATCGCCATTTTTGTAAA < 1:1387794/101‑1 TTTAACTGTCCAACTTTTTGGGGTCAGTACACGAATCGGCTTTCGAAAGTGGGCTATCATCCCACCCCGCGCCGCAGATTGCATCGCCATTTTTGTAAAAC < 1:1212363/101‑1 AACTGTCCAACTTTTTGGGGTCAGTACACGAATCGGCTTTCGAAAGTGGGCTATCATCCCACCCCGCGCCGCAGATTGCATCGCCATTTTTGTAAAACAAT > 1:85466/1‑101 ACTGTCCAACTTTTTGGGGTCAGTACACGAATCGGCTTTCGAAAGTGGGCTATCATCCCACCCCGCGCCGCAGATTGCATCGCCATTTTTGTAAAACAATT < 1:1702373/101‑1 ACTGTCCAACTTTTTGGGGTCAGTACACGAATCGGCTTTCGAAAGTGGGCTATCATCCCACCCCGCGCCGCAGATTGCATCGCCATTTTTGTAAAACAATT > 1:979030/1‑101 CTGTCCAACTTTTTGGGGTCAGTACACGAATCGGCTTTCGAAAGTGGGCTATCATCCCACCCCGCGCCGCAGATTGCATCGCCATTTTTGTAAAACAATTT < 1:469890/101‑1 TGTCCAACTTTTTGGGGTCAGTACACGAATCGGCTTTCGAAAGTGGGCTATCATCCCACCCCGCGCCGCAGATTGCATCGCCATTTTTGTAAAACAATTTC > 1:669662/1‑101 TGTCCAACTTTTTGGGGTCAGTACACGAATCGGCTTTCGAAAGTGGGCTATCATCCCACCCCGCGCCGCAGATTGCATCGCCATTTTTGTAAAACAATTTC < 1:78626/101‑1 CCAACTTTTTGGGGTCAGTACACGAATCGGCTTTCGAAAGTGGGCTATCATCCCACCCCGCGCCGCAGATTGCATCGCCATTTTTGTAAAACAATTTCTAC < 2:954490/101‑1 CCAACTTTTTGGGGTCAGTACACGAATCGGCTTTCGAAAGTGGGCTATCATCCCACCCCGCGCCGCAGATTGCATCGCCATTTTTGTAAAACAATTTCTAC > 1:513969/1‑101 CCAACTTTTTGGGGTCAGTACACGAATCGGCTTTCGAAAGTGGGCTATCATCCCACCCCGCGCCGCAGATTGCATCGCCATTTTTGTAAAACAATTTCTAC > 2:396487/1‑101 AACTTTTTGGGGTCAGTACACGAATCGGCTTTCGAAAGTGGGCTATCATCCCACCCCGCGCCGCAGATTGCATCGCCATTTTTGTAAAACAATTTCTACAA < 1:1116660/101‑1 AACTTTTTGGGGTCAGTACACGAATCGGCTTTCGAAAGTGGGCTATCATCCCACCCCGCGCCGCAGATTGCATCGCCATTTTTGTAAAACAATTTCTACAA < 1:1222219/101‑1 ACTTTTTGGGGTCAGTACACGAATCGGCTTTCGAAAGTGGGCTATCATCCCACCCCGCGCCGCAGCTTGCATCGCCATTTTTTTAAAACAATTTCTTCAAA > 2:553817/1‑101 ACTTTTTGGGGTCAGTACACGAATCGGCTTTCGAAAGTGGGCTATCATCCCACCCCGCGCCGCAGATTGCATCGCCATTTTTGTAAAACAATTTCTACAAA > 1:903278/1‑101 CTTTTTGGGGTCAGTACACGAATCGGCTTTCGAAAGTGGGCTATCATCCCACCCCGCGCCGCAGATTGCATCGCCATTTTTGTAAAACAATTTCTACAAAG > 2:1006252/1‑101 CTTTTTGGGGTCAGTACACGAATCGGCTTTCGAAAGTGGGCTATCATCCCACCCCGCGCCGCAGATTGCATCGCCATTTTTGTAAAACAATTTCTACAAAG < 2:435309/101‑1 TGGGGTCAGTACACGAATCGGCTTTCGAAAGTGGGCTATCATCCCACCCCGCGCCGCAGATTGCATCGCCATTTTTGTAAAACAATTTCTACAAAGTCGTG < 1:677627/101‑1 GGGGTCAGTACACGAATCGGCTTTCGAAAGTGGGCTATCATCCCACCCCGCGCCGCAGATTGCATCGCCATTTTTGTAAAACAATTTCTACAAAGTCGTGT < 1:541619/101‑1 GGGTCAGTACACGAATCGGCTTTCGAAAGTGGCCTATAATCCCCCCCCGCGCGGAAGATTGCATCGCCATTTTTTTAAAACAATTTCTAAAAAGTCGGGTC > 1:1477917/1‑101 TCAGTACACGAATCGGCTTTCGAAAGTGGGCTATCATCCCACCCCGCGCCGCAGATTGCATCGCCATTTTTGTAAAACAATTTCTACAAAGTCGTGTCTGG < 1:1667070/101‑1 AGTACACGAATCGGCTTTCGAAAGTGGGCTATCATCCCACCCCGCGCCGCAGATTGCATCGCCATTTTTGTAAAACAATTTCTACAAAGTCGTGTCTGGCG > 2:784329/1‑101 GTACACGAATCGGCTTTCGAAAGTGGGCTATCATCCCACCCCGCGCCGCAGATTGCATCGCCATTTTTGTAAAACAATTTCTACAAAGTCGTGTCTGGCGG > 2:466047/1‑101 ACACGAATCGGCTTTCGAAAGTGGGCTATCATCCCACCCCGCGCCGCAGATTGCATCGCCATTTTTGTAAAACAATTTCTACAAAGTCGTGTCTGGCGGAA > 1:1335351/1‑101 CACGAATCGGCTTTCGAAAGTGGGCTATCATCCCACCCCGCGCCGCAGATTGCATCGCCATTTTTGTAAAACAATTTCTACAAAGTCGTGTCTGGCGGAAA > 2:1502086/1‑101 GAATTAGCCTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > 222/1347‑1443‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGAATCGGCTTTCGAAAGTGGGCTATCATCCCACCCCGCGCCGCAGATTGCATCGCCATTTTTGTAAAACAATTTCTACAAAGTCGTGTCTGGCGGAAA < 48/12985‑12887 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |