New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	222	1 =	0 (0.000)	67 (1.010)	58/200	0.2	86.5%	intergenic (–/–)	–/–	–/–
	?	62	21546 =	21 (0.320)					intergenic (–/–)	–/–	–/–

ACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  222/91‑1 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAACACACTGATACTCAGTGATAACGGCGGCAGAAGCCTGTATTTTGAGCACCT  >  62/21546‑21645                                                                                                                                                                                                 ACGTCTTCAGGGCGCTTTTCAAAAGGGTGTTTTGTCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTG                                                                                            <  2:899015/101‑1      TTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAA                                                                                       >  2:549890/1‑101       TCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAAT                                                                                      <  1:271793/101‑1         AAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGC                                                                                    <  2:1566003/101‑1          AGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCC                                                                                   >  1:928645/1‑101           GGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCT                                                                                  <  1:403603/101‑1            GCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTG                                                                                 <  1:1004776/101‑1            GCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTG                                                                                 <  2:786851/101‑1            GCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTG                                                                                 >  2:129198/1‑101             CGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGC                                                                                <  1:1552288/101‑1              tCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCG                                                                               <  2:811364/100‑1               CTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGG                                                                              <  1:883992/101‑1                   TCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATAT                                                                          >  1:737616/1‑101                    CAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATC                                                                         >  2:74117/1‑101                       AAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGC                                                                      >  1:1676654/1‑101                         GGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTT                                                                    <  1:1466247/101‑1                         GGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTT                                                                    >  1:1442074/1‑101                           GTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTAC                                                                  >  2:1250839/1‑101                            TATTTTGGCTTTGTCATATTAGGGGCTAATCCATTTCATCGTCCAACAAAATGGGTGCATTACAGCCCCTGCTGGAAAATGCCGGCGGATATCCGCTTACA                                                                 <  2:1569060/101‑1                             ATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAG                                                                <  1:549895/101‑1                              TTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGC                                                               >  2:1116433/1‑101                                TTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTG                                                             <  2:279629/101‑1                                  GGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCG                                                           <  2:1328831/101‑1                                    CTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCG                                                         >  2:356791/1‑101                                      TTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGAT                                                       >  1:742761/1‑101                                       TGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATA                                                      <  1:607115/101‑1                                         ACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAAC                                                    >  2:1637935/1‑101                                           ATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAACAC                                                  >  2:937766/1‑101                                           ATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAACAC                                                  >  1:550925/1‑101                                              TTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAACACACT                                               <  1:485644/101‑1                                                AGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAACACACTGA                                             <  1:629530/101‑1                                                AGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAACACACTGA                                             >  1:59772/1‑101                                                 GGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAACACACTGAT                                            >  1:330894/1‑101                                                     CTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAACACACTGATACTC                                        >  2:183823/1‑101                                                      TATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAACACACTGATACTCA                                       >  1:1528483/1‑101                                                      TATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAACACACTGATACTCA                                       >  2:1433385/1‑101                                                       ATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAACACACTGATACTCAG                                      >  2:1183517/1‑101                                                           CATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAACACACTGATACTCAGTGAT                                  >  1:694983/1‑101                                                           CATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAACACACTGATACTCAGTGAT                                  <  1:1204724/101‑1                                                            ATTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAACACACTGATACTCAGTGATA                                 <  1:731824/101‑1                                                             TTTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAACACACTGATACTCAGTGATAA                                >  2:1087065/1‑101                                                              TTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAACACACTGATACTCAGTGATAAC                               <  2:1568150/101‑1                                                              TTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAACACACTGATACTCAGTGATAAC                               <  2:809466/101‑1                                                              TTCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAACACACTGATACTCAGTGATAAC                               >  2:804206/1‑101                                                               TCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAACACACTGATACTCAGTGATAACG                              >  2:344728/1‑101                                                               TCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAACACACTGATACTCAGTGATAACG                              >  1:1609478/1‑101                                                               TCATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAACACACTGATACTCAGTGATAACG                              <  1:1668419/101‑1                                                                CATCGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAACACACTGATACTCAGTGATAACGG                             <  1:1157793/101‑1                                                                   CGTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAACACACTGATACTCAGTGATAACGGCGG                          <  1:1116438/101‑1                                                                    GTCCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAACACACTGATACTCAGTGATAACGGCGGC                         <  1:94334/101‑1                                                                      CCAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAACACACTGATACTCAGTGATAACGGCGGCAG                       >  1:1534742/1‑101                                                                       CAACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAACACACTGATACTCAGTGATAACGGCGGCAGA                      >  1:914890/1‑101                                                                        AACAAAATGGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAACACACTGATACTCAGTGATAACGGCGGCAGAA                     >  2:1046774/1‑101                                                                                GGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAACACACTGATACTCAGTGATAACGGCGGCAGAAGCCTGTAT             <  2:198950/101‑1                                                                                GGGTGCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAACACACTGATACTCAGTGATAACGGCGGCAGAAGCCTGTAT             <  1:1036956/101‑1                                                                                    cCAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAACTCGCTGATACTCAGTGATAACGGCGGCAGAAGCCTGTATTTTG         <  2:1233109/100‑1                                                                                     CAGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAACACACTGATACTCAGTGATAACGGCGGCAGAAGCCTGTATTTTGA        <  1:1547499/101‑1                                                                                      AGTACAGCCCCGGCTGGAAAATGCCTGCGGTTATCCGCTTACAGCTGCGCGATAACACACTGATACTCAGTGATAACGGCGGCAGAAGCCTGTATTTTGAG       <  2:702164/101‑1                                                                                      AGTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAACACACTGATACTCAGTGATAACGGCGGCAGAAGCCTGTATTTTGAG       <  1:3031/101‑1                                                                                       GTACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAACACACTGATACTCAGTGATAACGGCGGCAGAAGCCTGTATTTTGAGC      >  1:28241/1‑101                                                                                        TACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAACACACTGATACTCAGTGATAACGGCGGCAGAAGCCTGTATTTTGAGCA     <  2:737611/101‑1                                                                                        TACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAACACACTGATACTCAGTGATAACGGCGGCAGAAGCCTGTATTTTGAGCA     <  2:1442068/101‑1                                                                                         ACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAACACACTGATACTCAGTGATAACGGCGGCAGAAGCCTGTATTTTGAGCAC    >  2:284975/1‑101                                                                                         ACAGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAACACACTGATACTCAGTGATAACGGCGGCAGAAGCCTGTATTTTGAGCAC    <  1:961522/101‑1                                                                                           AGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAACACACTGATACTCAGTGATAACGGCGGCAGAAGCCTGTATTTTGAGCACCT  <  1:111594/101‑1                                                                                           AGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAACACACTGATACTCAGTGATAACGGCGGCAGAAGCCTGTATTTTGAGCACCT  >  1:1636801/1‑101                                                                                           AGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAACACACTGATACTCAGTGATAACGGCGGCAGAAGCCTGTATTTTGAGCACCT  >  2:429431/1‑101                                                                                                                                                                                                 ACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  222/91‑1 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAACACACTGATACTCAGTGATAACGGCGGCAGAAGCCTGTATTTTGAGCACCT  >  62/21546‑21645

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.