New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	222	1 =	0 (0.000)	47 (0.710)	40/200	0.5	95.9%	intergenic (–/–)	–/–	–/–
	?	25	= 24575	4 (0.060)					intergenic (–/–)	–/–	–/–

TTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  222/94‑1 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGGCCGCCGTTTCAGCCGTACCATAATAGATGGATTGCATCAGGCGCTGGTTATTAATCGCCAGTG  <  25/24575‑24476                                                                                                                                                                                                    TTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATTGTCAT                                                                                               <  1:278756/101‑1   CACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATTGTCATAG                                                                                             <  1:1365636/101‑1     CGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATTGTCATAGGC                                                                                           >  2:973969/1‑101      GACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATTGTCATAGGCC                                                                                          >  1:318398/1‑101         TTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATTGTCATAGGCCCAC                                                                                       >  1:1148790/1‑101               GCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATTGTCATAGGCCCACGAGGCG                                                                                 >  2:1417918/1‑101                   TTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATTGTCATAGGCCCACGAGGCGCGCG                                                                             <  2:373632/101‑1                           AGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATA                                                                     <  1:1013367/101‑1                           AGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATA                                                                     <  2:296214/101‑1                             GGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGA                                                                   >  1:501827/1‑101                              GTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAG                                                                  <  1:635846/101‑1                              GTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAG                                                                  >  2:1567256/1‑101                              GTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAG                                                                  <  2:207267/101‑1                               TATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGG                                                                 <  1:1326168/101‑1                                 TTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGGCC                                                               <  1:52978/101‑1                                   TTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGGCCGC                                                             >  2:1080247/1‑101                                        TTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGGCCGCCGTTT                                                        >  1:1142773/1‑101                                        TTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGGCCGCCGTTT                                                        >  1:687798/1‑101                                          TGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGGCCGCCGTTTCA                                                      <  1:925058/101‑1                                             CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGGCCGCCGTTTCAGCC                                                   <  1:1083823/101‑1                                              ATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGGCCGCCGTTTCAGCCG                                                  >  1:1122055/1‑101                                              ATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGGCCGCCGCTTCAGCCa                                                  >  1:984328/1‑100                                                ATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGGCCGCCGTTTCAGCCGTA                                                >  1:513381/1‑101                                                ATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGGCCGCCGTTTCAGCCGTA                                                >  2:410620/1‑101                                                   AGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGGCCGCCGTTTCAGCCGTACCA                                             >  2:1165521/1‑101                                                       GCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGGCCGCCGTTTCAGCCGTACCATAAT                                         <  2:1576190/101‑1                                                          ATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGGCCGCCGTTTCAGCCGTACCATAATAGA                                      >  2:384514/1‑101                                                          ATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGGCCGCCGTTTCAGCCGTACCATAATAGA                                      >  1:228917/1‑101                                                          ATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGGCCGCCGCTTCAGCCGTACCATAATAGA                                      >  1:1300699/1‑101                                                           TTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGGCCGCCGTTTCAGCCGTACCATAATAGAT                                     >  1:884628/1‑101                                                            TCCATTTCATCGTCCAACAAAATGGGTGCAGTACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGGCCGCCGTTTCAGCCGTACCATAATAGATG                                    >  2:483240/1‑101                                                             CCATTTCATCGTCCAACAAAATGGGTGCAGTACATTGTCATAGGCCCACGAGGCGTGCGGTAAAATAGAGGCCGCCGTTTCAGCCGTACCATAATAGATGG                                   >  2:830791/1‑101                                                              CATTTCATCGTCCAACAAAATGGGTGCAGTACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGGCCGCCGTTTCAGCCGTACCATAATAGATGGA                                  <  2:1225713/101‑1                                                               ATTTCATCGTCCAACAAAATGGGTGCAGTACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGGCCGCCGTTTCAGCCGTACCATAATAGATGGAT                                 >  2:1005197/1‑101                                                                   CATCGTCCAACAAAATGGGTGCAGTACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGGCCGCCGTTTCAGCCGTACCATAATAGATGGATTGCA                             >  1:1246/1‑101                                                                     TCGTCCAACAAAATGGGTGCAGTACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGGCCGCCGTTTCAGCCGTACCATAATAGATGGATTGCATC                           <  2:210026/101‑1                                                                      CGTCCAACAAAATGGGTGCAGTACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGGCCGCCGTTTCAGCCGTACCATAATAGATGGATTGCATCA                          <  1:384519/101‑1                                                                        TCCAACAAAATGGGTGCACTACATTGTCATAGGCCCACGGGGCGCGCGGTAAAATAGAGGCCGCCGTTTCAGCCGTACCATAATAGATGGATTGCATCAGG                        <  1:282569/101‑1                                                                                 ATGGGTGCAGTACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGGCCGCCGTTTCAGCCGTACCATAATAGATGGATTGCATCAGGCGCTGGTTA               >  1:349013/1‑101                                                                                   GGGTGCAGTACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGGCCGCCGTTTCAGCCGTACCATAATAGATGGATTGCATCAGGCGCTGGTTATT             <  2:1693414/101‑1                                                                                     GTGCAGTACATTGTGATAGGCCGACGAGGCGCGCGGTAAAATAGAGGCCGCCGTTTCAGCCGTACCAAAATAGATGGATTGCATCAGGCGCTGGTTATTAA           <  1:1192304/101‑1                                                                                       GCAGTACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGGCCGCCGTTTCAGCCGTACCATAATAGATGGATTGCATCAGGCGCTGGTTATTAATC         <  1:84439/101‑1                                                                                        CAGTACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGGCCGCCGTTTCAGCCGTACCATAATAGATGGATTGCATCAGGCGCTGGTTATTAATCG        <  2:1434883/101‑1                                                                                          GTACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGGCCGCCGTTTCAGCCGTACCATAATAGATGGATTGCATCAGGCGCTGGTTATTAATCGCC      >  1:1204108/1‑101                                                                                           TACATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGGCCGCCGTTTCAGCCGTACCATAATAGATGGATTGCATCAGGCGCTGGTTATTAATCGCCA     >  2:1512006/1‑101                                                                                             CATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGGCCGCCGTTTCAGCCGTACCATAATAGATGGATTGCATCAGGCGCTGGTTATTAATCGCCAGT   >  1:24392/1‑101                                                                                              ATTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGGCCGCCGTTTCAGCCGTACCATAATAGATGGATTGCATCAGGCGCTGGTTATTAATCGCCAGTG  >  2:1053926/1‑101                                                                                                                                                                                                    TTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  222/94‑1 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTGTCATAGGCCCACGAGGCGCGCGGTAAAATAGAGGCCGCCGTTTCAGCCGTACCATAATAGATGGATTGCATCAGGCGCTGGTTATTAATCGCCAGTG  <  25/24575‑24476

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.